Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006539

Physical Location & Seq

Genomic Coordinates Reverse (-)

934188 .. 934952

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTAACACAAAACTTGAACTTGGAATTTGAAAATGATTCAGAAGTCACGGGCCAAGTAACTTCGAGCATACCTCTGCATGAAGAATCTCCTGACCCCTCTAAGGACAGCACAACCACTTCTTCGTGCCTCACAAATCAGAACCATCAACAACAAGATCCCGGACCTGTTTCCCTTGACTTGACACTCCAGTTTAGCTCAGGCGACACTGAATTGAAGGGCACGGGGGAGACTAGCAGTGAAGCAGTTGCACCCCCTACTTCAGAAGGAACAATCCCAAGGGTATTCTCATGCAACTACTGTAAGCGTAAGTTCTATAGCTCACAGGCACTCGGTGGCCATCAGAATGCTCATAAGAGGGAGAGGACAATGGCCAAGCGTGCTATGCGTATGGGAATGTTTCCAGATAGGTATACTAGCTTGGCATCTCTCCCCTTACATGGTTCTGCCGCTTCAGCGTTCCGGTCTCTTGGTATCCAAGCTCATTCTGCAGTGCACCAAAACACAATGATAACATCAGATCATCAGAGGTTCCCTGTCCCCGACACAAGAGGCGTAGCAAGGTTTCATCAGGGCTATTTTGGAGTGCCGATGTTCATGGACGAGGATGATGTGGGCATGTTTTGGCCCGGGAGTTTCCGACAAGTGGGTGAGGAAGCTGGAGGTCATCAATTAGCCCAAAATCCAAATATGAATACAGGAACAAGCATGGAACCAAGAAATAGTACAAGTTCGTCTTCACCCGATCTATCTCTAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

27.75

Weight (kDa)

