MD16G1071300.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
5011836 .. 5013640
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1071300.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGGCCAACAATGGTGCTATATATGCAACAGAAAACGCAAATGTCTTAAGCTGTTTCTCCTCCTCCTCCTCTTCTTCCCCTTCTTCAATGGGAATGGTTTATGCGGACATGGGCTCTCTTTCTCTGAGATCCAACTGTGGGGTATATTCATCAGTTTCTTCCCAGGACAACAGCTACATCTCTAAGCTTTCTGAACCAGAAAATGGGAGGGCTTTCTGGGGTTTTCCTTCTACCAGAAGTTATGAGGATCACCACAACAGCAGTGACATGAAGGGCTCAGAATATACCAGCAGTGATCATGATAAGAATCCTAATGAGAGTGGGGTGAGTGTTAGTGAGAGGGAAACAGAAAATGGGCGATCAAAACTGTGTGCCAGAGGGCATTGGAGGCCTGCTGAGGATTCCAAGCTCAAGGAGCTTGTGACTCTTTATGGCCCTCAGAACTGGAACCTTATTGCAGAGAAGCTGGAAGGAAGATCAGGTAAGAGCTGCAGATTAAGATGGTTTAACCAGCTGGACCCAAGAATCAACAGAAGAGCTTTTACTGAGGAGGAAGAAGAAAAACTAATGCAAGCTCATAGAATATATGGCAACAAGTGGGCCATGATAGCCAGGCTCTTTCCTGGAAGAACTGATAATGCTTTGAAGAACCATTGGCATGTTATCATGGCCAGGAAGTACAGAAAGCAATCCAGTGCTTATCGGAGGAAGCTAAACCAAACTGTTTACAGAAGCGTGGACGAAAATCCAAGGGTCAATGCAGCCTCGAGGAGTACCGAACCTCCGCCACCTTACGTTGGTCTCAGTCTCCCCAATGGCGGCCTCAGCGGCGGTAGTTCTATATCGGATTTTTCATATGGAACAAGCTATTATGGTGGTGTTGGTTGTGGGGTTGGTTATTATGGCTCAAATGGTTCACAAAACTTGATTAGTTTGGGAGAAGAAGAAGCAATCACAAGGAAAAAATTGCTTTCTTATAATAATAGTGGATTTTGCTCACAACAACAACGAACTCCTTTTGAATTCTTCCCTGGTCGGAAGAGCAATGAGGTGATGGGGATGATGAGCCAGAGCAGATGTCGGGATGGTTCAGGTGAGGTGGAGGATCATTCATGCGGGGATATGTACACCCACCATCCACCACCATACATGAATATGATGGCAATGCAAGAGTCAAACTTCCACAGCCTTGTTCATCAAAGCTACTCATATTCTTCATGTCAAGTTTCCGGCGGCAAACCCTCACCATCCGCATCAGCATCTGACAGAGTTATTGGCAGCGGCGGCGGCCACCGTGAGACGAGCATTCCACCACCGCCATTCTTTGATTTTCTTGGGGTGGGAGGCAGATGA

Protein Analysis

451

Amino Acids

49.76

Weight (kDa)

8.45

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 126 - 172 3.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 129 - 189 6.3e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 178 - 220 1.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 181 - 226 1.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010448)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 978
AbsI CCTCGAGG 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 203
AclWI GGATC 3 cut(s) 123, 255, 1113
AcoI YGGCCR 3 cut(s) 3, 669, 1288
AcsI RAATTY 1 cut(s) 1022
AfaI GTAC 3 cut(s) 680, 775, 1127
AfiI CCNNNNNNNGG 4 cut(s) 138, 203, 797, 818
AflII CTTAAG 1 cut(s) 46
AgsI TTSAA 3 cut(s) 87, 646, 1022
AjnI CCWGG 5 cut(s) 162, 611, 622, 671, 1030
Alw26I GTCTC 3 cut(s) 806, 812, 1292
AlwI GGATC 3 cut(s) 123, 255, 1113
