Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006539

Physical Location & Seq

Genomic Coordinates Reverse (-)

1079595 .. 1082639

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1016900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTAACACAAAACTTGAACTTGGAATTTGAAAATGATTCAGAAGTCACGAGCCAAGTAACTTATTCGAGCATACCTCTGCAAGAAGAATCTCCTGACCCCTCTAAGGACAGCACAACCACTTCTTCGTGCCTCACAAATCAGAAGCATCAACAACAAGATCCCCGGCCTGTTTCCCTTCACTTGACACTCCAGTTTAGCTCAGGCGACACTGAATTGAAGGGCACGGGGGAGACTAGCAGTGAAGCAGCTGCACCCCCTACTTCAGAAGGAACAATCCCAAGGGTATTCTCATGCAACTACTGTAAGCGTAAGTTCTATAGCTCACAGGCACTCGGTGGCCATCAGAATGCTCATAAGAGGGAGAGGACAATGGCCAAGCGTGCTATGCGTATGGGAATGTTTCCCGATAGGTATACTAGCTTGGCATCTCTCCCCTTACATCGTTCTGCGCCTTCAGCGTTCCGGTCTCTTGGTATCCAAGCTCATTCTGCAGTGCACCAAAACACTATGATAACATCAGATCATCAGAGGTTCCTTGTCCCCGACACAAGAGGCGTAGCAAGGTTTCGTCAGGGCTATTTTGGAGTGCCGATGTTTATGGACGAGGATGATGTGGGCATGTTTTGGCCCGGGAGTTTCCGACAGGTGGGTGAGGGAGCTGGAGGTCATCAATTAGCCCAAAATCCAAATATGAATACAGGAACAAGCATGGAACCAAGAAATAGTACAAGTTCGTCTTCACCCGATCTTTCTCTAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.12

Weight (kDa)

