Rmu_sc0002327.1_g000007

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002327.1
OG0016506
Physical Location & Seq
Forward (+)
30759 .. 32763
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002327.1_g000007.1.cds

Sequence Viewer

Length: 993 bp
atgctgaaaagcccctccgatagaagggcaagtattcaaaggcctctcgtgtctcacagagtcacaaattgcgcgcttcctctttcaaacacgcgaacggacggtccagatccggtcgtcctcaccccgcgacttgctcgaaccttaacaccggtttcaccaattgatcgtcttccgccttcgctcatttccgcgctagctgatcatcatctctcctgtgaaacgatgtcgtcgcccgagaaggagagagagacccaggtttacatggccaagctcgccgagcaggccgagcgttacgaaggtgcaactgtactcacactcggatctaaaatggtcgagtgtatgaagaaagttgcgaagcttgatcttgagctgactgtggaagagaggaatcttttgtctgtgggatacaaaaatgtgataggtgctcgaagggcgtcttggcgcatcatgtcttccattgagcaaaaggaagagtctaaagggaatgagcacaatgtcaaactgatcaagagttaccgccagaaggtggaggaggaactctccaagatatgcagtgacattctcactatcattgacaagcacctgattccctcttccagctccggagaggccactgttttctactacaagatgaaaggtgactattaccggtaccttgctgagttcaagactgaccaggacagaaaagaggcagctgaccagtcactcaagggatatgaggctgcttcagccactgcaaacacagatctcccatcgacccacccaatccgtcttggtctagctctcaacttctctgtcttctactatgagattatgaattctcccgagagggcttgtcatttggctaaacaagcttttgatgaggcaattgcagagttggacaccctgagtgaggagtcatacaaggacagcacccttatcatgcaactgttgagagacaacctcactctctggacctctgatttgcctgaagatggaggtatagtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

330

Amino Acids

37.06

Weight (kDa)

