Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010448

Physical Location & Seq

Genomic Coordinates Forward (+)

49365597 .. 49368018

Gene Structure 2422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0319900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGGGCAGTAGCAGACAGTCAACATCCTTGGGCATTTGCATTTGGCATCCTAGGTAATCTAATTTCCTTCATGGTTTACTTAGCCCCAGTGCCAACGTTTTACCGGATTTACAGAAAGAGATCGACTGAGGGTTTCCAATCGGTGCCGTATCTGGTAGCACTGTTTAGTGCCACGCTTTGGCTCTACTATGCCATGCTGAAGCAAAATGCTGTGCTTCTGATCACAATCAACACCCTCGGAAGTGTAATAGAGACTCTGTACATCGCCATGTATATTGTTTATGCAACAAAGGCTTCAAGGAAATTCACTATCAAGTTACTAGGGTTTATGAACTTCGGACTCTTCTCCTTGATCCTTGTCGTTTTACACTATGCATTTCATAGTCAATACCGTGCCCCGGTTCTCGGATGGATCAACGTTGCCATTTCCGTTTGTGTTTTTGCAGCGCCCTTGAGTATTGTGGCGCAGGTGATCCGCACAAAAAGTGTTGAATTTATGCCATTCAGCTTATCATTCTTCCTTACTTTGAGTGCCGTGATGTGGTTTGCCTATGGACTGTTCCTCAAGGACATTTGCATAGCACTTCCAAACGTGTTAGGTTTTGTCTTGGGTCTCCTTCAGATGCTGCTCTACGCCATATACAGAAACCGCAAGCAGGTCATAGTTGATCCGGAGAAGAAGCTTCCGGCATCCGAGCATGTGAAAAACATAGTGATTCTGAGCACTATCGCAACATCCGAAGTTCATCCAGTGGATGCTAAGCCGTGCGATGGCAATGACGTCGAAGACGTGGACGGCAAAGATGAAAATAAGGATGTTGATGGTGATGAACATGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

281

Amino Acids

31.53

Weight (kDa)

