MD13G1070400.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
4951664 .. 4954346
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1070400.v1.1.491

Sequence Viewer

Length: 1359 bp
ATGATGGCCAACAATGGTGCTATATATGCAACAGAAACCCCTAATACCTTAAGCTGTTTCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAATGGGAATGGTTTATGCCGATATGGGCTCTCTTTCTCTGAGCTCCAAGTTTGGAGTATACTCATCAGTTTCTTCGCAGGACAGCAGCTACATCTCTAAGATTTCTGAACCAGAAAATGGAAGGGCATTCTGGGGTTTTCCTTCTACCAGAAGTTATGAGGATCACCACAACAGCAGTGACATGAAGGGCTCAGATTATATCAGCAGTGATCATGATAAGAATCCTAACGAGAGTGGGGGGAAAGTTAGTGAGAAGGAAACAGAAAGTGGGCAATCAAAACTGTGTGCCAGAGGGCATTGGAGGCCTGCTGAGGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGCCCTCAGAACTGGAACCTTATTGCAGAGAAGCTGGAAGGAAGATCAGGTAAGAGCTGCAGATTAAGATGGTTTAACCAGCTGGACCCAAGAATCAACAGAAGAGCTTTTACTGAGGAGGAAGAAGAAAGACTAATGCAAGCTCATAGAATATATGGCAACAAGTGGGCCATGATAGCCAGGCTCTTTCCTGGAAGAACTGATAATGCTGTGAAGAACCATTGGCATGTTATCATGGCCAGGAAGTACAGAGAGCAATCCAGTGCTTATCGGAGGAGGAAGCTAAACCAAACTGTTTACAGAAGCATGGAGGAAAATCCAAGCTTCAATGCAGCCTCGAGGAGTACTGAACCTCCGCCACCTTATAATGGTCTCAGTCTCCCCAATGGCGGCCTCGGCGGCAGTGGTTCTATATCTTCTTTTTCATATGGAACAAGCTATGATGGTGTTGTTGGTTATGGGGCTGATTATTATGGCTCAAATGGTTCACAAAACTTGATTAGTGTGGAAGAAGAAGCAATCGCAAGAAAAAAGTTGCTTTCTTATAATAATAGTGGATTTTGTTCACAACAAACTCCTGAATTCTTCCGTGGTCGGAAGAGCAATGAGGTGATGGGGATGATGAGCCAGAACCAATGTTGGGATGGTTCAGGTGAGATGGAGGGTCATTCATATGGGGGTATGTATACCCACCATCCACCTCCAAACATGAATGTGATGACAATGCAACAGTCAAACTTCCACAGCCTTGTTCATCAAAAGTACTCAGATTCTTCATGTCAATTTTCAGGCGGCAAGCCCTCACCATCAGCATCAGCTGCTGACAGAGTTGTTGGCAGCGGCGGCGGCAGCAGCCGCCGTGAGACGAGCATTCAGCCACCGCCCTTCATTGATTTTCTTGGGGTAGGAGCCACATGA

Protein Analysis

453

Amino Acids

49.8

Weight (kDa)