AlwNI CAGNNNCTG 1 cut(s) 1262
Ama87I CYCGRG 1 cut(s) 766
AoxI GGCC 7 cut(s) 3, 389, 433, 600, 669, 820, 1288
ApeKI GCWGC 3 cut(s) 489, 761, 1278
ApoI RAATTY 1 cut(s) 1022
AspS9I GGNCC 3 cut(s) 434, 517, 600
AsuHPI GGTGA 5 cut(s) 242, 337, 1063, 1106, 1236
AvaI CYCGRG 1 cut(s) 766
AvaII GGWCC 1 cut(s) 517
BalI TGGCCA 2 cut(s) 5, 671
BanII GRGCYC 2 cut(s) 116, 278
BarI GAAGNNNNNNTAC 2 cut(s) 526, 558
BbvCI CCTCAGC 2 cut(s) 396, 824
BbvI GCAGC 3 cut(s) 476, 773, 1290
BccI CCATC 6 cut(s) 495, 1048, 1079, 1143, 1153, 1255
BciT130I CCWGG 5 cut(s) 164, 613, 624, 673, 1032
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 3 cut(s) 806, 812, 1292
BfmI CTRYAG 1 cut(s) 490
BfrI CTTAAG 1 cut(s) 46
BglI GCCNNNNNGGC 1 cut(s) 828
BisI GCNGC 9 cut(s) 490, 762, 820, 829, 1234, 1279, 1282, 1285, 1288
BlsI GCNGC 9 cut(s) 491, 763, 821, 830, 1235, 1280, 1283, 1286, 1289
Bme1390I CCNGG 5 cut(s) 164, 613, 624, 673, 1032
Bme18I GGWCC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 766
BmgT120I GGNCC 3 cut(s) 434, 517, 600
BmiI GGNNCC 2 cut(s) 449, 519
BmrFI CCNGG 5 cut(s) 164, 613, 624, 673, 1032
BmsI GCATC 2 cut(s) 1262, 1268
Bpu10I CCTNAGC 2 cut(s) 396, 824
BpuEI CTTGAG 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 806
BsaJI CCNNGG 3 cut(s) 162, 749, 1030
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 203, 797, 818
Bse1I ACTGG 2 cut(s) 449, 693
Bse3DI GCAATG 2 cut(s) 1051, 1170
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 5 cut(s) 164, 613, 624, 673, 1032
BseDI CCNNGG 3 cut(s) 162, 749, 1030
BseGI GGATG 4 cut(s) 1065, 1090, 1135, 1247
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 4 cut(s) 138, 203, 797, 818
BseMI GCAATG 2 cut(s) 1051, 1170
BseMII CTCAG 7 cut(s) 116, 291, 387, 452, 537, 817, 838
BseNI ACTGG 2 cut(s) 449, 693
BseRI GAGGAG 6 cut(s) 49, 52, 55, 58, 563, 784
BseXI GCAGC 3 cut(s) 476, 773, 1290
BshFI GGCC 7 cut(s) 5, 391, 435, 602, 671, 822, 1290
BsiHKCI CYCGRG 1 cut(s) 766
BsiSI CCGG 1 cut(s) 1230
BslI CCNNNNNNNGG 4 cut(s) 138, 203, 797, 818
BsmAI GTCTC 3 cut(s) 806, 812, 1292
BsmBI CGTCTC 1 cut(s) 1292
BsmI GAATGC 1 cut(s) 1305
BsnI GGCC 7 cut(s) 5, 391, 435, 602, 671, 822, 1290
Bso31I GGTCTC 1 cut(s) 806
BsoBI CYCGRG 1 cut(s) 766
Bsp1286I GDGCHC 2 cut(s) 116, 278
Bsp1407I TGTACA 1 cut(s) 1125
Bsp143I GATC 6 cut(s) 128, 247, 295, 359, 476, 1105
BspANI GGCC 7 cut(s) 5, 391, 435, 602, 671, 822, 1290
BspCNI CTCAG 7 cut(s) 117, 290, 388, 451, 538, 816, 837
