Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006539

Physical Location & Seq

Genomic Coordinates Forward (+)

31752712 .. 31756630

Gene Structure 3919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G336500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTCACACCAAACTTGAACTTGGAATATGAAAATGATTCGGAAGTTTCAAGCCAAGAAAATTTCAACATCCCTCTGCAAGAAGAATCCCATGATCTCTCTAAGGATAGCACCACCACTTCTTCCTGCCTCACAAATCAGACAAACCTCCAACAACAAGATCCGGGGCCTATTTCCCTCAACTTGACACTCCAGTTTAGCTCCCGTGACATTGAATTGAAGGGCACAGGGGAGACTAGCAGTACTGAAGGAGCTGCACCCCCTACTTCAGAAGCAACAATGCCAAGGGTGTTCTCATGCAACTACTGCAAGCGTAAGTTCTATAGCTCACAGGCACTTGGTGGCCATCAGAATGCTCACAAGAGAGAGAGGACAATGGCCAAGCGTGCTATGCGTATGGGAATGTTTCCTGACAGGTACACTAGCTTGGCATCTCTTCCCCTGCATGGTTCTGCTGCTTCTGCATTTCGATCTCTTGGTATCGAAGCTCATGCTGCAGTGCACCAAAACATTATGATACCATCCGATCAGAGGCTCCCTGTCCCTGACACAAGAGGTGTGGCAAGGTTTCAGCAAGGCTATTTTGGAGTGCCAATGTTTATGGAAGAGGATGATGTGGGTATGTTTTGGCCTGGGAGTTTCCGTCAGGTGGGTGAGGGAGTTGGAGGTCGTCATTCGAATATGCAGTTTTCTCAAAATCCAACAATGAATTCAGGAGGATCCACCATGCCACCAAATACAAAGACAAGTTCATCTTCACCTGATCTTACTTTAAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

28.52

Weight (kDa)