8.1

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 129 - 175 7.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 132 - 192 3.4e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 181 - 223 5.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 184 - 232 1.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010448)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 807, 987
AbsI CCTCGAGG 1 cut(s) 778
AccB7I CCANNNNNTGG 1 cut(s) 212
AccI GTMKAC 2 cut(s) 153, 1127
AciI CCGC 9 cut(s) 797, 831, 840, 1233, 1281, 1284, 1287, 1297, 1322
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 2 cut(s) 6, 678
AcsI RAATTY 1 cut(s) 1022
AfaI GTAC 3 cut(s) 689, 787, 1205
AfiI CCNNNNNNNGG 4 cut(s) 212, 809, 830, 1081
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 96, 769
AjnI CCWGG 3 cut(s) 620, 631, 680
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 3 cut(s) 818, 824, 1298
AlwI GGATC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 1262
Ama87I CYCGRG 1 cut(s) 778
AoxI GGCC 6 cut(s) 6, 398, 442, 609, 678, 832
ApeKI GCWGC 7 cut(s) 180, 498, 773, 1259, 1278, 1290, 1293
ApoI RAATTY 1 cut(s) 1022
AspS9I GGNCC 3 cut(s) 443, 526, 609
AsuHPI GGTGA 4 cut(s) 251, 1063, 1106, 1236
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 1 cut(s) 526
BalI TGGCCA 2 cut(s) 8, 680
BanII GRGCYC 3 cut(s) 125, 140, 287
BarI GAAGNNNNNNTAC 2 cut(s) 535, 567
Bbv12I GWGCWC 1 cut(s) 140
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 7 cut(s) 192, 485, 785, 1246, 1290, 1302, 1305
BccI CCATC 7 cut(s) 504, 878, 1048, 1079, 1093, 1143, 1255
BceAI ACGGC 1 cut(s) 1284
BciT130I CCWGG 3 cut(s) 622, 633, 682
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 818, 824, 1298
BfmI CTRYAG 1 cut(s) 499
BfrI CTTAAG 1 cut(s) 49
BglI GCCNNNNNGGC 1 cut(s) 840
BmcAI AGTACT 2 cut(s) 787, 1205
Bme1390I CCNGG 3 cut(s) 622, 633, 682
Bme18I GGWCC 1 cut(s) 526
BmeT110I CYCGRG 1 cut(s) 778
BmgT120I GGNCC 3 cut(s) 443, 526, 609
BmiI GGNNCC 3 cut(s) 458, 528, 1351
BmrFI CCNGG 3 cut(s) 622, 633, 682
BmsI GCATC 1 cut(s) 1262
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 835, 1030
BsaXI ACNNNNNCTCC 2 cut(s) 778, 808
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 809, 830, 1081
Bse1I ACTGG 2 cut(s) 458, 702
Bse3DI GCAATG 1 cut(s) 1051
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 3 cut(s) 622, 633, 682
BseDI CCNNGG 2 cut(s) 835, 1030
BseGI GGATG 3 cut(s) 1065, 1090, 1135
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 4 cut(s) 212, 809, 830, 1081
BseMI GCAATG 1 cut(s) 1051
BseMII CTCAG 7 cut(s) 125, 300, 396, 461, 546, 829, 1221
BseNI ACTGG 2 cut(s) 458, 702
BseRI GAGGAG 5 cut(s) 52, 55, 572, 730, 796
BseXI GCAGC 7 cut(s) 192, 485, 785, 1246, 1290, 1302, 1305
BshFI GGCC 6 cut(s) 8, 400, 444, 611, 680, 834
BsiHKAI GWGCWC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 778
BslI CCNNNNNNNGG 4 cut(s) 212, 809, 830, 1081
BsmAI GTCTC 3 cut(s) 818, 824, 1298
BsmBI CGTCTC 1 cut(s) 1298
BsmI GAATGC 2 cut(s) 221, 1311
BsnI GGCC 6 cut(s) 8, 400, 444, 611, 680, 834
Bso31I GGTCTC 1 cut(s) 818
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 3 cut(s) 125, 140, 287
Bsp143I GATC 3 cut(s) 256, 304, 485
BspACI CCGC 9 cut(s) 797, 831, 840, 1233, 1281, 1284, 1287, 1297, 1322
BspANI GGCC 6 cut(s) 8, 400, 444, 611, 680, 834
BspCNI CTCAG 7 cut(s) 126, 299, 397, 460, 547, 828, 1220
