transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26780 AT1G26780 |
| fragaria_vesca | FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 |
| malus_domestica | MD13G1070400.v1.1 MD16G1071300.v1.1 |
| prunus_persica | Prupe.1G276300_v2.0.a1 |
| pyrus_communis | pycom13g06320 pycom16g06170 |
| rosa_chinensis | RchiOBHm_Chr4g0439571 |
| rosa_laevigata | RLG00000006257 |
| rosa_multiflora | Rmu_sc0002549.1_g000025 |
| rosa_roxburghii | Rroxscaffold_5G00380500 |
| rosa_rugosa | Rorug04G0319900 |
| rosa_samantha | Rh4AG370900 Rh4BG382700 Rh4CG397300 Rh4DG377500 |
| rosa_wichuraiana | Rw4G031620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 725 |
| Acc36I | ACCTGC | 1 cut(s) | 965 |
| AccI | GTMKAC | 1 cut(s) | 553 |
| AccII | CGCG | 1 cut(s) | 336 |
| AciI | CCGC | 5 cut(s) | 272, 336, 342, 518, 1116 |
| AclWI | GGATC | 1 cut(s) | 593 |
| AcoI | YGGCCR | 5 cut(s) | 6, 310, 729, 891, 1110 |
| AcsI | RAATTY | 1 cut(s) | 820 |
| AcuI | CTGAAG | 1 cut(s) | 1049 |
| AfaI | GTAC | 3 cut(s) | 740, 840, 961 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 281, 517 |
| AgsI | TTSAA | 3 cut(s) | 111, 947, 1083 |
| AjnI | CCWGG | 5 cut(s) | 100, 434, 682, 731, 955 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1090, 1122 |
| Alw26I | GTCTC | 3 cut(s) | 160, 616, 1155 |
| AlwI | GGATC | 1 cut(s) | 593 |
| AoxI | GGCC | 8 cut(s) | 6, 310, 348, 449, 660, 729, 891, 1110 |
| ApeKI | GCWGC | 1 cut(s) | 908 |
| ApoI | RAATTY | 1 cut(s) | 820 |
| AspLEI | GCGC | 1 cut(s) | 296 |
| AspS9I | GGNCC | 4 cut(s) | 494, 577, 660, 931 |
| AsuHPI | GGTGA | 1 cut(s) | 90 |
| AvaII | GGWCC | 3 cut(s) | 494, 577, 931 |
| BalI | TGGCCA | 3 cut(s) | 8, 731, 893 |
| BanII | GRGCYC | 1 cut(s) | 140 |
| BauI | CACGAG | 1 cut(s) | 182 |
| BbvI | GCAGC | 1 cut(s) | 920 |
| BccI | CCATC | 5 cut(s) | 76, 112, 368, 555, 1024 |
| BceAI | ACGGC | 3 cut(s) | 259, 325, 664 |
| BciT130I | CCWGG | 5 cut(s) | 102, 436, 684, 733, 957 |
| BclI | TGATCA | 1 cut(s) | 1003 |
| BcoDI | GTCTC | 3 cut(s) | 160, 616, 1155 |
| BfaI | CTAG | 4 cut(s) | 21, 170, 672, 1103 |
| BfmI | CTRYAG | 2 cut(s) | 453, 550 |
| BfoI | RGCGCY | 1 cut(s) | 297 |
| BfuAI | ACCTGC | 1 cut(s) | 965 |
| BisI | GCNGC | 2 cut(s) | 909, 1117 |
| BlsI | GCNGC | 2 cut(s) | 910, 1118 |
| Bme1390I | CCNGG | 5 cut(s) | 102, 436, 684, 733, 957 |