6.75

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24625
fragaria_vesca	FvH4_4g33120 FvH4_4g33120 FvH4_4g33120 FvH4_4g33120
malus_domestica	MD13G1016900.v1.1 MD16G1014800.v1.1
prunus_persica	Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1 Prupe.1G336500_v2.0.a1
pyrus_communis	pycom13g01460 pycom16g01360
rosa_chinensis	RchiOBHm_Chr4g0442171
rosa_laevigata	RLG00000006033
rosa_multiflora	Rmu_sc0010284.1_g000008
rosa_roxburghii	Rroxscaffold_5G00383080
rosa_rugosa	Rorug04G0339300 Rorug04G0339300
rosa_samantha	Rh4AG391000 Rh4BG404600 Rh4CG419600 Rh4DG397600
rosa_wichuraiana	Rw4G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	416
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	2 cut(s)	340, 375
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	2 cut(s)	249, 441
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	2 cut(s)	106, 649
AgsI	TTSAA	3 cut(s)	19, 32, 220
AluBI	AGCT	7 cut(s)	201, 251, 324, 423, 485, 662, 763
AluI	AGCT	7 cut(s)	201, 251, 324, 423, 485, 662, 763
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	2 cut(s)	227, 474
Alw44I	GTGCAC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	4 cut(s)	167, 340, 375, 629
ApaLI	GTGCAC	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	248, 251
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	630
AsuC2I	CCSGG	3 cut(s)	166, 633, 634
AsuHPI	GGTGA	2 cut(s)	665, 735
AvaI	CYCGRG	1 cut(s)	632
BaeGI	GKGCMC	2 cut(s)	227, 501
BalI	TGGCCA	2 cut(s)	342, 377
BauI	CACGAG	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	2 cut(s)	238, 260
BccI	CCATC	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	488
BcnI	CCSGG	3 cut(s)	166, 633, 634
BcoDI	GTCTC	2 cut(s)	227, 474
BfaI	CTAG	2 cut(s)	237, 420
BfmI	CTRYAG	2 cut(s)	319, 492
BfuI	GTATCC	1 cut(s)	488
BisI	GCNGC	2 cut(s)	249, 252
BlsI	GCNGC	2 cut(s)	250, 253
Bme1390I	CCNGG	3 cut(s)	166, 633, 634
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	630
BmiI	GGNNCC	2 cut(s)	536, 717
BmrFI	CCNGG	3 cut(s)	166, 633, 634
BmsI	GCATC	2 cut(s)	157, 437
BpiI	GAAGAC	1 cut(s)	732
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	2 cut(s)	176, 684
Bpu10I	CCTNAGC	1 cut(s)	202
BpuMI	CCSGG	3 cut(s)	166, 633, 634
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	164, 281, 632
BsaWI	WCCGGW	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 649
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	3 cut(s)	164, 281, 632
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	106, 649
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	193
BseSI	GKGCMC	2 cut(s)	227, 501
BseXI	GCAGC	2 cut(s)	238, 260
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	169, 342, 377, 631
BsiHKAI	GWGCWC	1 cut(s)	501
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	3 cut(s)	166, 466, 633
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	106, 649
BsmAI	GTCTC	2 cut(s)	227, 474
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	4 cut(s)	169, 342, 377, 631
Bso31I	GGTCTC	1 cut(s)	474
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	2 cut(s)	227, 501
Bsp143I	GATC	3 cut(s)	160, 523, 748
BspANI	GGCC	4 cut(s)	169, 342, 377, 631
BspCNI	CTCAG	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	536, 717
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	164, 281, 632
BssMI	GATC	3 cut(s)	160, 523, 748
BssNAI	GTATAC	1 cut(s)	417
BssSI	CACGAG	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	281
Bst1107I	GTATAC	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	105, 202
BstF5I	GGATG	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	3 cut(s)	163, 526, 751
BstMAI	GTCTC	2 cut(s)	227, 474
BstMBI	GATC	3 cut(s)	160, 523, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	383, 388, 458, 491
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	3 cut(s)	164, 631, 632
BstSFI	CTRYAG	2 cut(s)	319, 492
BstSLI	GKGCMC	2 cut(s)	227, 501
BstV1I	GCAGC	2 cut(s)	238, 260
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BstZ17I	GTATAC	1 cut(s)	417
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	4 cut(s)	169, 342, 377, 631
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	2 cut(s)	247, 501
BtsIMutI	CAGTG	3 cut(s)	210, 247, 501
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	630
Cfr9I	CCCGGG	1 cut(s)	632
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	3 cut(s)	294, 622, 712
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	2 cut(s)	105, 202
DpnI	GATC	3 cut(s)	162, 525, 750
DpnII	GATC	3 cut(s)	160, 523, 748
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	2 cut(s)	340, 375
Eco130I	CCWWGG	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	474
Eco57I	CTGAAG	2 cut(s)	249, 441
Eco88I	CYCGRG	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	3 cut(s)	297, 625, 715
FalI	AAGNNNNNCTT	2 cut(s)	724, 756
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	3 cut(s)	293, 621, 711
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	249, 252
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	2 cut(s)	249, 252
FspBI	CTAG	2 cut(s)	237, 420
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	2 cut(s)	249, 252
GsuI	CTGGAG	2 cut(s)	176, 684
HaeIII	GGCC	4 cut(s)	169, 342, 377, 631
HapII	CCGG	3 cut(s)	166, 466, 633
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	3 cut(s)	297, 625, 715
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	2 cut(s)	38, 89
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	3 cut(s)	166, 466, 633
HphI	GGTGA	2 cut(s)	665, 735
Hpy166II	GTNNAC	3 cut(s)	6, 417, 499
Hpy188I	TCNGA	7 cut(s)	43, 144, 268, 348, 523, 531, 644
Hpy188III	TCNNGA	3 cut(s)	49, 95, 407
Hpy8I	GTNNAC	3 cut(s)	6, 417, 499
HpyAV	CCTTC	4 cut(s)	188, 214, 263, 465
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	5 cut(s)	82, 254, 297, 494, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	383, 388, 458, 491
HpyF3I	CTNAG	2 cut(s)	105, 202
Hsp92II	CATG	3 cut(s)	297, 625, 715
HspAI	GCGC	1 cut(s)	452
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	160, 523, 748
LmnI	GCTCC	1 cut(s)	659
Lsp1109I	GCAGC	2 cut(s)	238, 260
LweI	GCATC	2 cut(s)	157, 437
MaeI	CTAG	2 cut(s)	237, 420
MaeIII	GTNAC	2 cut(s)	46, 58
MalI	GATC	3 cut(s)	162, 525, 750
MboI	GATC	3 cut(s)	160, 523, 748
MboII	GAAGA	3 cut(s)	98, 117, 732
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	2 cut(s)	227, 501
MlsI	TGGCCA	2 cut(s)	342, 377
MluCI	AATT	3 cut(s)	26, 215, 674
MluNI	TGGCCA	2 cut(s)	342, 377
MmeI	TCCRAC	1 cut(s)	667
Mox20I	TGGCCA	2 cut(s)	342, 377
MscI	TGGCCA	2 cut(s)	342, 377
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	2 cut(s)	342, 377
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	3 cut(s)	166, 466, 633
MspR9I	CCNGG	3 cut(s)	166, 633, 634
Mva1269I	GAATGC	1 cut(s)	355
MwoI	GCNNNNNNNGC	4 cut(s)	383, 388, 458, 491
NciI	CCSGG	3 cut(s)	166, 633, 634
NdeII	GATC	3 cut(s)	160, 523, 748
NlaIII	CATG	3 cut(s)	297, 625, 715
NlaIV	GGNNCC	2 cut(s)	536, 717
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	625
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	38, 89
PkrI	GCNGC	2 cut(s)	250, 253
PspN4I	GGNNCC	2 cut(s)	536, 717
PspPI	GGNCC	1 cut(s)	630
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	2 cut(s)	249, 252
Sau3AI	GATC	3 cut(s)	160, 523, 748
Sau96I	GGNCC	1 cut(s)	630
ScrFI	CCNGG	3 cut(s)	166, 633, 634
SduI	GDGCHC	2 cut(s)	227, 501
SfaNI	GCATC	2 cut(s)	157, 437
SfcI	CTRYAG	2 cut(s)	319, 492
SmaI	CCCGGG	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	26, 215, 674
SspMI	CTAG	2 cut(s)	237, 420
StyD4I	CCNGG	3 cut(s)	164, 631, 632
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	68
TasI	AATT	3 cut(s)	26, 215, 674
TatI	WGTACW	1 cut(s)	728
TfiI	GAWTC	2 cut(s)	38, 89
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	3 cut(s)	217, 247, 501
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	248, 251
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	710
TspMI	CCCGGG	1 cut(s)	632
TspRI	CASTG	3 cut(s)	217, 247, 501
VneI	GTGCAC	1 cut(s)	497
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	625
XmaI	CCCGGG	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	416
XspI	CTAG	2 cut(s)	237, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.