5.76

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26480
fragaria_vesca FvH4_4g30210
malus_domestica MD13G1063600.v1.1 MD16G1062100.v1.1
prunus_persica Prupe.1G285800_v2.0.a1
pyrus_communis pycom13g05620
rosa_chinensis RchiOBHm_Chr4g0438531
rosa_laevigata RLG00000006354
rosa_multiflora Rmu_sc0002327.1_g000007
rosa_roxburghii Rroxscaffold_5G00379530
rosa_rugosa Rorug04G0311100
rosa_samantha Rh4DG367600
rosa_wichuraiana Rw0G006620 Rw0G016570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 654
AccB1I GGYRCC 1 cut(s) 654
AccB7I CCANNNNNTGG 1 cut(s) 529
AccII CGCG 4 cut(s) 74, 94, 130, 194
AccIII TCCGGA 1 cut(s) 605
AciI CCGC 4 cut(s) 128, 176, 192, 520
AclWI GGATC 2 cut(s) 104, 331
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 820
AcuI CTGAAG 2 cut(s) 714, 993
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 2 cut(s) 312, 656
AfiI CCNNNNNNNGG 5 cut(s) 24, 526, 529, 895, 977
AgeI ACCGGT 2 cut(s) 151, 651
AgsI TTSAA 3 cut(s) 38, 87, 670
AjnI CCWGG 2 cut(s) 255, 678
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
AluBI AGCT 8 cut(s) 200, 274, 361, 373, 603, 698, 785, 857
AluI AGCT 8 cut(s) 200, 274, 361, 373, 603, 698, 785, 857
Alw21I GWGCWC 2 cut(s) 430, 495
Alw26I GTCTC 3 cut(s) 57, 245, 933
AlwI GGATC 2 cut(s) 104, 331
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 2 cut(s) 236, 827
Aor13HI TCCGGA 1 cut(s) 605
AoxI GGCC 4 cut(s) 41, 267, 285, 612
ApeKI GCWGC 2 cut(s) 695, 725
ApoI RAATTY 1 cut(s) 820
ArsI GACNNNNNNTTYG 4 cut(s) 88, 120, 949, 981
AsiGI ACCGGT 2 cut(s) 151, 651
Asp718I GGTACC 1 cut(s) 654
AspLEI GCGC 4 cut(s) 74, 76, 196, 447
AspS9I GGNCC 2 cut(s) 104, 957
AsuHPI GGTGA 3 cut(s) 115, 150, 653
AsuNHI GCTAGC 1 cut(s) 196
AvaI CYCGRG 2 cut(s) 236, 827
AvaII GGWCC 2 cut(s) 104, 957
BalI TGGCCA 1 cut(s) 269
BanI GGYRCC 1 cut(s) 654
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 3 cut(s) 164, 447, 793
Bbv12I GWGCWC 2 cut(s) 430, 495
BbvI GCAGC 2 cut(s) 707, 712
BccI CCATC 2 cut(s) 763, 971
BciT130I CCWGG 2 cut(s) 257, 680
BciVI GTATCC 1 cut(s) 401
BclI TGATCA 2 cut(s) 202, 507
BcoDI GTCTC 3 cut(s) 57, 245, 933
BfaI CTAG 2 cut(s) 197, 782
BfuI GTATCC 1 cut(s) 401
BglI GCCNNNNNGGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 748
BisI GCNGC 2 cut(s) 696, 726
BlsI GCNGC 2 cut(s) 697, 727
Bme1390I CCNGG 2 cut(s) 257, 680
Bme18I GGWCC 2 cut(s) 104, 957
BmeT110I CYCGRG 2 cut(s) 236, 827
BmgT120I GGNCC 2 cut(s) 104, 957
BmiI GGNNCC 1 cut(s) 656
BmrFI CCNGG 2 cut(s) 257, 680
BmsI GCATC 1 cut(s) 456
BmtI GCTAGC 1 cut(s) 200
BpiI GAAGAC 3 cut(s) 164, 447, 793
BplI GAGNNNNNCTC 4 cut(s) 527, 559, 930, 962
BpuEI CTTGAG 2 cut(s) 389, 695
BsaBI GATNNNNATC 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 255
BsaWI WCCGGW 4 cut(s) 112, 151, 605, 651
BsaXI ACNNNNNCTCC 1 cut(s) 972
Bsc4I CCNNNNNNNGG 5 cut(s) 24, 526, 529, 895, 977
Bse118I RCCGGY 2 cut(s) 151, 651
Bse1I ACTGG 1 cut(s) 703
Bse8I GATNNNNATC 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 605
BseBI CCWGG 2 cut(s) 257, 680
BseDI CCNNGG 1 cut(s) 255
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 24, 526, 529, 895, 977
BseMII CTCAG 2 cut(s) 654, 881
BseNI ACTGG 1 cut(s) 703
BsePI GCGCGC 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 548, 911
BseXI GCAGC 2 cut(s) 707, 712
Bsh1236I CGCG 4 cut(s) 74, 94, 130, 194
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 4 cut(s) 43, 269, 287, 614
BshNI GGYRCC 1 cut(s) 654
BshTI ACCGGT 2 cut(s) 151, 651
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 430, 495
BsiHKCI CYCGRG 2 cut(s) 236, 827