5.97

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24625
fragaria_vesca	FvH4_4g33120 FvH4_4g33120 FvH4_4g33120 FvH4_4g33120
malus_domestica	MD13G1016900.v1.1 MD16G1014800.v1.1
prunus_persica	Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1
pyrus_communis	pycom13g01460 pycom16g01360
rosa_chinensis	RchiOBHm_Chr4g0442171
rosa_laevigata	RLG00000006033
rosa_multiflora	Rmu_sc0010284.1_g000008
rosa_roxburghii	Rroxscaffold_5G00383080
rosa_rugosa	Rorug04G0339300 Rorug04G0339300
rosa_samantha	Rh4AG391000 Rh4BG404600 Rh4CG419600 Rh4DG397600
rosa_wichuraiana	Rw4G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	155, 714, 727
AcoI	YGGCCR	2 cut(s)	343, 378
AcsI	RAATTY	2 cut(s)	61, 709
AcuI	CTGAAG	2 cut(s)	252, 267
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	244, 419
AfiI	CCNNNNNNNGG	3 cut(s)	446, 531, 649
AgsI	TTSAA	5 cut(s)	19, 51, 67, 215, 220
AjnI	CCWGG	1 cut(s)	631
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	6 cut(s)	201, 254, 327, 426, 488, 778
AluI	AGCT	6 cut(s)	201, 254, 327, 426, 488, 778
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	500
AlwI	GGATC	3 cut(s)	155, 714, 727
AoxI	GGCC	4 cut(s)	167, 343, 378, 629
ApaLI	GTGCAC	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	254, 455, 494
ApoI	RAATTY	2 cut(s)	61, 709
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	665, 750
AsuII	TTCGAA	1 cut(s)	677
BaeGI	GKGCMC	2 cut(s)	227, 504
BalI	TGGCCA	2 cut(s)	345, 380
BamHI	GGATCC	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	241, 442, 481
BccI	CCATC	2 cut(s)	354, 529
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BciT130I	CCWGG	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	2 cut(s)	237, 423
BfmI	CTRYAG	2 cut(s)	322, 495
BisI	GCNGC	3 cut(s)	255, 456, 495
BlsI	GCNGC	3 cut(s)	256, 457, 496
BmcAI	AGTACT	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	165, 633
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	3 cut(s)	168, 536, 721
BmrFI	CCNGG	2 cut(s)	165, 633
BmsI	GCATC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	677
BpuMI	CCSGG	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	164, 284, 632
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 531, 649
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	3 cut(s)	164, 284, 632
BseGI	GGATG	3 cut(s)	69, 521, 616
BseLI	CCNNNNNNNGG	3 cut(s)	446, 531, 649
BseNI	ACTGG	1 cut(s)	193
BseSI	GKGCMC	2 cut(s)	227, 504
BseXI	GCAGC	3 cut(s)	241, 442, 481
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	4 cut(s)	169, 345, 380, 631
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	3 cut(s)	446, 531, 649
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	4 cut(s)	169, 345, 380, 631
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	2 cut(s)	227, 504
Bsp143I	GATC	6 cut(s)	94, 160, 470, 526, 719, 763
BspANI	GGCC	4 cut(s)	169, 345, 380, 631
BspLI	GGNNCC	3 cut(s)	168, 536, 721
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	3 cut(s)	155, 714, 727
BspT104I	TTCGAA	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	164, 284, 632
BssMI	GATC	6 cut(s)	94, 160, 470, 526, 719, 763
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	633
Bst6I	CTCTTC	2 cut(s)	441, 600
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	311, 387
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	69, 521, 616
BstKTI	GATC	6 cut(s)	97, 163, 473, 529, 722, 766
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	6 cut(s)	94, 160, 470, 526, 719, 763
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 386, 391, 461, 494
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	2 cut(s)	163, 631
BstSFI	CTRYAG	2 cut(s)	322, 495
BstSLI	GKGCMC	2 cut(s)	227, 504
BstV1I	GCAGC	3 cut(s)	241, 442, 481
BstX2I	RGATCY	2 cut(s)	160, 719
BstYI	RGATCY	2 cut(s)	160, 719
BsuRI	GGCC	4 cut(s)	169, 345, 380, 631
BtsCI	GGATG	3 cut(s)	69, 521, 616
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	2 cut(s)	311, 387
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	243, 418
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	5 cut(s)	92, 297, 446, 491, 727
CviQI	GTAC	2 cut(s)	243, 418
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	6 cut(s)	96, 162, 472, 528, 721, 765
DpnII	GATC	6 cut(s)	94, 160, 470, 526, 719, 763
DraI	TTTAAA	1 cut(s)	774
DraIII	CACNNNGTG	1 cut(s)	341
EaeI	YGGCCR	2 cut(s)	343, 378
Eam1104I	CTCTTC	2 cut(s)	441, 600
EarI	CTCTTC	2 cut(s)	441, 600
Eco130I	CCWWGG	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	252, 267
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	5 cut(s)	95, 300, 449, 494, 730
FalI	AAGNNNNNCTT	2 cut(s)	739, 771
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	5 cut(s)	91, 296, 445, 490, 726
Fnu4HI	GCNGC	3 cut(s)	255, 456, 495
FokI	GGATG	3 cut(s)	56, 508, 623
Fsp4HI	GCNGC	3 cut(s)	255, 456, 495
FspBI	CTAG	2 cut(s)	237, 423
GluI	GCNGC	3 cut(s)	255, 456, 495
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	4 cut(s)	169, 345, 380, 631
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	5 cut(s)	95, 300, 449, 494, 730
HinfI	GANTC	2 cut(s)	38, 86
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	665, 750
Hpy166II	GTNNAC	2 cut(s)	420, 502
Hpy188I	TCNGA	7 cut(s)	43, 141, 271, 351, 526, 531, 782
Hpy188III	TCNNGA	2 cut(s)	410, 714
Hpy8I	GTNNAC	2 cut(s)	420, 502
HpyAV	CCTTC	2 cut(s)	214, 242
HpyCH4V	TGCA	9 cut(s)	79, 257, 300, 309, 445, 464, 497, 502, 685
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 386, 391, 461, 494
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	95, 300, 449, 494, 730
Kzo9I	GATC	6 cut(s)	94, 160, 470, 526, 719, 763
LmnI	GCTCC	3 cut(s)	206, 251, 540
Lsp1109I	GCAGC	3 cut(s)	241, 442, 481
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	2 cut(s)	237, 423
MaeIII	GTNAC	2 cut(s)	4, 206
MalI	GATC	6 cut(s)	96, 162, 472, 528, 721, 765
MboI	GATC	6 cut(s)	94, 160, 470, 526, 719, 763
MboII	GAAGA	5 cut(s)	95, 114, 428, 617, 747
MflI	RGATCY	2 cut(s)	160, 719
MhlI	GDGCHC	2 cut(s)	227, 504
MlsI	TGGCCA	2 cut(s)	345, 380
MluCI	AATT	3 cut(s)	61, 215, 709
MluNI	TGGCCA	2 cut(s)	345, 380
MmeI	TCCRAC	3 cut(s)	175, 643, 725
Mox20I	TGGCCA	2 cut(s)	345, 380
MscI	TGGCCA	2 cut(s)	345, 380
MseI	TTAA	1 cut(s)	773
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	2 cut(s)	345, 380
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	165, 633
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	5 cut(s)	306, 386, 391, 461, 494
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	6 cut(s)	94, 160, 470, 526, 719, 763
NlaIII	CATG	5 cut(s)	95, 300, 449, 494, 730
NlaIV	GGNNCC	3 cut(s)	168, 536, 721
NmuCI	GTSAC	2 cut(s)	4, 206
NspV	TTCGAA	1 cut(s)	677
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	38, 86
PkrI	GCNGC	3 cut(s)	256, 457, 496
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	3 cut(s)	168, 536, 721
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	2 cut(s)	160, 719
RsaI	GTAC	2 cut(s)	244, 419
RsaNI	GTAC	2 cut(s)	243, 418
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	773
SatI	GCNGC	3 cut(s)	255, 456, 495
Sau3AI	GATC	6 cut(s)	94, 160, 470, 526, 719, 763
Sau96I	GGNCC	1 cut(s)	167
ScaI	AGTACT	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	165, 633
SduI	GDGCHC	2 cut(s)	227, 504
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	2 cut(s)	322, 495
SfuI	TTCGAA	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	61, 215, 709
SspMI	CTAG	2 cut(s)	237, 423
StyD4I	CCNGG	2 cut(s)	163, 631
StyI	CCWWGG	1 cut(s)	284
TaqI	TCGA	3 cut(s)	469, 483, 677
TasI	AATT	3 cut(s)	61, 215, 709
TatI	WGTACW	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	38, 86
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	2 cut(s)	4, 206
TseI	GCWGC	3 cut(s)	254, 455, 494
Tsp45I	GTSAC	2 cut(s)	4, 206
TspDTI	ATGAA	3 cut(s)	45, 722, 741
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	504
VneI	GTGCAC	1 cut(s)	500
XapI	RAATTY	2 cut(s)	61, 709
XspI	CTAG	2 cut(s)	237, 423
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.