Rw0G006620

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00245
OG0016506
Physical Location & Seq
Reverse (-)
247621 .. 251873
4253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006620.1

Sequence Viewer

Length: 795 bp
ATGTCGTCGCCCGAGAAGGAGAGAGAGACCCAGGTTTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGTTACGAAGAAATGGTCGAGTGTATGAAGAAAGTTGCGAAGCTTGATCTTGAGCTGACTGTGGAAGAGAGGAATCTTTTGTCTGTGGGATACAAAAATGTGATAGGTGCTCGAAGGGCGTCTTGGCGCATCATGTCTTCCATTGAGCAAAAGGAAGAGTCTAAAGGGAATGAGCACAATGTCAAACTGATCAAGAGTTACCGCCAGAAGGTGGAGGAGGAACTCTCCAAGATATGCAGTGACATTCTCACTATCATTGACAAGCACCTGATTCCCTCTTCCAGCTCCGGAGAGGCCACTGTTTTCTACTACAAGATGAAAGGTGACTATTACCGGTACCTTGCTGAGTTCAAGACTGACCAGGACAGAAAAGAGGCAGCTGACCAGTCACTCAAGGGATATGAGGCTGCTTCAGCCACTGCAAACACAGATCTCCCATCGACCCACCCAATCCGTCTTGGTCTAGCTCTCAACTTCTCTGTCTTCTACTATGAGATTATGAATTCTCCCGAGAGGGCTTGTCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGACACCCTGAGTGAGGAGTCATACAAGGACAGCACCCTTATCATGCAACTGTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAGGTGATGACAATTTTAAAGCCGACGAAACCAAATCTATCGAACCTAATGCTGCTGCGGTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

264

Amino Acids

30.02

Weight (kDa)