BsiSI CCGG 4 cut(s) 113, 152, 606, 652
BslI CCNNNNNNNGG 5 cut(s) 24, 526, 529, 895, 977
BsmAI GTCTC 3 cut(s) 57, 245, 933
BsnI GGCC 4 cut(s) 43, 269, 287, 614
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 2 cut(s) 236, 827
Bsp1286I GDGCHC 2 cut(s) 430, 495
Bsp13I TCCGGA 1 cut(s) 605
Bsp143I GATC 7 cut(s) 109, 166, 202, 323, 364, 507, 748
BspACI CCGC 4 cut(s) 128, 176, 192, 520
BspANI GGCC 4 cut(s) 43, 269, 287, 614
BspCNI CTCAG 2 cut(s) 655, 882
BspEI TCCGGA 1 cut(s) 605
BspFNI CGCG 4 cut(s) 74, 94, 130, 194
BspLI GGNNCC 1 cut(s) 656
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 2 cut(s) 104, 331
BspT107I GGYRCC 1 cut(s) 654
BspTNI GGTCTC 1 cut(s) 245
BsrFI RCCGGY 2 cut(s) 151, 651
BsrI ACTGG 1 cut(s) 703
BssAI RCCGGY 2 cut(s) 151, 651
BssECI CCNNGG 1 cut(s) 255
BssHII GCGCGC 1 cut(s) 72
BssMI GATC 7 cut(s) 109, 166, 202, 323, 364, 507, 748
BssNI GRCGYC 1 cut(s) 437
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 257, 680
Bst4CI ACNGT 5 cut(s) 104, 310, 379, 619, 933
Bst6I CTCTTC 3 cut(s) 378, 468, 601
BstACI GRCGYC 1 cut(s) 437
BstC8I GCNNGC 4 cut(s) 74, 198, 276, 285
BstDEI CTNAG 2 cut(s) 663, 890
BstENI CCTNNNNNAGG 1 cut(s) 893
BstFNI CGCG 4 cut(s) 74, 94, 130, 194
BstHHI GCGC 4 cut(s) 74, 76, 196, 447
BstKTI GATC 7 cut(s) 112, 169, 205, 326, 367, 510, 751
BstMAI GTCTC 3 cut(s) 57, 245, 933
BstMBI GATC 7 cut(s) 109, 166, 202, 323, 364, 507, 748
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 7 cut(s) 275, 280, 284, 289, 434, 731, 854
BstNI CCWGG 2 cut(s) 257, 680
BstSCI CCNGG 2 cut(s) 255, 678
BstUI CGCG 4 cut(s) 74, 94, 130, 194
BstV1I GCAGC 2 cut(s) 707, 712
BstV2I GAAGAC 3 cut(s) 164, 447, 793
BstX2I RGATCY 3 cut(s) 109, 323, 748
BstYI RGATCY 3 cut(s) 109, 323, 748
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 4 cut(s) 43, 269, 287, 614
BtsI GCAGTG 2 cut(s) 562, 735
BtsIMutI CAGTG 3 cut(s) 562, 615, 735
Cac8I GCNNGC 4 cut(s) 74, 198, 276, 285
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 4 cut(s) 74, 76, 196, 447
Cfr10I RCCGGY 2 cut(s) 151, 651
Cfr13I GGNCC 2 cut(s) 104, 957
CseI GACGC 1 cut(s) 426
Csp6I GTAC 2 cut(s) 311, 655
CspAI ACCGGT 2 cut(s) 151, 651
CviAII CATG 3 cut(s) 265, 451, 925
CviQI GTAC 2 cut(s) 311, 655
DdeI CTNAG 2 cut(s) 663, 890
DpnI GATC 7 cut(s) 111, 168, 204, 325, 366, 509, 750
DpnII GATC 7 cut(s) 109, 166, 202, 323, 364, 507, 748
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 3 cut(s) 378, 468, 601
EarI CTCTTC 3 cut(s) 378, 468, 601
EciI GGCGGA 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 104, 957
Eco57I CTGAAG 2 cut(s) 714, 993
Eco88I CYCGRG 2 cut(s) 236, 827
EcoNI CCTNNNNNAGG 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 820
EcoRII CCWGG 2 cut(s) 255, 678
FaeI CATG 3 cut(s) 268, 454, 928
FalI AAGNNNNNCTT 2 cut(s) 424, 456
FatI CATG 3 cut(s) 264, 450, 924
FauI CCCGC 1 cut(s) 135
FbaI TGATCA 2 cut(s) 202, 507
Fnu4HI GCNGC 2 cut(s) 696, 726
Fsp4HI GCNGC 2 cut(s) 696, 726
FspBI CTAG 2 cut(s) 197, 782
GlaI GCGC 4 cut(s) 73, 75, 195, 446
GluI GCNGC 2 cut(s) 696, 726
HaeIII GGCC 4 cut(s) 43, 269, 287, 614
HapII CCGG 4 cut(s) 113, 152, 606, 652
HgaI GACGC 1 cut(s) 426
HhaI GCGC 4 cut(s) 74, 76, 196, 447
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 3 cut(s) 268, 454, 928
Hin6I GCGC 4 cut(s) 72, 74, 194, 445
HinP1I GCGC 4 cut(s) 72, 74, 194, 445
HindIII AAGCTT 2 cut(s) 359, 855
HinfI GANTC 5 cut(s) 60, 391, 476, 589, 899
HpaII CCGG 4 cut(s) 113, 152, 606, 652
HphI GGTGA 3 cut(s) 115, 150, 653
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 19, 323, 964
Hpy188III TCNNGA 7 cut(s) 107, 368, 511, 606, 670, 827, 955
