AT1G26480

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016506
Physical Location & Seq
Reverse (-)
9156279 .. 9158093
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26480.1

Sequence Viewer

Length: 807 bp
ATGTCATCATCAGGATCCGACAAAGAGAGAGAGACTTTTGTCTATATGGCTAAGCTCTCCGAACAAGCCGAGCGATACGACGAGATGGTGGAGACGATGAAGAAAGTGGCGAGGGTTAATAGCGAGCTGACTGTGGAAGAGAGGAATCTGTTGTCGGTTGGTTACAAGAACGTGATCGGAGCAAGAAGAGCTTCGTGGAGGATAATGTCGTCCATCGAGCAGAAAGAAGAGTCTAAAGGCAATGAATCAAACGTGAAACAAATCAAGGGTTATCGCCAAAAGGTAGAAGATGAGCTCGCTAACATTTGCCAAGACATTCTCACCATCATTGATCAGCATCTCATCCCTCACGCTACCTCAGGGGAAGCTACCGTCTTCTACTACAAGATGAAAGGAGATTATTACCGTTACTTGGCTGAGTTTAAGACCGAGCAAGAGAGGAAGGAAGCTGCTGAACAGTCTCTCAAAGGCTATGAGGCTGCAACACAAGCTGCAAGCACTGAGCTTCCTTCGACCCATCCAATTCGTCTTGGCCTTGCTCTTAACTTCTCTGTTTTCTACTATGAGATCATGAACTCTCCTGAAAGAGCTTGCCATTTGGCTAAGCAAGCCTTCGATGAGGCGATTGCAGAGTTAGATACTCTAAGTGAGGAGTCGTACAAGGACAGCACTTTGATCATGCAGCTCCTGAGAGACAACCTCACCCTCTGGACTTCTGATCTTCCTGAAGATGGAGGAGAAGACAACATCAAGACTGAAGAATCCAAGCAAGAACAGGCCAAGCCTGCCGATGCCACTGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

268

Amino Acids

30.54

Weight (kDa)

