transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26780 AT1G26780 |
| fragaria_vesca | FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 |
| malus_domestica | MD13G1070400.v1.1 MD16G1071300.v1.1 |
| prunus_persica | Prupe.1G276300_v2.0.a1 |
| pyrus_communis | pycom13g06320 pycom16g06170 |
| rosa_chinensis | RchiOBHm_Chr4g0439571 |
| rosa_laevigata | RLG00000006257 |
| rosa_multiflora | Rmu_sc0002549.1_g000025 |
| rosa_roxburghii | Rroxscaffold_5G00380500 |
| rosa_rugosa | Rorug04G0319900 |
| rosa_samantha | Rh4AG370900 Rh4BG382700 Rh4CG397300 Rh4DG377500 |
| rosa_wichuraiana | Rw4G031620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 797 |
| Acc36I | ACCTGC | 1 cut(s) | 1218 |
| Acc65I | GGTACC | 1 cut(s) | 1121 |
| AccB1I | GGYRCC | 1 cut(s) | 1121 |
| AccI | GTMKAC | 1 cut(s) | 625 |
| AciI | CCGC | 1 cut(s) | 1064 |
| AclWI | GGATC | 2 cut(s) | 665, 875 |
| AcoI | YGGCCR | 1 cut(s) | 801 |
| AcsI | RAATTY | 1 cut(s) | 1109 |
| AcuI | CTGAAG | 3 cut(s) | 73, 267, 699 |
| AfaI | GTAC | 4 cut(s) | 443, 812, 907, 1123 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 287, 947 |
| AgsI | TTSAA | 3 cut(s) | 141, 892, 1182 |
| AjiI | CACGTC | 1 cut(s) | 1310 |
| AjnI | CCWGG | 2 cut(s) | 754, 803 |
| Alw26I | GTCTC | 4 cut(s) | 901, 935, 959, 1382 |
| AlwI | GGATC | 2 cut(s) | 665, 875 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1346 |
| AoxI | GGCC | 4 cut(s) | 521, 565, 732, 801 |
| ApeKI | GCWGC | 7 cut(s) | 93, 363, 1343, 1346, 1349, 1352, 1377 |
| ApoI | RAATTY | 1 cut(s) | 1109 |
| Asp718I | GGTACC | 1 cut(s) | 1121 |
| AspS9I | GGNCC | 3 cut(s) | 566, 649, 732 |
| AsuC2I | CCSGG | 1 cut(s) | 1119 |
| AsuHPI | GGTGA | 8 cut(s) | 353, 472, 1038, 1153, 1165, 1211, 1296, 1326 |
| AsuII | TTCGAA | 1 cut(s) | 1107 |
| AvaII | GGWCC | 1 cut(s) | 649 |
| BalI | TGGCCA | 1 cut(s) | 803 |
| BanI | GGYRCC | 1 cut(s) | 1121 |
| BanII | GRGCYC | 2 cut(s) | 170, 356 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 658, 690 |
| BbvI | GCAGC | 7 cut(s) | 80, 375, 1330, 1333, 1336, 1339, 1389 |
| BccI | CCATC | 7 cut(s) | 627, 925, 1138, 1144, 1230, 1231, 1345 |
| BciT130I | CCWGG | 2 cut(s) | 756, 805 |
| BclI | TGATCA | 2 cut(s) | 370, 409 |
| BcnI | CCSGG | 1 cut(s) | 1119 |
| BcoDI | GTCTC | 4 cut(s) | 901, 935, 959, 1382 |
| BfaI | CTAG | 1 cut(s) | 744 |
| BfmI | CTRYAG | 3 cut(s) | 525, 622, 1353 |
| BfuAI | ACCTGC | 1 cut(s) | 1218 |
| BglII | AGATCT | 1 cut(s) | 1166 |
| BisI | GCNGC | 7 cut(s) | 94, 364, 1344, 1347, 1350, 1353, 1378 |
| BlsI | GCNGC | 7 cut(s) | 95, 365, 1345, 1348, 1351, 1354, 1379 |
| Bme1390I | CCNGG | 3 cut(s) | 756, 805, 1119 |