| Bme18I | GGWCC | 3 cut(s) | 494, 577, 931 |
| BmgT120I | GGNCC | 4 cut(s) | 494, 577, 660, 931 |
| BmiI | GGNNCC | 6 cut(s) | 139, 286, 509, 579, 933, 1201 |
| BmrFI | CCNGG | 5 cut(s) | 102, 436, 684, 733, 957 |
| BmsI | GCATC | 1 cut(s) | 1100 |
| BpmI | CTGGAG | 2 cut(s) | 816, 1164 |
| BpuEI | CTTGAG | 2 cut(s) | 76, 455 |
| BsaJI | CCNNGG | 5 cut(s) | 297, 307, 435, 581, 682 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 281, 517 |
| Bse118I | RCCGGY | 1 cut(s) | 1112 |
| Bse1I | ACTGG | 2 cut(s) | 753, 894 |
| Bse3DI | GCAATG | 2 cut(s) | 1041, 1164 |
| BseBI | CCWGG | 5 cut(s) | 102, 436, 684, 733, 957 |
| BseDI | CCNNGG | 5 cut(s) | 297, 307, 435, 581, 682 |
| BseGI | GGATG | 3 cut(s) | 68, 123, 1006 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 281, 517 |
| BseMI | GCAATG | 2 cut(s) | 1041, 1164 |
| BseMII | CTCAG | 5 cut(s) | 163, 372, 512, 548, 1089 |
| BseNI | ACTGG | 2 cut(s) | 753, 894 |
| BseRI | GAGGAG | 2 cut(s) | 819, 927 |
| BseX3I | CGGCCG | 1 cut(s) | 1110 |
| BseXI | GCAGC | 1 cut(s) | 920 |
| Bsh1236I | CGCG | 1 cut(s) | 336 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1113 |
| BshFI | GGCC | 8 cut(s) | 8, 312, 350, 451, 662, 731, 893, 1112 |
| BsiEI | CGRYCG | 1 cut(s) | 1113 |
| BsiSI | CCGG | 1 cut(s) | 1113 |
| BslFI | GGGAC | 2 cut(s) | 391, 917 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 281, 517 |
| BsmAI | GTCTC | 3 cut(s) | 160, 616, 1155 |
| BsmFI | GGGAC | 2 cut(s) | 391, 917 |
| BsnI | GGCC | 8 cut(s) | 8, 312, 350, 451, 662, 731, 893, 1112 |
| Bsp1286I | GDGCHC | 1 cut(s) | 140 |
| Bsp143I | GATC | 5 cut(s) | 166, 536, 585, 1003, 1147 |
| BspACI | CCGC | 5 cut(s) | 272, 336, 342, 518, 1116 |
| BspANI | GGCC | 8 cut(s) | 8, 312, 350, 451, 662, 731, 893, 1112 |
| BspCNI | CTCAG | 5 cut(s) | 162, 373, 511, 549, 1088 |
| BspFNI | CGCG | 1 cut(s) | 336 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 6 cut(s) | 139, 286, 509, 579, 933, 1201 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspMI | ACCTGC | 1 cut(s) | 965 |
| BspPI | GGATC | 1 cut(s) | 593 |
| BspQI | GCTCTTC | 2 cut(s) | 539, 589 |
| BsrDI | GCAATG | 2 cut(s) | 1041, 1164 |
| BsrFI | RCCGGY | 1 cut(s) | 1112 |
| BsrI | ACTGG | 2 cut(s) | 753, 894 |
| BssAI | RCCGGY | 1 cut(s) | 1112 |
| BssECI | CCNNGG | 5 cut(s) | 297, 307, 435, 581, 682 |