4.9

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
14-3-3 PF00244 14 - 236 1.3e-108 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26480
fragaria_vesca FvH4_4g30210
malus_domestica MD13G1063600.v1.1 MD16G1062100.v1.1
prunus_persica Prupe.1G285800_v2.0.a1
pyrus_communis pycom13g05620
rosa_chinensis RchiOBHm_Chr4g0438531
rosa_laevigata RLG00000006354
rosa_multiflora Rmu_sc0002327.1_g000007
rosa_roxburghii Rroxscaffold_5G00379530
rosa_rugosa Rorug04G0311100
rosa_samantha Rh4DG367600
rosa_wichuraiana Rw0G006620 Rw0G016570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 402
AccB7I CCANNNNNTGG 1 cut(s) 277
AccIII TCCGGA 1 cut(s) 353
AciI CCGC 2 cut(s) 268, 785
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 2 cut(s) 462, 741
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 4 cut(s) 274, 277, 643, 725
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 2 cut(s) 30, 426
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 7 cut(s) 49, 109, 121, 351, 446, 533, 605
AluI AGCT 7 cut(s) 49, 109, 121, 351, 446, 533, 605
Alw21I GWGCWC 2 cut(s) 178, 243
Alw26I GTCTC 2 cut(s) 20, 681
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 2 cut(s) 11, 575
Aor13HI TCCGGA 1 cut(s) 353
AoxI GGCC 3 cut(s) 42, 60, 360
ApeKI GCWGC 4 cut(s) 443, 473, 779, 782
ApoI RAATTY 1 cut(s) 568
ArsI GACNNNNNNTTYG 4 cut(s) 66, 98, 697, 729
AsiGI ACCGGT 1 cut(s) 399
Asp718I GGTACC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 705
AsuHPI GGTGA 2 cut(s) 401, 743
AvaI CYCGRG 2 cut(s) 11, 575
AvaII GGWCC 1 cut(s) 705
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 402
BbsI GAAGAC 2 cut(s) 195, 541
Bbv12I GWGCWC 2 cut(s) 178, 243
BbvI GCAGC 4 cut(s) 455, 460, 766, 769
BccI CCATC 2 cut(s) 511, 719
BcgI CGANNNNNNTGC 2 cut(s) 758, 792
BciT130I CCWGG 2 cut(s) 32, 428
BciVI GTATCC 1 cut(s) 149
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 20, 681
BfaI CTAG 1 cut(s) 530
BfuI GTATCC 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 496
BisI GCNGC 4 cut(s) 444, 474, 780, 783
BlsI GCNGC 4 cut(s) 445, 475, 781, 784
Bme1390I CCNGG 2 cut(s) 32, 428
Bme18I GGWCC 1 cut(s) 705
BmeT110I CYCGRG 2 cut(s) 11, 575
BmgT120I GGNCC 1 cut(s) 705
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 2 cut(s) 32, 428
BmsI GCATC 1 cut(s) 204
BpiI GAAGAC 2 cut(s) 195, 541
BplI GAGNNNNNCTC 4 cut(s) 275, 307, 678, 710
BpuEI CTTGAG 2 cut(s) 137, 443
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 2 cut(s) 353, 399
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 277, 643, 725
Bse118I RCCGGY 1 cut(s) 399
Bse1I ACTGG 1 cut(s) 451
BseAI TCCGGA 1 cut(s) 353
BseBI CCWGG 2 cut(s) 32, 428
BseDI CCNNGG 1 cut(s) 30
BseLI CCNNNNNNNGG 4 cut(s) 274, 277, 643, 725
BseMII CTCAG 2 cut(s) 402, 629
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 2 cut(s) 296, 659
BseXI GCAGC 4 cut(s) 455, 460, 766, 769
BshFI GGCC 3 cut(s) 44, 62, 362
BshNI GGYRCC 1 cut(s) 402
BshTI ACCGGT 1 cut(s) 399
BsiHKAI GWGCWC 2 cut(s) 178, 243
BsiHKCI CYCGRG 2 cut(s) 11, 575
BsiSI CCGG 2 cut(s) 354, 400
BslI CCNNNNNNNGG 4 cut(s) 274, 277, 643, 725
BsmAI GTCTC 2 cut(s) 20, 681
BsnI GGCC 3 cut(s) 44, 62, 362
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 2 cut(s) 11, 575
Bsp1286I GDGCHC 2 cut(s) 178, 243
Bsp13I TCCGGA 1 cut(s) 353
Bsp143I GATC 3 cut(s) 112, 255, 496
BspACI CCGC 2 cut(s) 268, 785
BspANI GGCC 3 cut(s) 44, 62, 362
BspCNI CTCAG 2 cut(s) 403, 630
BspEI TCCGGA 1 cut(s) 353
BspHI TCATGA 1 cut(s) 791
BspLI GGNNCC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 402
BspTNI GGTCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 399
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 3 cut(s) 112, 255, 496
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 32, 428
Bst4CI ACNGT 3 cut(s) 127, 367, 681
Bst6I CTCTTC 3 cut(s) 126, 216, 349
BstACI GRCGYC 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 51, 60
BstDEI CTNAG 2 cut(s) 411, 638
BstENI CCTNNNNNAGG 1 cut(s) 641
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 3 cut(s) 115, 258, 499
BstMAI GTCTC 2 cut(s) 20, 681
BstMBI GATC 3 cut(s) 112, 255, 496
BstMWI GCNNNNNNNGC 7 cut(s) 50, 55, 59, 64, 182, 479, 602
BstNI CCWGG 2 cut(s) 32, 428
BstSCI CCNGG 2 cut(s) 30, 426
BstV1I GCAGC 4 cut(s) 455, 460, 766, 769
BstV2I GAAGAC 2 cut(s) 195, 541
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 3 cut(s) 44, 62, 362
BtsI GCAGTG 2 cut(s) 310, 483
BtsIMutI CAGTG 3 cut(s) 310, 363, 483
Cac8I GCNNGC 2 cut(s) 51, 60