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 449, 519
BspMAI CTGCAG 1 cut(s) 494
BspPI GGATC 3 cut(s) 123, 255, 1113
BspQI GCTCTTC 2 cut(s) 529, 1034
BspTI CTTAAG 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 806
BsrDI GCAATG 2 cut(s) 1051, 1170
BsrGI TGTACA 1 cut(s) 1125
BsrI ACTGG 2 cut(s) 449, 693
BssECI CCNNGG 3 cut(s) 162, 749, 1030
BssMI GATC 6 cut(s) 128, 247, 295, 359, 476, 1105
BssT1I CCWWGG 1 cut(s) 749
Bst2UI CCWGG 5 cut(s) 164, 613, 624, 673, 1032
Bst4CI ACNGT 4 cut(s) 137, 369, 724, 1295
Bst6I CTCTTC 3 cut(s) 76, 529, 1034
BstAFI CTTAAG 1 cut(s) 46
BstAUI TGTACA 1 cut(s) 1125
BstC8I GCNNGC 2 cut(s) 393, 573
BstDEI CTNAG 8 cut(s) 125, 183, 277, 396, 438, 546, 803, 824
BstF5I GGATG 4 cut(s) 1065, 1090, 1135, 1247
BstKTI GATC 6 cut(s) 131, 250, 298, 362, 479, 1108
BstMAI GTCTC 3 cut(s) 806, 812, 1292
BstMBI GATC 6 cut(s) 128, 247, 295, 359, 476, 1105
BstMWI GCNNNNNNNGC 8 cut(s) 23, 388, 415, 608, 825, 828, 1284, 1287
BstNI CCWGG 5 cut(s) 164, 613, 624, 673, 1032
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 5 cut(s) 162, 611, 622, 671, 1030
BstSFI CTRYAG 1 cut(s) 490
BstV1I GCAGC 3 cut(s) 476, 773, 1290
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 7 cut(s) 5, 391, 435, 602, 671, 822, 1290
BtsCI GGATG 4 cut(s) 1065, 1090, 1135, 1247
BtsI GCAGTG 2 cut(s) 268, 298
BtsIMutI CAGTG 3 cut(s) 268, 298, 700
Cac8I GCNNGC 2 cut(s) 393, 573
CaiI CAGNNNCTG 1 cut(s) 1262
CciI TCATGA 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 434, 517, 600
Csp6I GTAC 3 cut(s) 679, 774, 1126
CviAII CATG 9 cut(s) 109, 268, 299, 604, 659, 667, 1113, 1150, 1218
CviQI GTAC 3 cut(s) 679, 774, 1126
DdeI CTNAG 8 cut(s) 125, 183, 277, 396, 438, 546, 803, 824
DpnI GATC 6 cut(s) 130, 249, 297, 361, 478, 1107
DpnII GATC 6 cut(s) 128, 247, 295, 359, 476, 1105
EaeI YGGCCR 3 cut(s) 3, 669, 1288
Eam1104I CTCTTC 3 cut(s) 76, 529, 1034
EarI CTCTTC 3 cut(s) 76, 529, 1034
EciI GGCGGA 1 cut(s) 774
Eco130I CCWWGG 1 cut(s) 749
Eco147I AGGCCT 1 cut(s) 391
Eco24I GRGCYC 2 cut(s) 116, 278
Eco31I GGTCTC 1 cut(s) 806
Eco47I GGWCC 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 766
EcoRI GAATTC 1 cut(s) 1022
EcoRII CCWGG 5 cut(s) 162, 611, 622, 671, 1030
EcoT14I CCWWGG 1 cut(s) 749
EcoT38I GRGCYC 2 cut(s) 116, 278
ErhI CCWWGG 1 cut(s) 749
Esp3I CGTCTC 1 cut(s) 1292
FaeI CATG 9 cut(s) 112, 271, 302, 607, 662, 670, 1116, 1153, 1221
FatI CATG 9 cut(s) 108, 267, 298, 603, 658, 666, 1112, 1149, 1217