| BssMI | GATC | 5 cut(s) | 166, 536, 585, 1003, 1147 |
| BssSI | CACGAG | 1 cut(s) | 182 |
| BssT1I | CCWWGG | 1 cut(s) | 581 |
| Bst2BI | CACGAG | 1 cut(s) | 182 |
| Bst2UI | CCWGG | 5 cut(s) | 102, 436, 684, 733, 957 |
| Bst4CI | ACNGT | 5 cut(s) | 326, 429, 750, 1044, 1173 |
| Bst6I | CTCTTC | 7 cut(s) | 539, 589, 606, 612, 683, 1132, 1153 |
| BstC8I | GCNNGC | 3 cut(s) | 453, 633, 1114 |
| BstDEI | CTNAG | 6 cut(s) | 149, 381, 498, 557, 776, 1075 |
| BstDSI | CCRYGG | 1 cut(s) | 307 |
| BstF5I | GGATG | 3 cut(s) | 68, 123, 1006 |
| BstFNI | CGCG | 1 cut(s) | 336 |
| BstH2I | RGCGCY | 1 cut(s) | 297 |
| BstHHI | GCGC | 1 cut(s) | 296 |
| BstKTI | GATC | 5 cut(s) | 169, 539, 588, 1006, 1150 |
| BstMAI | GTCTC | 3 cut(s) | 160, 616, 1155 |
| BstMBI | GATC | 5 cut(s) | 166, 536, 585, 1003, 1147 |
| BstMCI | CGRYCG | 1 cut(s) | 1113 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 32, 448, 668, 833 |
| BstNI | CCWGG | 5 cut(s) | 102, 436, 684, 733, 957 |
| BstNSI | RCATGY | 1 cut(s) | 722 |
| BstSCI | CCNGG | 5 cut(s) | 100, 434, 682, 731, 955 |
| BstSFI | CTRYAG | 2 cut(s) | 453, 550 |
| BstUI | CGCG | 1 cut(s) | 336 |
| BstV1I | GCAGC | 1 cut(s) | 920 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 261 |
| BstZI | CGGCCG | 1 cut(s) | 1110 |
| BsuRI | GGCC | 8 cut(s) | 8, 312, 350, 451, 662, 731, 893, 1112 |
| BtgI | CCRYGG | 1 cut(s) | 307 |
| BtgZI | GCGATG | 1 cut(s) | 1077 |
| BtsCI | GGATG | 3 cut(s) | 68, 123, 1006 |
| BtsIMutI | CAGTG | 4 cut(s) | 157, 331, 610, 760 |
| BveI | ACCTGC | 1 cut(s) | 965 |
| Cac8I | GCNNGC | 3 cut(s) | 453, 633, 1114 |
| CciI | TCATGA | 1 cut(s) | 229 |
| CfoI | GCGC | 1 cut(s) | 296 |
| Cfr10I | RCCGGY | 1 cut(s) | 1112 |
| Cfr13I | GGNCC | 4 cut(s) | 494, 577, 660, 931 |
| CsiI | ACCWGGT | 1 cut(s) | 100 |
| Csp6I | GTAC | 3 cut(s) | 739, 839, 960 |
| CviAII | CATG | 7 cut(s) | 230, 364, 664, 719, 817, 889, 1206 |
| CviQI | GTAC | 3 cut(s) | 739, 839, 960 |
| DdeI | CTNAG | 6 cut(s) | 149, 381, 498, 557, 776, 1075 |
| DpnI | GATC | 5 cut(s) | 168, 538, 587, 1005, 1149 |
| DpnII | GATC | 5 cut(s) | 166, 536, 585, 1003, 1147 |
| EaeI | YGGCCR | 5 cut(s) | 6, 310, 729, 891, 1110 |
| EagI | CGGCCG | 1 cut(s) | 1110 |
| Eam1104I | CTCTTC | 7 cut(s) | 539, 589, 606, 612, 683, 1132, 1153 |
