Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006539

Physical Location & Seq

Genomic Coordinates Reverse (-)

62768378 .. 62772127

Gene Structure 3750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGATAACAGTGCCAAACTTGAACTTGGAATTTGAGAGTGATAATTTAGAAGTCACAAGCCAAGGAACTTCCAACAACATAGCTCAGCAAGACGAAACCCCTGATCCCTCCAAGGACAGCACCACTACTTCTTCCTGTCTTACAAATCAGACAAACCTTGAACAGAATCCTGGGCCTATGTTCCTTGACTTATCACTCCAATTTAGCTCCAATGACCTCGAATTGAAGGGCATGGCAGGGGAGACTAACAGTGAAATAGAAGCAGCGCCTGATTCAGAAGCAGCAATTCCAAGGGTATTCTCGTGCAACTACTGTAAGCGCAAGTTCTTTAGCTCTCAAGCATTGGGCGGACATCAGAATGCTCATAAGAGGGAGAGGACAATGGCAAAGCGTGCATTGCGGATGGGAATGTTTCCTGATCACAGGTATACTAGCTTGGCATCTCTTCCCCTACACGGTTCTTCTGCTTCTGCCTTCCGGTCTCTTGGGATCGAAGCTCACGCTGCAATGCACCAAAACATGTTGATACAACCAGACCAGAGGCTACCTGTTCCTGACACAAGAGGTGTAGCAAGGTTTCAGCAGCAAGGCTACTATGGAGTGCCGATGCCAATGCCACCAATGCCAATGTTCGTGGAAGATGATGATGTGGGTATGTTTTGGCCCGGGAGCTTTCGACAGGTGGGTGAGGGAATCCGAGGTCATTTCAATGTGGATCAATATGCCCAAAATTCACGAATGATCAATTCAGGAAGGACCATGCCACCAAAAAGTAGTACAAGTTCGTCATCTTCTTCACCTGATCTTACTTTAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

30.1

Weight (kDa)

