AT1G26780
MYB Family

organ boundary specification between lateral organs and the meristem

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010448
Physical Location & Seq
Forward (+)
9270952 .. 9272713
1762 bp
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UTR
Exon/CDS
Intron
AT1G26780.2

Sequence Viewer

Length: 843 bp
ATGTTTATAACGGAAAAACAAGTGTGGATGGATGAGATCGTCGCAAGAAGAGCTTCTTCTTCTTGGGACTTCCCTTTCAACGACATTAATATTCATCAGCATCATCATCGTCACTGCAACACAAGTCATGAGTTTGAAATCTTGAAGAGTCCTCTTGGAGATGTAGCGGTTCACGAAGAAGAGAGTAATAATAATAACCCTAATTTCAGTAACAGCGAGAGTGGTAAGAAGGAGACAACAGATAGTGGTCAGTCTTGGTCCTCGTCGTCTTCAAAACCATCGGTCTTGGGGAGAGGACATTGGAGACCAGCTGAAGATGTTAAACTCAAAGAGCTTGTCTCCATTTACGGCCCACAAAACTGGAACCTCATAGCTGAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGTAGACTACGATGGTTTAACCAATTGGACCCGAGGATAAACCGAAGAGCTTTCACAGAAGAAGAAGAGGAGAGGCTGATGCAAGCACATAGGCTTTATGGTAACAAATGGGCAATGATTGCGAGGCTTTTCCCTGGTAGAACTGATAATTCAGTGAAGAACCATTGGCATGTTGTCATGGCTCGTAAGTATAGAGAACACTCTTCTGCTTACCGTAGGAGAAAGCTTATGAGTAATAATCCACTTAAACCTCACCTCACCAATAATCATCATCCTAACCCTAACCCTAATTACCACTCTTTTATCTCCACTAATCATTACTTCGCTCAGCCTTTCCCCGAGTTTAATTTGACTCATCACCTGGTTAATAATGCCCCTATCACGAGTGACCATAACCAGCTTGTGTTGCCTTTCCATTGCTTTCAAGGTAGCCTATAG

Protein Analysis

280

Amino Acids

32.76

Weight (kDa)