| Bme18I | GGWCC | 1 cut(s) | 649 |
| BmgBI | CACGTC | 1 cut(s) | 1310 |
| BmgT120I | GGNCC | 3 cut(s) | 566, 649, 732 |
| BmiI | GGNNCC | 4 cut(s) | 581, 651, 1123, 1429 |
| BmrFI | CCNGG | 3 cut(s) | 756, 805, 1119 |
| BmsI | GCATC | 2 cut(s) | 1222, 1310 |
| Bpu14I | TTCGAA | 1 cut(s) | 1107 |
| BpuEI | CTTGAG | 2 cut(s) | 527, 883 |
| BpuMI | CCSGG | 1 cut(s) | 1119 |
| BsaI | GGTCTC | 2 cut(s) | 959, 1382 |
| BsaJI | CCNNGG | 2 cut(s) | 653, 1117 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 898, 928, 958, 988 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 287, 947 |
| Bse1I | ACTGG | 3 cut(s) | 643, 825, 1059 |
| Bse3DI | GCAATG | 1 cut(s) | 1248 |
| BseBI | CCWGG | 2 cut(s) | 756, 805 |
| BseDI | CCNNGG | 2 cut(s) | 653, 1117 |
| BseGI | GGATG | 2 cut(s) | 1155, 1213 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 287, 947 |
| BseMI | GCAATG | 1 cut(s) | 1248 |
| BseMII | CTCAG | 7 cut(s) | 230, 303, 369, 584, 862, 970, 1296 |
| BseNI | ACTGG | 3 cut(s) | 643, 825, 1059 |
| BseRI | GAGGAG | 2 cut(s) | 91, 853 |
| BseXI | GCAGC | 7 cut(s) | 80, 375, 1330, 1333, 1336, 1339, 1389 |
| BshFI | GGCC | 4 cut(s) | 523, 567, 734, 803 |
| BshNI | GGYRCC | 1 cut(s) | 1121 |
| BsiSI | CCGG | 1 cut(s) | 1119 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 287, 947 |
| BsmAI | GTCTC | 4 cut(s) | 901, 935, 959, 1382 |
| BsnI | GGCC | 4 cut(s) | 523, 567, 734, 803 |
| Bso31I | GGTCTC | 2 cut(s) | 959, 1382 |
| Bsp119I | TTCGAA | 1 cut(s) | 1107 |
| Bsp1286I | GDGCHC | 2 cut(s) | 170, 356 |
| Bsp143I | GATC | 6 cut(s) | 370, 409, 608, 657, 880, 1166 |
| BspACI | CCGC | 1 cut(s) | 1064 |
| BspANI | GGCC | 4 cut(s) | 523, 567, 734, 803 |
| BspCNI | CTCAG | 7 cut(s) | 229, 304, 368, 583, 861, 969, 1295 |
| BspHI | TCATGA | 1 cut(s) | 373 |
| BspLI | GGNNCC | 4 cut(s) | 581, 651, 1123, 1429 |
| BspMAI | CTGCAG | 2 cut(s) | 529, 1357 |
| BspMI | ACCTGC | 1 cut(s) | 1218 |
| BspPI | GGATC | 2 cut(s) | 665, 875 |
| BspQI | GCTCTTC | 1 cut(s) | 661 |
| BspT104I | TTCGAA | 1 cut(s) | 1107 |
| BspT107I | GGYRCC | 1 cut(s) | 1121 |
| BspTNI | GGTCTC | 2 cut(s) | 959, 1382 |
| BsrDI | GCAATG | 1 cut(s) | 1248 |
| BsrI | ACTGG | 3 cut(s) | 643, 825, 1059 |
| BssECI | CCNNGG | 2 cut(s) | 653, 1117 |
| BssMI | GATC | 6 cut(s) | 370, 409, 608, 657, 880, 1166 |
| BssT1I | CCWWGG | 1 cut(s) | 653 |
| Bst2UI | CCWGG | 2 cut(s) | 756, 805 |
| Bst4CI | ACNGT | 3 cut(s) | 347, 859, 1277 |
| Bst6I | CTCTTC | 2 cut(s) | 127, 661 |
| BstBI | TTCGAA | 1 cut(s) | 1107 |
| BstC8I | GCNNGC | 3 cut(s) | 525, 705, 1324 |
| BstDEI | CTNAG | 9 cut(s) | 179, 216, 312, 355, 570, 629, 848, 956, 1282 |