5.64

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24625
fragaria_vesca	FvH4_4g33120 FvH4_4g33120 FvH4_4g33120 FvH4_4g33120
malus_domestica	MD13G1016900.v1.1 MD16G1014800.v1.1
prunus_persica	Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1
pyrus_communis	pycom13g01460 pycom16g01360
rosa_chinensis	RchiOBHm_Chr4g0442171
rosa_laevigata	RLG00000006033
rosa_multiflora	Rmu_sc0010284.1_g000008
rosa_roxburghii	Rroxscaffold_5G00383080
rosa_rugosa	Rorug04G0339300 Rorug04G0339300
rosa_samantha	Rh4AG391000 Rh4BG404600 Rh4CG419600 Rh4DG397600
rosa_wichuraiana	Rw4G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	428
AciI	CCGC	2 cut(s)	348, 400
AclWI	GGATC	3 cut(s)	98, 497, 723
AcsI	RAATTY	2 cut(s)	29, 730
AfaI	GTAC	1 cut(s)	778
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	4 cut(s)	22, 161, 226, 709
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	7 cut(s)	83, 207, 333, 435, 497, 672, 817
AluI	AGCT	7 cut(s)	83, 207, 333, 435, 497, 672, 817
Alw26I	GTCTC	2 cut(s)	236, 486
AlwI	GGATC	3 cut(s)	98, 497, 723
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	2 cut(s)	173, 662
ApeKI	GCWGC	4 cut(s)	263, 281, 503, 583
ApoI	RAATTY	2 cut(s)	29, 730
AspLEI	GCGC	2 cut(s)	268, 321
AspS9I	GGNCC	3 cut(s)	173, 663, 756
AsuC2I	CCSGG	2 cut(s)	666, 667
AsuHPI	GGTGA	2 cut(s)	698, 789
AvaI	CYCGRG	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	756
BauI	CACGAG	1 cut(s)	301
BbvI	GCAGC	4 cut(s)	275, 293, 490, 595
BccI	CCATC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	2 cut(s)	418, 741
BcnI	CCSGG	2 cut(s)	666, 667
BcoDI	GTCTC	2 cut(s)	236, 486
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	4 cut(s)	264, 282, 504, 584
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	4 cut(s)	265, 283, 505, 585
Bme1390I	CCNGG	3 cut(s)	171, 666, 667
Bme18I	GGWCC	1 cut(s)	756
BmeT110I	CYCGRG	1 cut(s)	665
BmgT120I	GGNCC	3 cut(s)	173, 663, 756
BmrFI	CCNGG	3 cut(s)	171, 666, 667
BmsI	GCATC	2 cut(s)	449, 597
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	321
BpuMI	CCSGG	2 cut(s)	666, 667
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	6 cut(s)	61, 111, 170, 290, 665, 697
BsaWI	WCCGGW	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	395, 513
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	6 cut(s)	61, 111, 170, 290, 665, 697
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	2 cut(s)	395, 513
BseMII	CTCAG	1 cut(s)	98
BseXI	GCAGC	4 cut(s)	275, 293, 490, 595
BshFI	GGCC	2 cut(s)	175, 664
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	2 cut(s)	478, 666
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	236, 486
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	175, 664
Bso31I	GGTCTC	1 cut(s)	486
BsoBI	CYCGRG	1 cut(s)	665
Bsp143I	GATC	6 cut(s)	103, 418, 489, 715, 741, 802
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	348, 400
BspANI	GGCC	2 cut(s)	175, 664
BspCNI	CTCAG	1 cut(s)	97
BspPI	GGATC	3 cut(s)	98, 497, 723
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	2 cut(s)	395, 513
BssECI	CCNNGG	6 cut(s)	61, 111, 170, 290, 665, 697
BssMI	GATC	6 cut(s)	103, 418, 489, 715, 741, 802
BssNAI	GTATAC	1 cut(s)	429
BssSI	CACGAG	1 cut(s)	301
BssT1I	CCWWGG	3 cut(s)	61, 111, 290
Bst1107I	GTATAC	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	4 cut(s)	10, 251, 314, 458
Bst6I	CTCTTC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	408
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 321
BstKTI	GATC	6 cut(s)	106, 421, 492, 718, 744, 805
BstMAI	GTCTC	2 cut(s)	236, 486
BstMBI	GATC	6 cut(s)	103, 418, 489, 715, 741, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	392, 397, 503, 622
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	3 cut(s)	169, 664, 665
BstV1I	GCAGC	4 cut(s)	275, 293, 490, 595
BstZ17I	GTATAC	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	175, 664
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	15, 256
Cac8I	GCNNGC	1 cut(s)	393
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	2 cut(s)	268, 321
Cfr13I	GGNCC	3 cut(s)	173, 663, 756
Cfr9I	CCCGGG	1 cut(s)	665
Csp6I	GTAC	1 cut(s)	777