| EarI | CTCTTC | 7 cut(s) | 539, 589, 606, 612, 683, 1132, 1153 |
| EciI | GGCGGA | 1 cut(s) | 261 |
| EclXI | CGGCCG | 1 cut(s) | 1110 |
| Eco130I | CCWWGG | 1 cut(s) | 581 |
| Eco147I | AGGCCT | 2 cut(s) | 350, 451 |
| Eco24I | GRGCYC | 1 cut(s) | 140 |
| Eco32I | GATATC | 1 cut(s) | 984 |
| Eco47I | GGWCC | 3 cut(s) | 494, 577, 931 |
| Eco52I | CGGCCG | 1 cut(s) | 1110 |
| Eco57I | CTGAAG | 1 cut(s) | 1049 |
| EcoO109I | RGGNCCY | 1 cut(s) | 931 |
| EcoRI | GAATTC | 1 cut(s) | 820 |
| EcoRII | CCWGG | 5 cut(s) | 100, 434, 682, 731, 955 |
| EcoRV | GATATC | 1 cut(s) | 984 |
| EcoT14I | CCWWGG | 1 cut(s) | 581 |
| EcoT38I | GRGCYC | 1 cut(s) | 140 |
| ErhI | CCWWGG | 1 cut(s) | 581 |
| FaeI | CATG | 7 cut(s) | 233, 367, 667, 722, 820, 892, 1209 |
| FaqI | GGGAC | 2 cut(s) | 391, 917 |
| FatI | CATG | 7 cut(s) | 229, 363, 663, 718, 816, 888, 1205 |
| FbaI | TGATCA | 1 cut(s) | 1003 |
| FblI | GTMKAC | 1 cut(s) | 553 |
| Fnu4HI | GCNGC | 2 cut(s) | 909, 1117 |
| FokI | GGATG | 3 cut(s) | 55, 130, 993 |
| FriOI | GRGCYC | 1 cut(s) | 140 |
| Fsp4HI | GCNGC | 2 cut(s) | 909, 1117 |
| FspBI | CTAG | 4 cut(s) | 21, 170, 672, 1103 |
| GlaI | GCGC | 1 cut(s) | 295 |
| GluI | GCNGC | 2 cut(s) | 909, 1117 |
| GsuI | CTGGAG | 2 cut(s) | 816, 1164 |
| HaeII | RGCGCY | 1 cut(s) | 297 |
| HaeIII | GGCC | 8 cut(s) | 8, 312, 350, 451, 662, 731, 893, 1112 |
| HapII | CCGG | 1 cut(s) | 1113 |
| HhaI | GCGC | 1 cut(s) | 296 |
| Hin1II | CATG | 7 cut(s) | 233, 367, 667, 722, 820, 892, 1209 |
| Hin6I | GCGC | 1 cut(s) | 294 |
| HinP1I | GCGC | 1 cut(s) | 294 |
| HindIII | AAGCTT | 1 cut(s) | 773 |
| HinfI | GANTC | 6 cut(s) | 395, 403, 461, 675, 709, 1079 |
| HpaII | CCGG | 1 cut(s) | 1113 |
| HphI | GGTGA | 1 cut(s) | 90 |
| Hpy166II | GTNNAC | 1 cut(s) | 554 |
| Hpy188I | TCNGA | 5 cut(s) | 358, 501, 981, 1068, 1078 |
| Hpy188III | TCNNGA | 3 cut(s) | 182, 230, 1151 |
| Hpy8I | GTNNAC | 1 cut(s) | 554 |
| HpyAV | CCTTC | 5 cut(s) | 524, 762, 962, 1073, 1186 |
| HpyCH4III | ACNGT | 5 cut(s) | 326, 429, 750, 1044, 1173 |
| HpyCH4IV | ACGT | 1 cut(s) | 1026 |
| HpyCH4V | TGCA | 6 cut(s) | 35, 128, 455, 631, 792, 1169 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 32, 448, 668, 833 |
| HpyF3I | CTNAG | 6 cut(s) | 149, 381, 498, 557, 776, 1075 |
| HpySE526I | ACGT | 1 cut(s) | 1026 |
| Hsp92II | CATG | 7 cut(s) | 233, 367, 667, 722, 820, 892, 1209 |