7.7

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 98	1.6e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 219	1.5e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26780 AT1G26780
fragaria_vesca	FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 FvH4_4g31190
malus_domestica	MD13G1070400.v1.1 MD16G1071300.v1.1
prunus_persica	Prupe.1G276300_v2.0.a1
pyrus_communis	pycom13g06320 pycom16g06170
rosa_chinensis	RchiOBHm_Chr4g0439571
rosa_laevigata	RLG00000006257
rosa_multiflora	Rmu_sc0002549.1_g000025
rosa_roxburghii	Rroxscaffold_5G00380500
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370900 Rh4BG382700 Rh4CG397300 Rh4DG377500
rosa_wichuraiana	Rw4G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
AatII	GACGTC	1 cut(s)	786
Acc36I	ACCTGC	2 cut(s)	460, 649
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	2 cut(s)	478, 652
AclI	AACGTT	2 cut(s)	98, 420
AclWI	GGATC	4 cut(s)	349, 422, 469, 665
AcsI	RAATTY	2 cut(s)	305, 494
AcuI	CTGAAG	2 cut(s)	221, 605
AcyI	GRCGYC	1 cut(s)	783
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	2 cut(s)	300, 494
AjiI	CACGTC	1 cut(s)	793
AluBI	AGCT	2 cut(s)	510, 685
AluI	AGCT	2 cut(s)	510, 685
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	2 cut(s)	248, 620
AlwI	GGATC	4 cut(s)	349, 422, 469, 665
AlwNI	CAGNNNCTG	1 cut(s)	628
Aor13HI	TCCGGA	1 cut(s)	673
ApeKI	GCWGC	2 cut(s)	446, 628
ApoI	RAATTY	2 cut(s)	305, 494
AspA2I	CCTAGG	1 cut(s)	52
AspLEI	GCGC	2 cut(s)	451, 469
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	484, 839
AvrII	CCTAGG	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	458, 615
BccI	CCATC	3 cut(s)	405, 767, 818
BceAI	ACGGC	4 cut(s)	133, 521, 751, 814
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BclI	TGATCA	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	2 cut(s)	248, 620
BfaI	CTAG	2 cut(s)	53, 323
BfoI	RGCGCY	1 cut(s)	452
BfuAI	ACCTGC	2 cut(s)	460, 649
BisI	GCNGC	2 cut(s)	447, 629
BlnI	CCTAGG	1 cut(s)	52
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	2 cut(s)	448, 630
Bme1390I	CCNGG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	793
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	4 cut(s)	57, 615, 701, 748
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	795
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	2 cut(s)	475, 551
BpuMI	CCSGG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	4 cut(s)	29, 52, 238, 399
BsaWI	WCCGGW	2 cut(s)	105, 673
Bsc4I	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
Bse1I	ACTGG	2 cut(s)	89, 752
Bse3DI	GCAATG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	227
BseAI	TCCGGA	1 cut(s)	673
BseDI	CCNNGG	4 cut(s)	29, 52, 238, 399
BseGI	GGATG	8 cut(s)	25, 48, 416, 692, 737, 748, 763, 823
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	2 cut(s)	120, 713
BseNI	ACTGG	2 cut(s)	89, 752
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	458, 615
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	728
BsiSI	CCGG	4 cut(s)	106, 401, 674, 689
BslI	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
BsmAI	GTCTC	2 cut(s)	248, 620
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	400, 728
Bsp13I	TCCGGA	1 cut(s)	673
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	6 cut(s)	122, 222, 354, 414, 474, 670
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	2 cut(s)	478, 652
BspCNI	CTCAG	2 cut(s)	121, 714
BspEI	TCCGGA	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	2 cut(s)	460, 649
BspPI	GGATC	4 cut(s)	349, 422, 469, 665
BspT107I	GGYRCC	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	784
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	89, 752
BssECI	CCNNGG	4 cut(s)	29, 52, 238, 399
BssMI	GATC	6 cut(s)	122, 222, 354, 414, 474, 670
BssNI	GRCGYC	1 cut(s)	783
BssT1I	CCWWGG	2 cut(s)	29, 52
Bst4CI	ACNGT	4 cut(s)	20, 165, 395, 561
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	783
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	4 cut(s)	82, 129, 722, 762
BstF5I	GGATG	8 cut(s)	25, 48, 416, 692, 737, 748, 763, 823
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	2 cut(s)	451, 469
BstKTI	GATC	6 cut(s)	125, 225, 357, 417, 477, 673
BstMAI	GTCTC	2 cut(s)	248, 620
BstMBI	GATC	6 cut(s)	122, 222, 354, 414, 474, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	458, 615
BstV2I	GAAGAC	1 cut(s)	795
BtgZI	GCGATG	2 cut(s)	250, 786
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	8 cut(s)	25, 48, 416, 692, 737, 748, 763, 823