4.83

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
14-3-3 PF00244 16 - 238 3.4e-109 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26480
fragaria_vesca FvH4_4g30210
malus_domestica MD13G1063600.v1.1 MD16G1062100.v1.1
prunus_persica Prupe.1G285800_v2.0.a1
pyrus_communis pycom13g05620
rosa_chinensis RchiOBHm_Chr4g0438531
rosa_laevigata RLG00000006354
rosa_multiflora Rmu_sc0002327.1_g000007
rosa_roxburghii Rroxscaffold_5G00379530
rosa_rugosa Rorug04G0311100
rosa_samantha Rh4DG367600
rosa_wichuraiana Rw0G006620 Rw0G016570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 9, 22
AcuI CTGAAG 2 cut(s) 747, 777
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 2 cut(s) 412, 731
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 4 cut(s) 26, 86, 465, 687
AlwI GGATC 2 cut(s) 9, 22
AlwNI CAGNNNCTG 1 cut(s) 688
AoxI GGCC 2 cut(s) 532, 777
ApeKI GCWGC 4 cut(s) 449, 479, 491, 682
Asp700I GAANNNNTTC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 313, 694
AxyI CCTNAGG 1 cut(s) 358
BamHI GGATCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 297
BbsI GAAGAC 2 cut(s) 367, 747
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 4 cut(s) 436, 466, 478, 694
BccI CCATC 5 cut(s) 79, 221, 332, 525, 725
BclI TGATCA 2 cut(s) 331, 675
BcoDI GTCTC 4 cut(s) 26, 86, 465, 687
BisI GCNGC 4 cut(s) 450, 480, 492, 683
BlpI GCTNAGC 2 cut(s) 51, 603
BlsI GCNGC 4 cut(s) 451, 481, 493, 684
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 2 cut(s) 346, 781
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 2 cut(s) 367, 747
BplI GAGNNNNNCTC 2 cut(s) 684, 716
Bpu1102I GCTNAGC 2 cut(s) 51, 603
BsaBI GATNNNNATC 1 cut(s) 336
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 731
Bse21I CCTNAGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 336
BseGI GGATG 2 cut(s) 342, 517
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 412, 731
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 5 cut(s) 372, 408, 492, 680, 789
BseRI GAGGAG 2 cut(s) 665, 750
BseXI GCAGC 4 cut(s) 436, 466, 478, 694
BshFI GGCC 2 cut(s) 534, 779
BsiHKAI GWGCWC 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 412, 731
BsmAI GTCTC 4 cut(s) 26, 86, 465, 687
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 2 cut(s) 534, 779
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 6 cut(s) 14, 174, 331, 567, 675, 718
Bsp1720I GCTNAGC 2 cut(s) 51, 603
BspANI GGCC 2 cut(s) 534, 779
BspCNI CTCAG 5 cut(s) 371, 409, 493, 681, 790
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 2 cut(s) 9, 22
BspQI GCTCTTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 247
BssMI GATC 6 cut(s) 14, 174, 331, 567, 675, 718
Bst4CI ACNGT 4 cut(s) 133, 373, 407, 459
Bst6I CTCTTC 3 cut(s) 132, 181, 222
BstC8I GCNNGC 6 cut(s) 125, 297, 496, 592, 609, 786
BstDEI CTNAG 8 cut(s) 51, 358, 417, 501, 603, 644, 689, 798
BstF5I GGATG 2 cut(s) 342, 517
BstKTI GATC 6 cut(s) 17, 177, 334, 570, 678, 721
BstMAI GTCTC 4 cut(s) 26, 86, 465, 687
BstMBI GATC 6 cut(s) 14, 174, 331, 567, 675, 718
BstMWI GCNNNNNNNGC 4 cut(s) 188, 488, 608, 785
BstPAI GACNNNNGTC 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 436, 466, 478, 694
BstV2I GAAGAC 2 cut(s) 367, 747
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
Bsu36I CCTNAGG 1 cut(s) 358
BsuRI GGCC 2 cut(s) 534, 779
BtsCI GGATG 2 cut(s) 342, 517
BtsIMutI CAGTG 2 cut(s) 498, 795
Cac8I GCNNGC 6 cut(s) 125, 297, 496, 592, 609, 786
CaiI CAGNNNCTG 1 cut(s) 688
CciI TCATGA 1 cut(s) 570
Csp6I GTAC 1 cut(s) 658
CviAII CATG 2 cut(s) 571, 679
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 8 cut(s) 51, 358, 417, 501, 603, 644, 689, 798
DpnI GATC 6 cut(s) 16, 176, 333, 569, 677, 720
DpnII GATC 6 cut(s) 14, 174, 331, 567, 675, 718
Eam1104I CTCTTC 3 cut(s) 132, 181, 222
EarI CTCTTC 3 cut(s) 132, 181, 222
Ecl136II GAGCTC 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 747, 777
Eco81I CCTNAGG 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 2 cut(s) 574, 682
FaiI YATR 6 cut(s) 45, 47, 474, 564, 572, 680
FalI AAGNNNNNCTT 4 cut(s) 175, 207, 596, 628
FatI CATG 2 cut(s) 570, 678
FbaI TGATCA 2 cut(s) 331, 675
Fnu4HI GCNGC 4 cut(s) 450, 480, 492, 683
FokI GGATG 2 cut(s) 329, 504
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 4 cut(s) 450, 480, 492, 683
GluI GCNGC 4 cut(s) 450, 480, 492, 683
HaeIII GGCC 2 cut(s) 534, 779
Hin1II CATG 2 cut(s) 574, 682
HinfI GANTC 5 cut(s) 145, 230, 245, 653, 761
HphI GGTGA 2 cut(s) 313, 694
Hpy188I TCNGA 4 cut(s) 19, 61, 179, 718
Hpy188III TCNNGA 7 cut(s) 12, 571, 581, 688, 709, 725, 751
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 436, 519, 622
HpyCH4III ACNGT 4 cut(s) 133, 373, 407, 459
HpyCH4IV ACGT 2 cut(s) 171, 252
HpyCH4V TGCA 4 cut(s) 482, 494, 629, 682
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 488, 608, 785
HpyF3I CTNAG 8 cut(s) 51, 358, 417, 501, 603, 644, 689, 798
HpySE526I ACGT 2 cut(s) 171, 252
Hsp92II CATG 2 cut(s) 574, 682
Ksp22I TGATCA 2 cut(s) 331, 675
Kzo9I GATC 6 cut(s) 14, 174, 331, 567, 675, 718
LguI GCTCTTC 1 cut(s) 181
LmnI GCTCC 2 cut(s) 179, 690
LpnPI CCDG 7 cut(s) 345, 594, 694, 701, 738, 761, 798
Lsp1109I GCAGC 4 cut(s) 436, 466, 478, 694
LweI GCATC 2 cut(s) 346, 781
MaeII ACGT 2 cut(s) 171, 252
MaeIII GTNAC 2 cut(s) 161, 407
MalI GATC 6 cut(s) 16, 176, 333, 569, 677, 720
MboI GATC 6 cut(s) 14, 174, 331, 567, 675, 718
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 1 cut(s) 522
MlyI GAGTC 2 cut(s) 239, 662
MmeI TCCRAC 1 cut(s) 42
MroXI GAANNNNTTC 1 cut(s) 190
MseI TTAA 3 cut(s) 117, 423, 543
MwoI GCNNNNNNNGC 4 cut(s) 188, 488, 608, 785
NdeII GATC 6 cut(s) 14, 174, 331, 567, 675, 718
NlaIII CATG 2 cut(s) 574, 682
NlaIV GGNNCC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 94
PagI TCATGA 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 3 cut(s) 145, 245, 761
PkrI GCNGC 4 cut(s) 451, 481, 493, 684
PleI GAGTC 2 cut(s) 238, 661
PpsI GAGTC 2 cut(s) 238, 661
PshAI GACNNNNGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
SacI GAGCTC 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 181
SaqAI TTAA 3 cut(s) 117, 423, 543
SatI GCNGC 4 cut(s) 450, 480, 492, 683
Sau3AI GATC 6 cut(s) 14, 174, 331, 567, 675, 718
SchI GAGTC 2 cut(s) 239, 662
SduI GDGCHC 1 cut(s) 297
SfaNI GCATC 2 cut(s) 346, 781
Sse9I AATT 1 cut(s) 522
SstI GAGCTC 1 cut(s) 297
TaaI ACNGT 4 cut(s) 133, 373, 407, 459
TaiI ACGT 2 cut(s) 174, 255
TaqI TCGA 3 cut(s) 216, 512, 615
TaqII GACCGA 1 cut(s) 443
TasI AATT 1 cut(s) 522
TfiI GAWTC 3 cut(s) 145, 245, 761
Tru1I TTAA 3 cut(s) 117, 423, 543
Tru9I TTAA 3 cut(s) 117, 423, 543
TscAI CASTG 2 cut(s) 505, 802
TseI GCWGC 4 cut(s) 449, 479, 491, 682
TspDTI ATGAA 4 cut(s) 113, 258, 404, 587
TspRI CASTG 2 cut(s) 505, 802
XmnI GAANNNNTTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.