| HspAI | GCGC | 1 cut(s) | 294 |
| KroI | GCCGGC | 1 cut(s) | 1112 |
| KroNI | GCCGGC | 1 cut(s) | 1114 |
| Ksp22I | TGATCA | 1 cut(s) | 1003 |
| Kzo9I | GATC | 5 cut(s) | 166, 536, 585, 1003, 1147 |
| LguI | GCTCTTC | 2 cut(s) | 539, 589 |
| LmnI | GCTCC | 3 cut(s) | 143, 832, 1199 |
| Lsp1109I | GCAGC | 1 cut(s) | 920 |
| LweI | GCATC | 1 cut(s) | 1100 |
| MabI | ACCWGGT | 1 cut(s) | 100 |
| MaeI | CTAG | 4 cut(s) | 21, 170, 672, 1103 |
| MaeII | ACGT | 1 cut(s) | 1026 |
| MaeIII | GTNAC | 1 cut(s) | 326 |
| MalI | GATC | 5 cut(s) | 168, 538, 587, 1005, 1149 |
| MboI | GATC | 5 cut(s) | 166, 536, 585, 1003, 1147 |
| MhlI | GDGCHC | 1 cut(s) | 140 |
| MlsI | TGGCCA | 3 cut(s) | 8, 731, 893 |
| MluCI | AATT | 7 cut(s) | 502, 820, 859, 877, 947, 994, 1048 |
| MluNI | TGGCCA | 3 cut(s) | 8, 731, 893 |
| MlyI | GAGTC | 2 cut(s) | 404, 669 |
| MmeI | TCCRAC | 2 cut(s) | 183, 1177 |
| Mox20I | TGGCCA | 3 cut(s) | 8, 731, 893 |
| MroNI | GCCGGC | 1 cut(s) | 1112 |
| MscI | TGGCCA | 3 cut(s) | 8, 731, 893 |
| MseI | TTAA | 1 cut(s) | 567 |
| MslI | CAYNNNNRTG | 3 cut(s) | 228, 411, 717 |
| Msp20I | TGGCCA | 3 cut(s) | 8, 731, 893 |
| MspA1I | CMGCKG | 2 cut(s) | 574, 1142 |
| MspI | CCGG | 1 cut(s) | 1113 |
| MspR9I | CCNGG | 5 cut(s) | 102, 436, 684, 733, 957 |
| MvaI | CCWGG | 5 cut(s) | 102, 436, 684, 733, 957 |
| MvnI | CGCG | 1 cut(s) | 336 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 32, 448, 668, 833 |
| NaeI | GCCGGC | 1 cut(s) | 1114 |
| NdeII | GATC | 5 cut(s) | 166, 536, 585, 1003, 1147 |
| NgoMIV | GCCGGC | 1 cut(s) | 1112 |
| NlaIII | CATG | 7 cut(s) | 233, 367, 667, 722, 820, 892, 1209 |
| NlaIV | GGNNCC | 6 cut(s) | 139, 286, 509, 579, 933, 1201 |
| NmeAIII | GCCGAG | 1 cut(s) | 322 |
| NmuCI | GTSAC | 1 cut(s) | 326 |
| NspI | RCATGY | 1 cut(s) | 722 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PceI | AGGCCT | 2 cut(s) | 350, 451 |
| PciSI | GCTCTTC | 2 cut(s) | 539, 589 |
| PdiI | GCCGGC | 1 cut(s) | 1114 |
| PfeI | GAWTC | 4 cut(s) | 403, 461, 709, 1079 |
| PkrI | GCNGC | 2 cut(s) | 910, 1118 |
| PleI | GAGTC | 2 cut(s) | 403, 669 |
| PpsI | GAGTC | 2 cut(s) | 403, 669 |
| PpuMI | RGGWCCY | 1 cut(s) | 931 |
| PsiI | TTATAA | 1 cut(s) | 725 |
| Psp5II | RGGWCCY | 1 cut(s) | 931 |
| Psp6I | CCWGG | 5 cut(s) | 100, 434, 682, 731, 955 |