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 1 cut(s) 791
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 705
CseI GACGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 403
CspAI ACCGGT 1 cut(s) 399
CviAII CATG 4 cut(s) 40, 199, 673, 792
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 411, 638
DpnI GATC 3 cut(s) 114, 257, 498
DpnII GATC 3 cut(s) 112, 255, 496
DraI TTTAAA 1 cut(s) 745
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 3 cut(s) 126, 216, 349
EarI CTCTTC 3 cut(s) 126, 216, 349
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 705
Eco57I CTGAAG 2 cut(s) 462, 741
Eco88I CYCGRG 2 cut(s) 11, 575
EcoNI CCTNNNNNAGG 1 cut(s) 641
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 2 cut(s) 30, 426
FaeI CATG 4 cut(s) 43, 202, 676, 795
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FatI CATG 4 cut(s) 39, 198, 672, 791
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 444, 474, 780, 783
Fsp4HI GCNGC 4 cut(s) 444, 474, 780, 783
FspBI CTAG 1 cut(s) 530
GlaI GCGC 1 cut(s) 194
GluI GCNGC 4 cut(s) 444, 474, 780, 783
HaeIII GGCC 3 cut(s) 44, 62, 362
HapII CCGG 2 cut(s) 354, 400
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 4 cut(s) 43, 202, 676, 795
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 107, 603
HinfI GANTC 4 cut(s) 139, 224, 337, 647
HpaII CCGG 2 cut(s) 354, 400
HphI GGTGA 2 cut(s) 401, 743
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 712
Hpy188III TCNNGA 7 cut(s) 116, 259, 354, 418, 575, 703, 792
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 2 cut(s) 10, 755
HpyAV CCTTC 3 cut(s) 10, 174, 268
HpyCH4III ACNGT 3 cut(s) 127, 367, 681
HpyCH4V TGCA 4 cut(s) 303, 488, 623, 676
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 55, 59, 64, 182, 479, 602
HpyF3I CTNAG 2 cut(s) 411, 638
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 4 cut(s) 43, 202, 676, 795
HspAI GCGC 1 cut(s) 193
Kpn2I TCCGGA 1 cut(s) 353
KpnI GGTACC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 3 cut(s) 112, 255, 496
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 4 cut(s) 455, 460, 766, 769
LweI GCATC 1 cut(s) 204
MaeI CTAG 1 cut(s) 530
MaeIII GTNAC 5 cut(s) 68, 263, 305, 389, 453
MalI GATC 3 cut(s) 114, 257, 498
MboI GATC 3 cut(s) 112, 255, 496
MboII GAAGA 8 cut(s) 86, 106, 143, 195, 233, 336, 541, 734
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 2 cut(s) 178, 243
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 3 cut(s) 568, 618, 739
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 2 cut(s) 233, 656
MmeI TCCRAC 1 cut(s) 609
Mox20I TGGCCA 1 cut(s) 44
MroI TCCGGA 1 cut(s) 353
MscI TGGCCA 1 cut(s) 44
MseI TTAA 1 cut(s) 744
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 2 cut(s) 354, 400
MspR9I CCNGG 2 cut(s) 32, 428
MunI CAATTG 1 cut(s) 618
MvaI CCWGG 2 cut(s) 32, 428
MwoI GCNNNNNNNGC 7 cut(s) 50, 55, 59, 64, 182, 479, 602
NdeII GATC 3 cut(s) 112, 255, 496
NlaIII CATG 4 cut(s) 43, 202, 676, 795
NlaIV GGNNCC 1 cut(s) 404
NmeAIII GCCGAG 2 cut(s) 79, 88
NmuCI GTSAC 3 cut(s) 305, 389, 453
PagI TCATGA 1 cut(s) 791
PfeI GAWTC 2 cut(s) 139, 337
PflMI CCANNNNNTGG 1 cut(s) 277
PinAI ACCGGT 1 cut(s) 399
PkrI GCNGC 4 cut(s) 445, 475, 781, 784
PleI GAGTC 2 cut(s) 232, 655
PpsI GAGTC 2 cut(s) 232, 655
Psp6I CCWGG 2 cut(s) 30, 426
PspGI CCWGG 2 cut(s) 30, 426
PspN4I GGNNCC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 705
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 4 cut(s) 444, 474, 780, 783
Sau3AI GATC 3 cut(s) 112, 255, 496
Sau96I GGNCC 1 cut(s) 705
SchI GAGTC 2 cut(s) 233, 656
ScrFI CCNGG 2 cut(s) 32, 428
SduI GDGCHC 2 cut(s) 178, 243
SfaNI GCATC 1 cut(s) 204
SinI GGWCC 1 cut(s) 705
SmlI CTYRAG 2 cut(s) 116, 458
SmoI CTYRAG 2 cut(s) 116, 458
Sse9I AATT 3 cut(s) 568, 618, 739
SsiI CCGC 2 cut(s) 268, 785
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 2 cut(s) 30, 426
TaaI ACNGT 3 cut(s) 127, 367, 681
TaqI TCGA 4 cut(s) 84, 178, 506, 768
TasI AATT 3 cut(s) 568, 618, 739
TfiI GAWTC 2 cut(s) 139, 337
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 3 cut(s) 310, 370, 490
TseFI GTSAC 3 cut(s) 305, 389, 453
TseI GCWGC 4 cut(s) 443, 473, 779, 782
Tsp45I GTSAC 3 cut(s) 305, 389, 453
TspDTI ATGAA 3 cut(s) 107, 398, 581
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 3 cut(s) 310, 370, 490
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 705
XagI CCTNNNNNAGG 1 cut(s) 641
XapI RAATTY 1 cut(s) 568
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.