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 6 cut(s) 18, 189, 235, 293, 426, 520
HpyCH4III ACNGT 5 cut(s) 104, 310, 379, 619, 933
HpyCH4V TGCA 5 cut(s) 305, 555, 740, 875, 928
HpyF10VI GCNNNNNNNGC 7 cut(s) 275, 280, 284, 289, 434, 731, 854
HpyF3I CTNAG 2 cut(s) 663, 890
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 3 cut(s) 268, 454, 928
HspAI GCGC 4 cut(s) 72, 74, 194, 445
Kpn2I TCCGGA 1 cut(s) 605
KpnI GGTACC 1 cut(s) 658
Ksp22I TGATCA 2 cut(s) 202, 507
Kzo9I GATC 7 cut(s) 109, 166, 202, 323, 364, 507, 748
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 2 cut(s) 707, 712
LweI GCATC 1 cut(s) 456
MaeI CTAG 2 cut(s) 197, 782
MaeIII GTNAC 6 cut(s) 61, 293, 515, 557, 641, 705
MalI GATC 7 cut(s) 111, 168, 204, 325, 366, 509, 750
MboI GATC 7 cut(s) 109, 166, 202, 323, 364, 507, 748
MboII GAAGA 8 cut(s) 164, 358, 395, 447, 485, 588, 793, 986
MfeI CAATTG 2 cut(s) 162, 870
MflI RGATCY 3 cut(s) 109, 323, 748
MhlI GDGCHC 2 cut(s) 430, 495
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 4 cut(s) 67, 162, 820, 870
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 3 cut(s) 69, 485, 908
MmeI TCCRAC 1 cut(s) 861
Mox20I TGGCCA 1 cut(s) 269
MroI TCCGGA 1 cut(s) 605
MscI TGGCCA 1 cut(s) 269
MseI TTAA 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 4 cut(s) 113, 152, 606, 652
MspR9I CCNGG 2 cut(s) 257, 680
MunI CAATTG 2 cut(s) 162, 870
MvaI CCWGG 2 cut(s) 257, 680
MvnI CGCG 4 cut(s) 74, 94, 130, 194
MwoI GCNNNNNNNGC 7 cut(s) 275, 280, 284, 289, 434, 731, 854
NdeII GATC 7 cut(s) 109, 166, 202, 323, 364, 507, 748
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 3 cut(s) 268, 454, 928
NlaIV GGNNCC 1 cut(s) 656
NmeAIII GCCGAG 2 cut(s) 304, 313
NmuCI GTSAC 4 cut(s) 61, 557, 641, 705
PauI GCGCGC 1 cut(s) 72
PceI AGGCCT 1 cut(s) 43
PfeI GAWTC 2 cut(s) 391, 589
PflMI CCANNNNNTGG 1 cut(s) 529
PinAI ACCGGT 2 cut(s) 151, 651
PkrI GCNGC 2 cut(s) 697, 727
PleI GAGTC 3 cut(s) 68, 484, 907
PpsI GAGTC 3 cut(s) 68, 484, 907
Psp6I CCWGG 2 cut(s) 255, 678
PspGI CCWGG 2 cut(s) 255, 678
PspN4I GGNNCC 1 cut(s) 656
PspPI GGNCC 2 cut(s) 104, 957
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 3 cut(s) 109, 323, 748
PteI GCGCGC 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 2 cut(s) 312, 656
RsaNI GTAC 2 cut(s) 311, 655
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 2 cut(s) 696, 726
Sau3AI GATC 7 cut(s) 109, 166, 202, 323, 364, 507, 748
Sau96I GGNCC 2 cut(s) 104, 957
SchI GAGTC 3 cut(s) 69, 485, 908
ScrFI CCNGG 2 cut(s) 257, 680
SduI GDGCHC 2 cut(s) 430, 495
SfaNI GCATC 1 cut(s) 456
SinI GGWCC 2 cut(s) 104, 957
SmlI CTYRAG 2 cut(s) 368, 710
SmoI CTYRAG 2 cut(s) 368, 710
Sse9I AATT 4 cut(s) 67, 162, 820, 870
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 4 cut(s) 128, 176, 192, 520
SspMI CTAG 2 cut(s) 197, 782
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 255, 678
TaaI ACNGT 5 cut(s) 104, 310, 379, 619, 933
TaqI TCGA 4 cut(s) 139, 336, 430, 758
TasI AATT 4 cut(s) 67, 162, 820, 870
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 2 cut(s) 391, 589
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 3 cut(s) 562, 622, 742
TseFI GTSAC 4 cut(s) 61, 557, 641, 705
TseI GCWGC 2 cut(s) 695, 725
Tsp45I GTSAC 4 cut(s) 61, 557, 641, 705
TspDTI ATGAA 3 cut(s) 359, 650, 833
TspGWI ACGGA 2 cut(s) 113, 761
TspRI CASTG 3 cut(s) 562, 622, 742
Van91I CCANNNNNTGG 1 cut(s) 529
VpaK11BI GGWCC 2 cut(s) 104, 957
XagI CCTNNNNNAGG 1 cut(s) 893
XapI RAATTY 1 cut(s) 820
XspI CTAG 2 cut(s) 197, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.