5.77

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24625
fragaria_vesca	FvH4_4g33120 FvH4_4g33120 FvH4_4g33120 FvH4_4g33120
malus_domestica	MD13G1016900.v1.1 MD16G1014800.v1.1
prunus_persica	Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1
pyrus_communis	pycom13g01460 pycom16g01360
rosa_chinensis	RchiOBHm_Chr4g0442171
rosa_laevigata	RLG00000006033
rosa_multiflora	Rmu_sc0010284.1_g000008
rosa_roxburghii	Rroxscaffold_5G00383080
rosa_rugosa	Rorug04G0339300 Rorug04G0339300
rosa_samantha	Rh4AG391000 Rh4BG404600 Rh4CG419600 Rh4DG397600
rosa_wichuraiana	Rw4G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	413
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	2 cut(s)	337, 372
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	2 cut(s)	246, 438
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	727
AfiI	CCNNNNNNNGG	3 cut(s)	103, 440, 646
AgsI	TTSAA	3 cut(s)	19, 32, 217
AluBI	AGCT	6 cut(s)	198, 321, 420, 482, 659, 760
AluI	AGCT	6 cut(s)	198, 321, 420, 482, 659, 760
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	2 cut(s)	224, 471
Alw44I	GTGCAC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	4 cut(s)	52, 337, 372, 626
ApaLI	GTGCAC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	26
AspS9I	GGNCC	3 cut(s)	52, 164, 627
AsuC2I	CCSGG	3 cut(s)	162, 630, 631
AsuHPI	GGTGA	2 cut(s)	662, 732
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	2 cut(s)	224, 498
BalI	TGGCCA	2 cut(s)	339, 374
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	498
BccI	CCATC	2 cut(s)	153, 348
BciVI	GTATCC	1 cut(s)	485
BcnI	CCSGG	3 cut(s)	162, 630, 631
BcoDI	GTCTC	2 cut(s)	224, 471
BfaI	CTAG	2 cut(s)	234, 417
BfmI	CTRYAG	2 cut(s)	316, 489
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	162, 630, 631
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	3 cut(s)	52, 164, 627
BmiI	GGNNCC	2 cut(s)	533, 714
BmrFI	CCNGG	3 cut(s)	162, 630, 631
BmsI	GCATC	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	729
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpmI	CTGGAG	2 cut(s)	173, 681
Bpu10I	CCTNAGC	1 cut(s)	199
BpuMI	CCSGG	3 cut(s)	162, 630, 631
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	278, 629
BsaWI	WCCGGW	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 440, 646
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	278, 629
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	3 cut(s)	103, 440, 646
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	2 cut(s)	224, 498
BshFI	GGCC	4 cut(s)	54, 339, 374, 628
BsiHKAI	GWGCWC	1 cut(s)	498
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	3 cut(s)	162, 463, 630
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	3 cut(s)	103, 440, 646
BsmAI	GTCTC	2 cut(s)	224, 471
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	4 cut(s)	54, 339, 374, 628
Bso31I	GGTCTC	1 cut(s)	471
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	224, 498
Bsp143I	GATC	3 cut(s)	157, 520, 745
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	4 cut(s)	54, 339, 374, 628
BspCNI	CTCAG	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	533, 714
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	278, 629
BssMI	GATC	3 cut(s)	157, 520, 745
BssNAI	GTATAC	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	278
Bst1107I	GTATAC	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	102, 199
BstF5I	GGATG	1 cut(s)	613
BstKTI	GATC	3 cut(s)	160, 523, 748
BstMAI	GTCTC	2 cut(s)	224, 471
BstMBI	GATC	3 cut(s)	157, 520, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 385, 455, 488
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	3 cut(s)	160, 628, 629
BstSFI	CTRYAG	2 cut(s)	316, 489
BstSLI	GKGCMC	2 cut(s)	224, 498
BstV2I	GAAGAC	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BstZ17I	GTATAC	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	4 cut(s)	54, 339, 374, 628
BtsCI	GGATG	1 cut(s)	613
BtsI	GCAGTG	2 cut(s)	244, 498
BtsIMutI	CAGTG	3 cut(s)	207, 244, 498
Cac8I	GCNNGC	1 cut(s)	381
Cfr13I	GGNCC	3 cut(s)	52, 164, 627
Cfr9I	CCCGGG	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	726
CviAII	CATG	6 cut(s)	80, 291, 440, 598, 619, 709
CviQI	GTAC	1 cut(s)	726
DdeI	CTNAG	2 cut(s)	102, 199
DpnI	GATC	3 cut(s)	159, 522, 747
DpnII	GATC	3 cut(s)	157, 520, 745
DraIII	CACNNNGTG	1 cut(s)	335
EaeI	YGGCCR	2 cut(s)	337, 372
Eco130I	CCWWGG	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	2 cut(s)	246, 438
Eco88I	CYCGRG	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	6 cut(s)	83, 294, 443, 601, 622, 712
FalI	AAGNNNNNCTT	2 cut(s)	721, 753
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	6 cut(s)	79, 290, 439, 597, 618, 708
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	2 cut(s)	234, 417
GluI	GCNGC	1 cut(s)	450
GsuI	CTGGAG	2 cut(s)	173, 681
HaeIII	GGCC	4 cut(s)	54, 339, 374, 628
HapII	CCGG	3 cut(s)	162, 463, 630
Hin1II	CATG	6 cut(s)	83, 294, 443, 601, 622, 712
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	758
HinfI	GANTC	2 cut(s)	38, 86
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	3 cut(s)	162, 463, 630
HphI	GGTGA	2 cut(s)	662, 732
Hpy166II	GTNNAC	3 cut(s)	6, 414, 496
Hpy188I	TCNGA	7 cut(s)	43, 141, 265, 345, 520, 528, 641
Hpy188III	TCNNGA	2 cut(s)	92, 404
Hpy8I	GTNNAC	3 cut(s)	6, 414, 496
HpyAV	CCTTC	2 cut(s)	211, 260
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	5 cut(s)	79, 251, 294, 491, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 385, 455, 488
HpyF3I	CTNAG	2 cut(s)	102, 199
Hsp92II	CATG	6 cut(s)	83, 294, 443, 601, 622, 712
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	157, 520, 745
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	2 cut(s)	234, 417
MaeIII	GTNAC	2 cut(s)	46, 58
MalI	GATC	3 cut(s)	159, 522, 747
MboI	GATC	3 cut(s)	157, 520, 745
MboII	GAAGA	3 cut(s)	95, 114, 729
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	224, 498
MlsI	TGGCCA	2 cut(s)	339, 374
MluCI	AATT	3 cut(s)	26, 212, 671
MluNI	TGGCCA	2 cut(s)	339, 374
MmeI	TCCRAC	1 cut(s)	664
Mox20I	TGGCCA	2 cut(s)	339, 374
MscI	TGGCCA	2 cut(s)	339, 374
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	2 cut(s)	339, 374
MspI	CCGG	3 cut(s)	162, 463, 630
MspR9I	CCNGG	3 cut(s)	162, 630, 631
Mva1269I	GAATGC	1 cut(s)	352
MwoI	GCNNNNNNNGC	4 cut(s)	380, 385, 455, 488
NciI	CCSGG	3 cut(s)	162, 630, 631
NdeII	GATC	3 cut(s)	157, 520, 745
NlaIII	CATG	6 cut(s)	83, 294, 443, 601, 622, 712
NlaIV	GGNNCC	2 cut(s)	533, 714
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	622
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	38, 86
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	533, 714
PspPI	GGNCC	3 cut(s)	52, 164, 627
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	727
RsaNI	GTAC	1 cut(s)	726
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	3 cut(s)	157, 520, 745
Sau96I	GGNCC	3 cut(s)	52, 164, 627
ScrFI	CCNGG	3 cut(s)	162, 630, 631
SduI	GDGCHC	2 cut(s)	224, 498
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	2 cut(s)	316, 489
SinI	GGWCC	1 cut(s)	164
SmaI	CCCGGG	1 cut(s)	631
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	3 cut(s)	26, 212, 671
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	2 cut(s)	234, 417
StyD4I	CCNGG	3 cut(s)	160, 628, 629
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	65
TasI	AATT	3 cut(s)	26, 212, 671
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	38, 86
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	3 cut(s)	214, 244, 498
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	96, 557, 586, 707
TspMI	CCCGGG	1 cut(s)	629
TspRI	CASTG	3 cut(s)	214, 244, 498
VneI	GTGCAC	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	622
XmaI	CCCGGG	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	413
XspI	CTAG	2 cut(s)	234, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.