| BstF5I | GGATG | 2 cut(s) | 1155, 1213 |
| BstKTI | GATC | 6 cut(s) | 373, 412, 611, 660, 883, 1169 |
| BstMAI | GTCTC | 4 cut(s) | 901, 935, 959, 1382 |
| BstMBI | GATC | 6 cut(s) | 370, 409, 608, 657, 880, 1166 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 360, 520, 740, 1041, 1349, 1352 |
| BstNI | CCWGG | 2 cut(s) | 756, 805 |
| BstNSI | RCATGY | 1 cut(s) | 794 |
| BstSCI | CCNGG | 3 cut(s) | 754, 803, 1117 |
| BstSFI | CTRYAG | 3 cut(s) | 525, 622, 1353 |
| BstV1I | GCAGC | 7 cut(s) | 80, 375, 1330, 1333, 1336, 1339, 1389 |
| BstX2I | RGATCY | 2 cut(s) | 880, 1166 |
| BstYI | RGATCY | 2 cut(s) | 880, 1166 |
| BsuRI | GGCC | 4 cut(s) | 523, 567, 734, 803 |
| BtrI | CACGTC | 1 cut(s) | 1310 |
| BtsCI | GGATG | 2 cut(s) | 1155, 1213 |
| BtsI | GCAGTG | 1 cut(s) | 373 |
| BtsIMutI | CAGTG | 4 cut(s) | 330, 373, 832, 1066 |
| BveI | ACCTGC | 1 cut(s) | 1218 |
| Cac8I | GCNNGC | 3 cut(s) | 525, 705, 1324 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1346 |
| CciI | TCATGA | 1 cut(s) | 373 |
| Cfr13I | GGNCC | 3 cut(s) | 566, 649, 732 |
| Csp6I | GTAC | 4 cut(s) | 442, 811, 906, 1122 |
| CviAII | CATG | 9 cut(s) | 43, 374, 434, 736, 791, 1054, 1234, 1385, 1434 |
| CviQI | GTAC | 4 cut(s) | 442, 811, 906, 1122 |
| DdeI | CTNAG | 9 cut(s) | 179, 216, 312, 355, 570, 629, 848, 956, 1282 |
| DpnI | GATC | 6 cut(s) | 372, 411, 610, 659, 882, 1168 |
| DpnII | GATC | 6 cut(s) | 370, 409, 608, 657, 880, 1166 |
| EaeI | YGGCCR | 1 cut(s) | 801 |
| Eam1104I | CTCTTC | 2 cut(s) | 127, 661 |
| EarI | CTCTTC | 2 cut(s) | 127, 661 |
| Eco130I | CCWWGG | 1 cut(s) | 653 |
| Eco147I | AGGCCT | 1 cut(s) | 523 |
| Eco24I | GRGCYC | 2 cut(s) | 170, 356 |
| Eco31I | GGTCTC | 2 cut(s) | 959, 1382 |
| Eco47I | GGWCC | 1 cut(s) | 649 |
| Eco57I | CTGAAG | 3 cut(s) | 73, 267, 699 |
| EcoRI | GAATTC | 1 cut(s) | 1109 |
| EcoRII | CCWGG | 2 cut(s) | 754, 803 |
| EcoT14I | CCWWGG | 1 cut(s) | 653 |
| EcoT38I | GRGCYC | 2 cut(s) | 170, 356 |
| ErhI | CCWWGG | 1 cut(s) | 653 |
| FaeI | CATG | 9 cut(s) | 46, 377, 437, 739, 794, 1057, 1237, 1388, 1437 |
| FatI | CATG | 9 cut(s) | 42, 373, 433, 735, 790, 1053, 1233, 1384, 1433 |
| FauNDI | CATATG | 1 cut(s) | 985 |
| FbaI | TGATCA | 2 cut(s) | 370, 409 |
| FblI | GTMKAC | 1 cut(s) | 625 |
| Fnu4HI | GCNGC | 7 cut(s) | 94, 364, 1344, 1347, 1350, 1353, 1378 |
| FokI | GGATG | 2 cut(s) | 1162, 1200 |
| FriOI | GRGCYC | 2 cut(s) | 170, 356 |
| Fsp4HI | GCNGC | 7 cut(s) | 94, 364, 1344, 1347, 1350, 1353, 1378 |
| FspBI | CTAG | 1 cut(s) | 744 |
| GluI | GCNGC | 7 cut(s) | 94, 364, 1344, 1347, 1350, 1353, 1378 |
| HaeIII | GGCC | 4 cut(s) | 523, 567, 734, 803 |
| HapII | CCGG | 1 cut(s) | 1119 |