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 458, 528, 1351
BspMAI CTGCAG 1 cut(s) 503
BspPI GGATC 1 cut(s) 264
BspQI GCTCTTC 2 cut(s) 538, 1034
BspTI CTTAAG 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 1051
BsrI ACTGG 2 cut(s) 458, 702
BssECI CCNNGG 2 cut(s) 835, 1030
BssMI GATC 3 cut(s) 256, 304, 485
BssNAI GTATAC 2 cut(s) 154, 1128
Bst1107I GTATAC 2 cut(s) 154, 1128
Bst2UI CCWGG 3 cut(s) 622, 633, 682
Bst4CI ACNGT 3 cut(s) 378, 736, 1173
Bst6I CTCTTC 3 cut(s) 73, 538, 1034
BstAFI CTTAAG 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 1259
BstC8I GCNNGC 3 cut(s) 402, 582, 1238
BstDEI CTNAG 8 cut(s) 134, 192, 286, 405, 447, 555, 815, 1207
BstDSI CCRYGG 1 cut(s) 1030
BstF5I GGATG 3 cut(s) 1065, 1090, 1135
BstKTI GATC 3 cut(s) 259, 307, 488
BstMAI GTCTC 3 cut(s) 818, 824, 1298
BstMBI GATC 3 cut(s) 256, 304, 485
BstNI CCWGG 3 cut(s) 622, 633, 682
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 3 cut(s) 620, 631, 680
BstSFI CTRYAG 1 cut(s) 499
BstV1I GCAGC 7 cut(s) 192, 485, 785, 1246, 1290, 1302, 1305
BstZ17I GTATAC 2 cut(s) 154, 1128
BsuRI GGCC 6 cut(s) 8, 400, 444, 611, 680, 834
BtgI CCRYGG 1 cut(s) 1030
BtsCI GGATG 3 cut(s) 1065, 1090, 1135
BtsI GCAGTG 3 cut(s) 277, 307, 850
BtsIMutI CAGTG 4 cut(s) 277, 307, 709, 850
Cac8I GCNNGC 3 cut(s) 402, 582, 1238
CaiI CAGNNNCTG 1 cut(s) 1262
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 443, 526, 609
Csp6I GTAC 3 cut(s) 688, 786, 1204
CviAII CATG 9 cut(s) 277, 308, 613, 668, 676, 748, 1150, 1218, 1356
CviQI GTAC 3 cut(s) 688, 786, 1204
DdeI CTNAG 8 cut(s) 134, 192, 286, 405, 447, 555, 815, 1207
DpnI GATC 3 cut(s) 258, 306, 487
DpnII GATC 3 cut(s) 256, 304, 485
EaeI YGGCCR 2 cut(s) 6, 678
Eam1104I CTCTTC 3 cut(s) 73, 538, 1034
EarI CTCTTC 3 cut(s) 73, 538, 1034
EciI GGCGGA 1 cut(s) 786
Ecl136II GAGCTC 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 400
Eco24I GRGCYC 3 cut(s) 125, 140, 287
Eco31I GGTCTC 1 cut(s) 818
Eco47I GGWCC 1 cut(s) 526
Eco53kI GAGCTC 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 778
EcoICRI GAGCTC 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 1022
EcoRII CCWGG 3 cut(s) 620, 631, 680
EcoT38I GRGCYC 3 cut(s) 125, 140, 287
Esp3I CGTCTC 1 cut(s) 1298
FaeI CATG 9 cut(s) 280, 311, 616, 671, 679, 751, 1153, 1221, 1359
FatI CATG 9 cut(s) 276, 307, 612, 667, 675, 747, 1149, 1217, 1355
FauNDI CATATG 2 cut(s) 868, 1114
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 2 cut(s) 153, 1127
FokI GGATG 3 cut(s) 1072, 1097, 1122
FriOI GRGCYC 3 cut(s) 125, 140, 287
HaeIII GGCC 6 cut(s) 8, 400, 444, 611, 680, 834
Hin1II CATG 9 cut(s) 280, 311, 616, 671, 679, 751, 1153, 1221, 1359
HindIII AAGCTT 1 cut(s) 763
HinfI GANTC 4 cut(s) 316, 410, 534, 1211
HphI GGTGA 4 cut(s) 251, 1063, 1106, 1236
Hpy166II GTNNAC 5 cut(s) 154, 739, 929, 1007, 1128
Hpy188I TCNGA 7 cut(s) 135, 202, 289, 450, 714, 1038, 1210
Hpy188III TCNNGA 2 cut(s) 308, 1019
Hpy8I GTNNAC 5 cut(s) 154, 739, 929, 1007, 1128
HpyAV CCTTC 6 cut(s) 210, 246, 274, 343, 473, 1336
HpyCH4III ACNGT 3 cut(s) 378, 736, 1173
HpyCH4V TGCA 6 cut(s) 29, 467, 501, 580, 773, 1168
HpyF3I CTNAG 8 cut(s) 134, 192, 286, 405, 447, 555, 815, 1207
Hsp92II CATG 9 cut(s) 280, 311, 616, 671, 679, 751, 1153, 1221, 1359
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 256, 304, 485
LguI GCTCTTC 2 cut(s) 538, 1034