FauI CCCGC 1 cut(s) 1109
FauNDI CATATG 1 cut(s) 856
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 9 cut(s) 490, 762, 820, 829, 1234, 1279, 1282, 1285, 1288
FokI GGATG 4 cut(s) 1072, 1097, 1122, 1234
FriOI GRGCYC 2 cut(s) 116, 278
Fsp4HI GCNGC 9 cut(s) 490, 762, 820, 829, 1234, 1279, 1282, 1285, 1288
GluI GCNGC 9 cut(s) 490, 762, 820, 829, 1234, 1279, 1282, 1285, 1288
HaeIII GGCC 7 cut(s) 5, 391, 435, 602, 671, 822, 1290
HapII CCGG 1 cut(s) 1230
Hin1II CATG 9 cut(s) 112, 271, 302, 607, 662, 670, 1116, 1153, 1221
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 5 cut(s) 307, 401, 424, 525, 1172
HpaII CCGG 1 cut(s) 1230
HphI GGTGA 5 cut(s) 242, 337, 1063, 1106, 1236
Hpy166II GTNNAC 4 cut(s) 727, 739, 917, 1128
Hpy188I TCNGA 8 cut(s) 126, 193, 280, 441, 705, 847, 1038, 1264
Hpy188III TCNNGA 2 cut(s) 299, 1082
Hpy8I GTNNAC 4 cut(s) 727, 739, 917, 1128
HpyAV CCTTC 4 cut(s) 90, 237, 265, 464
HpyCH4III ACNGT 4 cut(s) 137, 369, 724, 1295
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 6 cut(s) 26, 458, 492, 571, 761, 1168
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 388, 415, 608, 825, 828, 1284, 1287
HpyF3I CTNAG 8 cut(s) 125, 183, 277, 396, 438, 546, 803, 824
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 9 cut(s) 112, 271, 302, 607, 662, 670, 1116, 1153, 1221
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 6 cut(s) 128, 247, 295, 359, 476, 1105
LguI GCTCTTC 2 cut(s) 529, 1034
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 3 cut(s) 476, 773, 1290
LweI GCATC 2 cut(s) 1262, 1268
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 2 cut(s) 263, 421
MalI GATC 6 cut(s) 130, 249, 297, 361, 478, 1107
MboI GATC 6 cut(s) 128, 247, 295, 359, 476, 1105
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 116, 278
MlsI TGGCCA 2 cut(s) 5, 671
MluCI AATT 2 cut(s) 965, 1022
MluNI TGGCCA 2 cut(s) 5, 671
MlyI GAGTC 2 cut(s) 418, 1181
MmeI TCCRAC 2 cut(s) 156, 1016
Mox20I TGGCCA 2 cut(s) 5, 671
MscI TGGCCA 2 cut(s) 5, 671
MseI TTAA 3 cut(s) 47, 497, 507
MslI CAYNNNNRTG 2 cut(s) 657, 1154
Msp20I TGGCCA 2 cut(s) 5, 671
MspA1I CMGCKG 3 cut(s) 514, 828, 1281
MspCI CTTAAG 1 cut(s) 46
MspI CCGG 1 cut(s) 1230
MspR9I CCNGG 5 cut(s) 164, 613, 624, 673, 1032
Mva1269I GAATGC 1 cut(s) 1305
MvaI CCWGG 5 cut(s) 164, 613, 624, 673, 1032
MwoI GCNNNNNNNGC 8 cut(s) 23, 388, 415, 608, 825, 828, 1284, 1287
NdeI CATATG 1 cut(s) 856
NdeII GATC 6 cut(s) 128, 247, 295, 359, 476, 1105