9.26

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 98 - 144 1.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 101 - 161 6.6e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 150 - 192 5e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 153 - 199 2.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26780 AT1G26780
fragaria_vesca FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 FvH4_4g31190
malus_domestica MD13G1070400.v1.1 MD16G1071300.v1.1
prunus_persica Prupe.1G276300_v2.0.a1
pyrus_communis pycom13g06320 pycom16g06170
rosa_chinensis RchiOBHm_Chr4g0439571
rosa_laevigata RLG00000006257
rosa_multiflora Rmu_sc0002549.1_g000025
rosa_roxburghii Rroxscaffold_5G00380500
rosa_rugosa Rorug04G0319900
rosa_samantha Rh4AG370900 Rh4BG382700 Rh4CG397300 Rh4DG377500
rosa_wichuraiana Rw4G031620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AccI GTMKAC 1 cut(s) 409
AciI CCGC 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 333
AgsI TTSAA 6 cut(s) 79, 137, 145, 273, 386, 830
AjnI CCWGG 2 cut(s) 538, 765
AluBI AGCT 9 cut(s) 53, 311, 334, 374, 382, 405, 455, 631, 805
AluI AGCT 9 cut(s) 53, 311, 334, 374, 382, 405, 455, 631, 805
Alw26I GTCTC 3 cut(s) 227, 298, 343
Ama87I CYCGRG 2 cut(s) 436, 743
AoxI GGCC 1 cut(s) 349
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AseI ATTAAT 1 cut(s) 87
Asp700I GAANNNNTTC 2 cut(s) 52, 381
AspS9I GGNCC 3 cut(s) 258, 350, 433
AsuHPI GGTGA 3 cut(s) 650, 655, 755
AvaI CYCGRG 2 cut(s) 436, 743
AvaII GGWCC 2 cut(s) 258, 433
BauI CACGAG 1 cut(s) 787
BbsI GAAGAC 1 cut(s) 261
BccI CCATC 3 cut(s) 22, 286, 411
BceAI ACGGC 1 cut(s) 364
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciT130I CCWGG 2 cut(s) 540, 767
BcoDI GTCTC 3 cut(s) 227, 298, 343
BfmI CTRYAG 2 cut(s) 406, 839
BglII AGATCT 1 cut(s) 392
BlpI GCTNAGC 1 cut(s) 732
Bme1390I CCNGG 2 cut(s) 540, 767
Bme18I GGWCC 2 cut(s) 258, 433
BmeT110I CYCGRG 2 cut(s) 436, 743
BmgT120I GGNCC 3 cut(s) 258, 350, 433
BmiI GGNNCC 2 cut(s) 365, 435
BmrFI CCNGG 2 cut(s) 540, 767
BmsI GCATC 2 cut(s) 109, 474
BpiI GAAGAC 1 cut(s) 261
BplI GAGNNNNNCTC 2 cut(s) 323, 355
Bpu1102I GCTNAGC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 2 cut(s) 437, 538
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 2 cut(s) 525, 820
BseBI CCWGG 2 cut(s) 540, 767
BseDI CCNNGG 2 cut(s) 437, 538
BseGI GGATG 3 cut(s) 33, 37, 676
BseMI GCAATG 2 cut(s) 525, 820
BseMII CTCAG 1 cut(s) 746
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 488
BshFI GGCC 1 cut(s) 351
BsiHKCI CYCGRG 2 cut(s) 436, 743
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 3 cut(s) 227, 298, 343
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 351
Bso31I GGTCTC 1 cut(s) 298
BsoBI CYCGRG 2 cut(s) 436, 743
Bsp143I GATC 2 cut(s) 36, 392
Bsp1720I GCTNAGC 1 cut(s) 732
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 745
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 365, 435
BspQI GCTCTTC 3 cut(s) 43, 395, 445
BspTNI GGTCTC 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 525, 820
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 437, 538
BssMI GATC 2 cut(s) 36, 392
BssSI CACGAG 1 cut(s) 787
Bst2BI CACGAG 1 cut(s) 787
Bst2UI CCWGG 2 cut(s) 540, 767
Bst4CI ACNGT 1 cut(s) 620
Bst6I CTCTTC 7 cut(s) 43, 140, 174, 395, 445, 465, 613
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 732
BstF5I GGATG 3 cut(s) 33, 37, 676
BstKTI GATC 2 cut(s) 39, 395
BstMAI GTCTC 3 cut(s) 227, 298, 343
BstMBI GATC 2 cut(s) 36, 392
BstMWI GCNNNNNNNGC 3 cut(s) 50, 524, 811
BstNI CCWGG 2 cut(s) 540, 767
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 538, 765
BstSFI CTRYAG 2 cut(s) 406, 839
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 392
BstXI CCANNNNNNTGG 1 cut(s) 360