LmnI GCTCC 2 cut(s) 143, 1349
Lsp1109I GCAGC 7 cut(s) 192, 485, 785, 1246, 1290, 1302, 1305
LweI GCATC 1 cut(s) 1262
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 258, 306, 487
MboI GATC 3 cut(s) 256, 304, 485
MhlI GDGCHC 3 cut(s) 125, 140, 287
MlsI TGGCCA 2 cut(s) 8, 680
MluCI AATT 2 cut(s) 1022, 1223
MluNI TGGCCA 2 cut(s) 8, 680
MmeI TCCRAC 1 cut(s) 1016
Mox20I TGGCCA 2 cut(s) 8, 680
MscI TGGCCA 2 cut(s) 8, 680
MseI TTAA 3 cut(s) 50, 506, 516
MslI CAYNNNNRTG 3 cut(s) 666, 1113, 1154
Msp20I TGGCCA 2 cut(s) 8, 680
MspA1I CMGCKG 3 cut(s) 523, 1259, 1281
MspCI CTTAAG 1 cut(s) 49
MspR9I CCNGG 3 cut(s) 622, 633, 682
Mva1269I GAATGC 2 cut(s) 221, 1311
MvaI CCWGG 3 cut(s) 622, 633, 682
NdeI CATATG 2 cut(s) 868, 1114
NdeII GATC 3 cut(s) 256, 304, 485
NlaIII CATG 9 cut(s) 280, 311, 616, 671, 679, 751, 1153, 1221, 1359
NlaIV GGNNCC 3 cut(s) 458, 528, 1351
NmeAIII GCCGAG 1 cut(s) 816
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 1 cut(s) 671
PaeR7I CTCGAG 1 cut(s) 778
PagI TCATGA 1 cut(s) 307
PceI AGGCCT 1 cut(s) 400
PciSI GCTCTTC 2 cut(s) 538, 1034
PctI GAATGC 2 cut(s) 221, 1311
PfeI GAWTC 4 cut(s) 316, 410, 534, 1211
PflMI CCANNNNNTGG 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 631
PsiI TTATAA 2 cut(s) 807, 987
Psp124BI GAGCTC 1 cut(s) 140
Psp6I CCWGG 3 cut(s) 620, 631, 680
PspGI CCWGG 3 cut(s) 620, 631, 680
PspN4I GGNNCC 3 cut(s) 458, 528, 1351
PspPI GGNCC 3 cut(s) 443, 526, 609
PspXI VCTCGAGB 1 cut(s) 778
PstI CTGCAG 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 1262
PvuII CAGCTG 2 cut(s) 523, 1259
RsaI GTAC 3 cut(s) 689, 787, 1205
RsaNI GTAC 3 cut(s) 688, 786, 1204
RseI CAYNNNNRTG 3 cut(s) 666, 1113, 1154
SacI GAGCTC 1 cut(s) 140
SapI GCTCTTC 2 cut(s) 538, 1034
SaqAI TTAA 3 cut(s) 50, 506, 516
Sau3AI GATC 3 cut(s) 256, 304, 485
Sau96I GGNCC 3 cut(s) 443, 526, 609
ScaI AGTACT 2 cut(s) 787, 1205
ScrFI CCNGG 3 cut(s) 622, 633, 682
SduI GDGCHC 3 cut(s) 125, 140, 287
SfaNI GCATC 1 cut(s) 1262
SfcI CTRYAG 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 778
SinI GGWCC 1 cut(s) 526
SlaI CTCGAG 1 cut(s) 778
SmiMI CAYNNNNRTG 3 cut(s) 666, 1113, 1154
SmlI CTYRAG 3 cut(s) 49, 419, 778
SmoI CTYRAG 3 cut(s) 49, 419, 778
Sse9I AATT 2 cut(s) 1022, 1223
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 9 cut(s) 797, 831, 840, 1233, 1281, 1284, 1287, 1297, 1322
SstI GAGCTC 1 cut(s) 140
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 3 cut(s) 620, 631, 680
TaaI ACNGT 3 cut(s) 378, 736, 1173
TaqI TCGA 1 cut(s) 779
TasI AATT 2 cut(s) 1022, 1223
TatI WGTACW 3 cut(s) 687, 785, 1203
TauI GCSGC 7 cut(s) 834, 843, 1236, 1284, 1287, 1290, 1299
TfiI GAWTC 4 cut(s) 316, 410, 534, 1211
Tru1I TTAA 3 cut(s) 50, 506, 516
Tru9I TTAA 3 cut(s) 50, 506, 516
TscAI CASTG 4 cut(s) 277, 307, 709, 850
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 7 cut(s) 180, 498, 773, 1259, 1278, 1290, 1293
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 7 cut(s) 293, 855, 1101, 1166, 1184, 1206, 1318
TspGWI ACGGA 1 cut(s) 1019
TspRI CASTG 4 cut(s) 277, 307, 709, 850
Van91I CCANNNNNTGG 1 cut(s) 212
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 526
XapI RAATTY 1 cut(s) 1022
XceI RCATGY 1 cut(s) 671
XcmI CCANNNNNNNNNTGG 1 cut(s) 1082
XhoI CTCGAG 1 cut(s) 778
XmiI GTMKAC 2 cut(s) 153, 1127
ZrmI AGTACT 2 cut(s) 787, 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.