| Hin1II | CATG | 9 cut(s) | 46, 377, 437, 739, 794, 1057, 1237, 1388, 1437 |
| HincII | GTYRAC | 2 cut(s) | 6, 1024 |
| HindII | GTYRAC | 2 cut(s) | 6, 1024 |
| HindIII | AAGCTT | 2 cut(s) | 239, 886 |
| HinfI | GANTC | 2 cut(s) | 533, 1286 |
| HpaI | GTTAAC | 1 cut(s) | 6 |
| HpaII | CCGG | 1 cut(s) | 1119 |
| HphI | GGTGA | 8 cut(s) | 353, 472, 1038, 1153, 1165, 1211, 1296, 1326 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 626, 862, 1024 |
| Hpy188I | TCNGA | 7 cut(s) | 247, 313, 358, 396, 414, 573, 1285 |
| Hpy188III | TCNNGA | 3 cut(s) | 218, 374, 778 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 626, 862, 1024 |
| HpyAV | CCTTC | 7 cut(s) | 32, 97, 466, 596, 1109, 1277, 1403 |
| HpyCH4III | ACNGT | 3 cut(s) | 347, 859, 1277 |
| HpyCH4IV | ACGT | 1 cut(s) | 1309 |
| HpyCH4V | TGCA | 7 cut(s) | 158, 297, 527, 703, 1213, 1246, 1355 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 360, 520, 740, 1041, 1349, 1352 |
| HpyF3I | CTNAG | 9 cut(s) | 179, 216, 312, 355, 570, 629, 848, 956, 1282 |
| HpySE526I | ACGT | 1 cut(s) | 1309 |
| Hsp92II | CATG | 9 cut(s) | 46, 377, 437, 739, 794, 1057, 1237, 1388, 1437 |
| KpnI | GGTACC | 1 cut(s) | 1125 |
| Ksp22I | TGATCA | 2 cut(s) | 370, 409 |
| KspAI | GTTAAC | 1 cut(s) | 6 |
| Kzo9I | GATC | 6 cut(s) | 370, 409, 608, 657, 880, 1166 |
| LguI | GCTCTTC | 1 cut(s) | 661 |
| LmnI | GCTCC | 2 cut(s) | 112, 1427 |
| Lsp1109I | GCAGC | 7 cut(s) | 80, 375, 1330, 1333, 1336, 1339, 1389 |
| LweI | GCATC | 2 cut(s) | 1222, 1310 |
| MaeI | CTAG | 1 cut(s) | 744 |
| MaeII | ACGT | 1 cut(s) | 1309 |
| MaeIII | GTNAC | 5 cut(s) | 20, 67, 341, 1205, 1277 |
| MalI | GATC | 6 cut(s) | 372, 411, 610, 659, 882, 1168 |
| MboI | GATC | 6 cut(s) | 370, 409, 608, 657, 880, 1166 |
| MflI | RGATCY | 2 cut(s) | 880, 1166 |
| MhlI | GDGCHC | 2 cut(s) | 170, 356 |
| MlsI | TGGCCA | 1 cut(s) | 803 |
| MluCI | AATT | 2 cut(s) | 574, 1109 |
| MluNI | TGGCCA | 1 cut(s) | 803 |
| MmeI | TCCRAC | 3 cut(s) | 210, 579, 627 |
| Mox20I | TGGCCA | 1 cut(s) | 803 |
| MscI | TGGCCA | 1 cut(s) | 803 |
| MseI | TTAA | 2 cut(s) | 5, 639 |
| MslI | CAYNNNNRTG | 2 cut(s) | 378, 789 |
| Msp20I | TGGCCA | 1 cut(s) | 803 |
| MspA1I | CMGCKG | 2 cut(s) | 93, 1343 |
| MspI | CCGG | 1 cut(s) | 1119 |
| MspR9I | CCNGG | 3 cut(s) | 756, 805, 1119 |
| MvaI | CCWGG | 2 cut(s) | 756, 805 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 360, 520, 740, 1041, 1349, 1352 |
| NciI | CCSGG | 1 cut(s) | 1119 |
| NdeI | CATATG | 1 cut(s) | 985 |
| NdeII | GATC | 6 cut(s) | 370, 409, 608, 657, 880, 1166 |
| NlaIII | CATG | 9 cut(s) | 46, 377, 437, 739, 794, 1057, 1237, 1388, 1437 |