BtsIMutI	CAGTG	3 cut(s)	96, 161, 759
BveI	ACCTGC	2 cut(s)	460, 649
Cac8I	GCNNGC	1 cut(s)	656
CaiI	CAGNNNCTG	1 cut(s)	628
CfoI	GCGC	2 cut(s)	451, 469
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	5 cut(s)	73, 196, 271, 701, 836
CviJI	RGCY	6 cut(s)	86, 184, 296, 510, 685, 766
CviKI_1	RGCY	6 cut(s)	86, 184, 296, 510, 685, 766
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	4 cut(s)	82, 129, 722, 762
DpnI	GATC	6 cut(s)	124, 224, 356, 416, 476, 672
DpnII	GATC	6 cut(s)	122, 222, 354, 414, 474, 670
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	29, 52
Eco31I	GGTCTC	1 cut(s)	620
Eco57I	CTGAAG	2 cut(s)	221, 605
EcoT14I	CCWWGG	2 cut(s)	29, 52
EcoT22I	ATGCAT	1 cut(s)	379
ErhI	CCWWGG	2 cut(s)	29, 52
FaeI	CATG	5 cut(s)	76, 199, 274, 704, 839
FatI	CATG	5 cut(s)	72, 195, 270, 700, 835
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	447, 629
FokI	GGATG	8 cut(s)	12, 35, 423, 679, 724, 735, 770, 830
Fsp4HI	GCNGC	2 cut(s)	447, 629
FspBI	CTAG	2 cut(s)	53, 323
GlaI	GCGC	2 cut(s)	450, 468
GluI	GCNGC	2 cut(s)	447, 629
HaeII	RGCGCY	1 cut(s)	452
HapII	CCGG	4 cut(s)	106, 401, 674, 689
HhaI	GCGC	2 cut(s)	451, 469
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	5 cut(s)	76, 199, 274, 704, 839
Hin6I	GCGC	2 cut(s)	449, 467
HinP1I	GCGC	2 cut(s)	449, 467
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	3 cut(s)	256, 342, 718
HpaII	CCGG	4 cut(s)	106, 401, 674, 689
HphI	GGTGA	2 cut(s)	484, 839
Hpy166II	GTNNAC	3 cut(s)	23, 79, 796
Hpy188I	TCNGA	8 cut(s)	222, 242, 341, 410, 624, 697, 723, 742
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	3 cut(s)	23, 79, 796
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	2 cut(s)	79, 629
HpyCH4III	ACNGT	4 cut(s)	20, 165, 395, 561
HpyCH4IV	ACGT	5 cut(s)	98, 420, 594, 783, 792
HpyCH4V	TGCA	5 cut(s)	41, 287, 377, 446, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	82, 129, 722, 762
HpySE526I	ACGT	5 cut(s)	98, 420, 594, 783, 792
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	5 cut(s)	76, 199, 274, 704, 839
HspAI	GCGC	2 cut(s)	449, 467
Kpn2I	TCCGGA	1 cut(s)	673
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	6 cut(s)	122, 222, 354, 414, 474, 670
LpnPI	CCDG	9 cut(s)	102, 119, 140, 414, 455, 644, 687, 702, 765
Lsp1109I	GCAGC	2 cut(s)	458, 615
LweI	GCATC	4 cut(s)	57, 615, 701, 748
MaeI	CTAG	2 cut(s)	53, 323
MaeII	ACGT	5 cut(s)	98, 420, 594, 783, 792
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	6 cut(s)	124, 224, 356, 416, 476, 672
MboI	GATC	6 cut(s)	122, 222, 354, 414, 474, 670
MboII	GAAGA	4 cut(s)	337, 511, 691, 800
MhlI	GDGCHC	2 cut(s)	400, 728
MluCI	AATT	3 cut(s)	63, 305, 494
MlyI	GAGTC	2 cut(s)	250, 336
MnlI	CCTC	3 cut(s)	124, 248, 575
Mph1103I	ATGCAT	1 cut(s)	379
MroI	TCCGGA	1 cut(s)	673
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	4 cut(s)	106, 401, 674, 689
MspR9I	CCNGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	6 cut(s)	122, 222, 354, 414, 474, 670
NlaIII	CATG	5 cut(s)	76, 199, 274, 704, 839
NlaIV	GGNNCC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	704
PaqCI	CACCTGC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	738, 789
PfeI	GAWTC	1 cut(s)	718
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	448, 630
PleI	GAGTC	2 cut(s)	250, 336
PpsI	GAGTC	2 cut(s)	250, 336
Psp1406I	AACGTT	2 cut(s)	98, 420
PspN4I	GGNNCC	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	269
SatI	GCNGC	2 cut(s)	447, 629
Sau3AI	GATC	6 cut(s)	122, 222, 354, 414, 474, 670
SchI	GAGTC	2 cut(s)	250, 336
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	400, 728
SfaNI	GCATC	4 cut(s)	57, 615, 701, 748
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	454, 566
SmoI	CTYRAG	2 cut(s)	454, 566
Sse9I	AATT	3 cut(s)	63, 305, 494
SsiI	CCGC	2 cut(s)	478, 652
SspMI	CTAG	2 cut(s)	53, 323
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	29, 52
TaaI	ACNGT	4 cut(s)	20, 165, 395, 561
TaiI	ACGT	5 cut(s)	101, 423, 597, 786, 795
TaqI	TCGA	2 cut(s)	125, 786
TasI	AATT	3 cut(s)	63, 305, 494
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	718
TscAI	CASTG	3 cut(s)	96, 168, 759
TseI	GCWGC	2 cut(s)	446, 628
TspDTI	ATGAA	6 cut(s)	61, 347, 371, 737, 822, 846
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	3 cut(s)	96, 168, 759
Van91I	CCANNNNNTGG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	305, 494
XceI	RCATGY	1 cut(s)	704
XmaJI	CCTAGG	1 cut(s)	52
XspI	CTAG	2 cut(s)	53, 323
ZraI	GACGTC	1 cut(s)	784
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.