BstYI RGATCY 1 cut(s) 392
BsuRI GGCC 1 cut(s) 351
BtsCI GGATG 3 cut(s) 33, 37, 676
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 112, 564
Cac8I GCNNGC 1 cut(s) 489
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 258, 350, 433
CsiI ACCWGGT 1 cut(s) 765
CviAII CATG 3 cut(s) 128, 575, 583
DdeI CTNAG 1 cut(s) 732
DpnI GATC 2 cut(s) 38, 394
DpnII GATC 2 cut(s) 36, 392
Eam1104I CTCTTC 7 cut(s) 43, 140, 174, 395, 445, 465, 613
EarI CTCTTC 7 cut(s) 43, 140, 174, 395, 445, 465, 613
Eco31I GGTCTC 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 258, 433
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 2 cut(s) 436, 743
EcoRII CCWGG 2 cut(s) 538, 765
FaeI CATG 3 cut(s) 131, 578, 586
FalI AAGNNNNNCTT 4 cut(s) 37, 69, 40, 72
FaqI GGGAC 1 cut(s) 80
FatI CATG 3 cut(s) 127, 574, 582
FblI GTMKAC 1 cut(s) 409
FokI GGATG 3 cut(s) 40, 44, 663
HaeIII GGCC 1 cut(s) 351
Hin1II CATG 3 cut(s) 131, 578, 586
HindIII AAGCTT 2 cut(s) 380, 629
HinfI GANTC 2 cut(s) 148, 757
HphI GGTGA 3 cut(s) 650, 655, 755
Hpy166II GTNNAC 2 cut(s) 172, 410
Hpy188III TCNNGA 4 cut(s) 128, 142, 173, 787
Hpy8I GTNNAC 2 cut(s) 172, 410
Hpy99I CGWCG 2 cut(s) 44, 268
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4V TGCA 2 cut(s) 117, 487
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 524, 811
HpyF3I CTNAG 1 cut(s) 732
Hsp92II CATG 3 cut(s) 131, 578, 586
Kzo9I GATC 2 cut(s) 36, 392
LguI GCTCTTC 3 cut(s) 43, 395, 445
LpnPI CCDG 8 cut(s) 321, 346, 381, 525, 552, 752, 779, 815
LweI GCATC 2 cut(s) 109, 474
MabI ACCWGGT 1 cut(s) 765
MaeIII GTNAC 4 cut(s) 110, 209, 506, 791
MalI GATC 2 cut(s) 38, 394
MboI GATC 2 cut(s) 36, 392
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 1 cut(s) 392
MluCI AATT 5 cut(s) 202, 428, 553, 694, 751
MlyI GAGTC 2 cut(s) 157, 751
MroXI GAANNNNTTC 2 cut(s) 52, 381
MseI TTAA 6 cut(s) 87, 321, 423, 651, 750, 771
MslI CAYNNNNRTG 1 cut(s) 573
MspA1I CMGCKG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 540, 767
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 2 cut(s) 540, 767
MwoI GCNNNNNNNGC 3 cut(s) 50, 524, 811
NdeII GATC 2 cut(s) 36, 392
NlaIII CATG 3 cut(s) 131, 578, 586
NlaIV GGNNCC 2 cut(s) 365, 435
NmuCI GTSAC 2 cut(s) 110, 791
NspI RCATGY 1 cut(s) 578
PagI TCATGA 1 cut(s) 127
PciSI GCTCTTC 3 cut(s) 43, 395, 445
PdmI GAANNNNTTC 2 cut(s) 52, 381
PleI GAGTC 2 cut(s) 156, 751
PpsI GAGTC 2 cut(s) 156, 751
PshBI ATTAAT 1 cut(s) 87
PsiI TTATAA 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 538, 765
PspGI CCWGG 2 cut(s) 538, 765
PspN4I GGNNCC 2 cut(s) 365, 435
PspPI GGNCC 3 cut(s) 258, 350, 433
PsuI RGATCY 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 573
SapI GCTCTTC 3 cut(s) 43, 395, 445
SaqAI TTAA 6 cut(s) 87, 321, 423, 651, 750, 771
Sau3AI GATC 2 cut(s) 36, 392
Sau96I GGNCC 3 cut(s) 258, 350, 433
SchI GAGTC 2 cut(s) 157, 751
ScrFI CCNGG 2 cut(s) 540, 767
SexAI ACCWGGT 1 cut(s) 765
SfaNI GCATC 2 cut(s) 109, 474
SfcI CTRYAG 2 cut(s) 406, 839
SinI GGWCC 2 cut(s) 258, 433
SmiMI CAYNNNNRTG 1 cut(s) 573
Sse9I AATT 5 cut(s) 202, 428, 553, 694, 751
SsiI CCGC 1 cut(s) 167
SspI AATATT 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 538, 765
TaaI ACNGT 1 cut(s) 620
TaqII GACCGA 1 cut(s) 271
TasI AATT 5 cut(s) 202, 428, 553, 694, 751
Tru1I TTAA 6 cut(s) 87, 321, 423, 651, 750, 771
Tru9I TTAA 6 cut(s) 87, 321, 423, 651, 750, 771
TscAI CASTG 2 cut(s) 119, 564
TseFI GTSAC 2 cut(s) 110, 791
Tsp45I GTSAC 2 cut(s) 110, 791
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 2 cut(s) 119, 564
VpaK11BI GGWCC 2 cut(s) 258, 433
VspI ATTAAT 1 cut(s) 87
XceI RCATGY 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 409
XmnI GAANNNNTTC 2 cut(s) 52, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.