CspCI	CAANNNNNGTGG	2 cut(s)	615, 650
CviAII	CATG	3 cut(s)	232, 520, 760
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	6 cut(s)	105, 420, 491, 717, 743, 804
DpnII	GATC	6 cut(s)	103, 418, 489, 715, 741, 802
DraI	TTTAAA	1 cut(s)	813
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	1 cut(s)	363
Eco130I	CCWWGG	3 cut(s)	61, 111, 290
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	756
Eco88I	CYCGRG	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	3 cut(s)	61, 111, 290
ErhI	CCWWGG	3 cut(s)	61, 111, 290
FaeI	CATG	3 cut(s)	235, 523, 763
FatI	CATG	3 cut(s)	231, 519, 759
FbaI	TGATCA	2 cut(s)	418, 741
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	4 cut(s)	264, 282, 504, 584
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	4 cut(s)	264, 282, 504, 584
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	2 cut(s)	267, 320
GluI	GCNGC	4 cut(s)	264, 282, 504, 584
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	175, 664
HapII	CCGG	2 cut(s)	478, 666
HhaI	GCGC	2 cut(s)	268, 321
Hin1II	CATG	3 cut(s)	235, 523, 763
Hin6I	GCGC	2 cut(s)	266, 319
HinP1I	GCGC	2 cut(s)	266, 319
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	3 cut(s)	166, 272, 693
HpaII	CCGG	2 cut(s)	478, 666
HphI	GGTGA	2 cut(s)	698, 789
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	4 cut(s)	150, 277, 357, 698
Hpy188III	TCNNGA	4 cut(s)	416, 554, 735, 750
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	3 cut(s)	220, 484, 747
HpyCH4III	ACNGT	4 cut(s)	10, 251, 314, 458
HpyCH4V	TGCA	4 cut(s)	306, 395, 506, 511
HpyF10VI	GCNNNNNNNGC	4 cut(s)	392, 397, 503, 622
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	235, 523, 763
HspAI	GCGC	2 cut(s)	266, 319
Ksp22I	TGATCA	2 cut(s)	418, 741
Kzo9I	GATC	6 cut(s)	103, 418, 489, 715, 741, 802
LmnI	GCTCC	2 cut(s)	212, 669
Lsp1109I	GCAGC	4 cut(s)	275, 293, 490, 595
LweI	GCATC	2 cut(s)	449, 597
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	6 cut(s)	105, 420, 491, 717, 743, 804
MboI	GATC	6 cut(s)	103, 418, 489, 715, 741, 802
MboII	GAAGA	6 cut(s)	123, 437, 453, 650, 783, 786
MluCI	AATT	7 cut(s)	29, 43, 200, 221, 285, 730, 745
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	8 cut(s)	118, 227, 363, 369, 534, 557, 682, 692
MseI	TTAA	1 cut(s)	812
MslI	CAYNNNNRTG	2 cut(s)	357, 708
MspI	CCGG	2 cut(s)	478, 666
MspR9I	CCNGG	3 cut(s)	171, 666, 667
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	4 cut(s)	392, 397, 503, 622
NciI	CCSGG	2 cut(s)	666, 667
NdeII	GATC	6 cut(s)	103, 418, 489, 715, 741, 802
NlaIII	CATG	3 cut(s)	235, 523, 763
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	523
PciI	ACATGT	1 cut(s)	519
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	166, 272, 693
PkrI	GCNGC	4 cut(s)	265, 283, 505, 585
PscI	ACATGT	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspPI	GGNCC	3 cut(s)	173, 663, 756
PsrI	GAACNNNNNNTAC	2 cut(s)	766, 798
PstNI	CAGNNNCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	2 cut(s)	357, 708
SaqAI	TTAA	1 cut(s)	812
SatI	GCNGC	4 cut(s)	264, 282, 504, 584
Sau3AI	GATC	6 cut(s)	103, 418, 489, 715, 741, 802
Sau96I	GGNCC	3 cut(s)	173, 663, 756
ScrFI	CCNGG	3 cut(s)	171, 666, 667
SfaNI	GCATC	2 cut(s)	449, 597
SinI	GGWCC	1 cut(s)	756
SmaI	CCCGGG	1 cut(s)	667
SmiMI	CAYNNNNRTG	2 cut(s)	357, 708
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	7 cut(s)	29, 43, 200, 221, 285, 730, 745
SsiI	CCGC	2 cut(s)	348, 400
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	169, 664, 665
StyI	CCWWGG	3 cut(s)	61, 111, 290
TaaI	ACNGT	4 cut(s)	10, 251, 314, 458
TaqI	TCGA	3 cut(s)	219, 492, 676
TasI	AATT	7 cut(s)	29, 43, 200, 221, 285, 730, 745
TatI	WGTACW	1 cut(s)	776
TfiI	GAWTC	3 cut(s)	166, 272, 693
Tru1I	TTAA	1 cut(s)	812
Tru9I	TTAA	1 cut(s)	812
TscAI	CASTG	2 cut(s)	15, 256
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	263, 281, 503, 583
Tsp45I	GTSAC	1 cut(s)	52
TspMI	CCCGGG	1 cut(s)	665
TspRI	CASTG	2 cut(s)	15, 256
VpaK11BI	GGWCC	1 cut(s)	756
XapI	RAATTY	2 cut(s)	29, 730
XceI	RCATGY	1 cut(s)	523
XmaI	CCCGGG	1 cut(s)	665
XmiI	GTMKAC	1 cut(s)	428
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.