NlaIII CATG 9 cut(s) 112, 271, 302, 607, 662, 670, 1116, 1153, 1221
NlaIV GGNNCC 2 cut(s) 449, 519
NmuCI GTSAC 2 cut(s) 263, 421
NspI RCATGY 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 766
PagI TCATGA 1 cut(s) 298
PceI AGGCCT 1 cut(s) 391
PciSI GCTCTTC 2 cut(s) 529, 1034
PctI GAATGC 1 cut(s) 1305
PfeI GAWTC 3 cut(s) 307, 401, 525
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 9 cut(s) 491, 763, 821, 830, 1235, 1280, 1283, 1286, 1289
PleI GAGTC 2 cut(s) 418, 1180
PpsI GAGTC 2 cut(s) 418, 1180
PsiI TTATAA 1 cut(s) 978
Psp6I CCWGG 5 cut(s) 162, 611, 622, 671, 1030
PspGI CCWGG 5 cut(s) 162, 611, 622, 671, 1030
PspN4I GGNNCC 2 cut(s) 449, 519
PspPI GGNCC 3 cut(s) 434, 517, 600
PspXI VCTCGAGB 1 cut(s) 766
PstI CTGCAG 1 cut(s) 494
PstNI CAGNNNCTG 1 cut(s) 1262
PsuI RGATCY 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 514
RsaI GTAC 3 cut(s) 680, 775, 1127
RsaNI GTAC 3 cut(s) 679, 774, 1126
RseI CAYNNNNRTG 2 cut(s) 657, 1154
SapI GCTCTTC 2 cut(s) 529, 1034
SaqAI TTAA 3 cut(s) 47, 497, 507
SatI GCNGC 9 cut(s) 490, 762, 820, 829, 1234, 1279, 1282, 1285, 1288
Sau3AI GATC 6 cut(s) 128, 247, 295, 359, 476, 1105
Sau96I GGNCC 3 cut(s) 434, 517, 600
SchI GAGTC 2 cut(s) 418, 1181
ScrFI CCNGG 5 cut(s) 164, 613, 624, 673, 1032
SduI GDGCHC 2 cut(s) 116, 278
SfaNI GCATC 2 cut(s) 1262, 1268
SfcI CTRYAG 1 cut(s) 490
Sfr274I CTCGAG 1 cut(s) 766
SinI GGWCC 1 cut(s) 517
SlaI CTCGAG 1 cut(s) 766
SmiMI CAYNNNNRTG 2 cut(s) 657, 1154
SmlI CTYRAG 3 cut(s) 46, 410, 766
SmoI CTYRAG 3 cut(s) 46, 410, 766
Sse9I AATT 2 cut(s) 965, 1022
SseBI AGGCCT 1 cut(s) 391
StuI AGGCCT 1 cut(s) 391
StyD4I CCNGG 5 cut(s) 162, 611, 622, 671, 1030
StyI CCWWGG 1 cut(s) 749
TaaI ACNGT 4 cut(s) 137, 369, 724, 1295
TaiI ACGT 1 cut(s) 798
TaqI TCGA 1 cut(s) 767
TasI AATT 2 cut(s) 965, 1022
TatI WGTACW 2 cut(s) 678, 1125
TauI GCSGC 6 cut(s) 822, 831, 1236, 1284, 1287, 1290
TfiI GAWTC 3 cut(s) 307, 401, 525
Tru1I TTAA 3 cut(s) 47, 497, 507
Tru9I TTAA 3 cut(s) 47, 497, 507
TscAI CASTG 3 cut(s) 268, 298, 700
TseFI GTSAC 2 cut(s) 263, 421
TseI GCWGC 3 cut(s) 489, 761, 1278
Tsp45I GTSAC 2 cut(s) 263, 421
TspDTI ATGAA 7 cut(s) 138, 284, 843, 1101, 1166, 1184, 1206
TspRI CASTG 3 cut(s) 268, 298, 700
Van91I CCANNNNNTGG 1 cut(s) 203
Vha464I CTTAAG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 1 cut(s) 1022
XceI RCATGY 1 cut(s) 662
XhoI CTCGAG 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.