| PspGI | CCWGG | 5 cut(s) | 100, 434, 682, 731, 955 |
| PspN4I | GGNNCC | 6 cut(s) | 139, 286, 509, 579, 933, 1201 |
| PspPI | GGNCC | 4 cut(s) | 494, 577, 660, 931 |
| PspPPI | RGGWCCY | 1 cut(s) | 931 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 337, 369 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PvuII | CAGCTG | 2 cut(s) | 574, 1142 |
| RsaI | GTAC | 3 cut(s) | 740, 840, 961 |
| RsaNI | GTAC | 3 cut(s) | 739, 839, 960 |
| RseI | CAYNNNNRTG | 3 cut(s) | 228, 411, 717 |
| SapI | GCTCTTC | 2 cut(s) | 539, 589 |
| SaqAI | TTAA | 1 cut(s) | 567 |
| SatI | GCNGC | 2 cut(s) | 909, 1117 |
| Sau3AI | GATC | 5 cut(s) | 166, 536, 585, 1003, 1147 |
| Sau96I | GGNCC | 4 cut(s) | 494, 577, 660, 931 |
| SchI | GAGTC | 2 cut(s) | 404, 669 |
| ScrFI | CCNGG | 5 cut(s) | 102, 436, 684, 733, 957 |
| SduI | GDGCHC | 1 cut(s) | 140 |
| SexAI | ACCWGGT | 1 cut(s) | 100 |
| SfaNI | GCATC | 1 cut(s) | 1100 |
| SfcI | CTRYAG | 2 cut(s) | 453, 550 |
| SinI | GGWCC | 3 cut(s) | 494, 577, 931 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 228, 411, 717 |
| SmlI | CTYRAG | 2 cut(s) | 55, 470 |
| SmoI | CTYRAG | 2 cut(s) | 55, 470 |
| Sse9I | AATT | 7 cut(s) | 502, 820, 859, 877, 947, 994, 1048 |
| SseBI | AGGCCT | 2 cut(s) | 350, 451 |
| SsiI | CCGC | 5 cut(s) | 272, 336, 342, 518, 1116 |
| SspMI | CTAG | 4 cut(s) | 21, 170, 672, 1103 |
| StuI | AGGCCT | 2 cut(s) | 350, 451 |
| StyD4I | CCNGG | 5 cut(s) | 100, 434, 682, 731, 955 |
| StyI | CCWWGG | 1 cut(s) | 581 |
| TaaI | ACNGT | 5 cut(s) | 326, 429, 750, 1044, 1173 |
| TaiI | ACGT | 1 cut(s) | 1029 |
| TasI | AATT | 7 cut(s) | 502, 820, 859, 877, 947, 994, 1048 |
| TatI | WGTACW | 1 cut(s) | 738 |
| TauI | GCSGC | 1 cut(s) | 1119 |
| TfiI | GAWTC | 4 cut(s) | 403, 461, 709, 1079 |
| Tru1I | TTAA | 1 cut(s) | 567 |
| Tru9I | TTAA | 1 cut(s) | 567 |
| TscAI | CASTG | 4 cut(s) | 157, 331, 610, 760 |
| TseFI | GTSAC | 1 cut(s) | 326 |
| TseI | GCWGC | 1 cut(s) | 908 |
| Tsp45I | GTSAC | 1 cut(s) | 326 |
| TspDTI | ATGAA | 7 cut(s) | 246, 416, 789, 833, 984, 1037, 1168 |
| TspRI | CASTG | 4 cut(s) | 157, 331, 610, 760 |
| VpaK11BI | GGWCC | 3 cut(s) | 494, 577, 931 |
| XapI | RAATTY | 1 cut(s) | 820 |
| XceI | RCATGY | 1 cut(s) | 722 |
| XmiI | GTMKAC | 1 cut(s) | 553 |
| XspI | CTAG | 4 cut(s) | 21, 170, 672, 1103 |