| NlaIV | GGNNCC | 4 cut(s) | 581, 651, 1123, 1429 |
| NmuCI | GTSAC | 2 cut(s) | 20, 341 |
| NspI | RCATGY | 1 cut(s) | 794 |
| NspV | TTCGAA | 1 cut(s) | 1107 |
| PagI | TCATGA | 1 cut(s) | 373 |
| PceI | AGGCCT | 1 cut(s) | 523 |
| PciSI | GCTCTTC | 1 cut(s) | 661 |
| PfeI | GAWTC | 2 cut(s) | 533, 1286 |
| PfoI | TCCNGGA | 1 cut(s) | 754 |
| PkrI | GCNGC | 7 cut(s) | 95, 365, 1345, 1348, 1351, 1354, 1379 |
| PsiI | TTATAA | 1 cut(s) | 797 |
| Psp6I | CCWGG | 2 cut(s) | 754, 803 |
| PspGI | CCWGG | 2 cut(s) | 754, 803 |
| PspN4I | GGNNCC | 4 cut(s) | 581, 651, 1123, 1429 |
| PspPI | GGNCC | 3 cut(s) | 566, 649, 732 |
| PstI | CTGCAG | 2 cut(s) | 529, 1357 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1346 |
| PsuI | RGATCY | 2 cut(s) | 880, 1166 |
| PvuII | CAGCTG | 2 cut(s) | 93, 1343 |
| RsaI | GTAC | 4 cut(s) | 443, 812, 907, 1123 |
| RsaNI | GTAC | 4 cut(s) | 442, 811, 906, 1122 |
| RseI | CAYNNNNRTG | 2 cut(s) | 378, 789 |
| SapI | GCTCTTC | 1 cut(s) | 661 |
| SaqAI | TTAA | 2 cut(s) | 5, 639 |
| SatI | GCNGC | 7 cut(s) | 94, 364, 1344, 1347, 1350, 1353, 1378 |
| Sau3AI | GATC | 6 cut(s) | 370, 409, 608, 657, 880, 1166 |
| Sau96I | GGNCC | 3 cut(s) | 566, 649, 732 |
| ScrFI | CCNGG | 3 cut(s) | 756, 805, 1119 |
| SduI | GDGCHC | 2 cut(s) | 170, 356 |
| SfaNI | GCATC | 2 cut(s) | 1222, 1310 |
| SfcI | CTRYAG | 3 cut(s) | 525, 622, 1353 |
| SfuI | TTCGAA | 1 cut(s) | 1107 |
| SinI | GGWCC | 1 cut(s) | 649 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 378, 789 |
| SmlI | CTYRAG | 2 cut(s) | 542, 898 |
| SmoI | CTYRAG | 2 cut(s) | 542, 898 |
| Sse9I | AATT | 2 cut(s) | 574, 1109 |
| SseBI | AGGCCT | 1 cut(s) | 523 |
| SsiI | CCGC | 1 cut(s) | 1064 |
| SspMI | CTAG | 1 cut(s) | 744 |
| StuI | AGGCCT | 1 cut(s) | 523 |
| StyD4I | CCNGG | 3 cut(s) | 754, 803, 1117 |
| StyI | CCWWGG | 1 cut(s) | 653 |
| TaaI | ACNGT | 3 cut(s) | 347, 859, 1277 |
| TaiI | ACGT | 1 cut(s) | 1312 |
| TaqI | TCGA | 1 cut(s) | 1107 |
| TasI | AATT | 2 cut(s) | 574, 1109 |
| TatI | WGTACW | 2 cut(s) | 810, 905 |
| TfiI | GAWTC | 2 cut(s) | 533, 1286 |
| Tru1I | TTAA | 2 cut(s) | 5, 639 |
| Tru9I | TTAA | 2 cut(s) | 5, 639 |
| TscAI | CASTG | 4 cut(s) | 337, 373, 832, 1066 |
| TseFI | GTSAC | 2 cut(s) | 20, 341 |
| TseI | GCWGC | 7 cut(s) | 93, 363, 1343, 1346, 1349, 1352, 1377 |
| Tsp45I | GTSAC | 2 cut(s) | 20, 341 |
| TspDTI | ATGAA | 5 cut(s) | 51, 192, 419, 1278, 1396 |
| TspRI | CASTG | 4 cut(s) | 337, 373, 832, 1066 |
| VpaK11BI | GGWCC | 1 cut(s) | 649 |
| XapI | RAATTY | 1 cut(s) | 1109 |
| XceI | RCATGY | 1 cut(s) | 794 |
| XmiI | GTMKAC | 1 cut(s) | 625 |
| XspI | CTAG | 1 cut(s) | 744 |