Rmu_sc0002549.1_g000025
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002549.1
Physical Location & Seq
Reverse (-)
105466 .. 107051
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002549.1_g000025.1.cds

Sequence Viewer

Length: 1209 bp
atgatggccaatcacaatgctagtgctataaatgcaacagaaaatccaaatgccttgagttgtttcccatcctcatcttcctgttcttcttcttcttcacctggtttttcaatggggatggtttatgcagatatgggctccctttccctcagtgtctccaactatgatctagtttcttctcacgagagcagttattacaatacctcaaactcaaacctctctcataatcatgaagtggaaaatggtaatacaccatatttctgggggtttccgccgtctttgggaaccagaagcgccgaggaacaccacggccaccacaacaacagtgactttcgcggaggcggtaaggcctgttcagatagcatgagtgatgatgggactgaggaacataatgagtctatgaatcacaaaaatgggcagtcaaaactgtgtgccagggggcattggaggcctgcagaggattccaagctcaaggaacttgttgctctttatggtcctcagaattggaaccttatagcggagaagctggaaggaagatcagggaagagctgtagactgagatggtttaaccagctggacccaaggatcaacagaagagctttcagtgaagaagaggaagagagactaatgcaggctcatagaatatacggcaacaaatgggccatgatagctagactcttccctggaagaaccgataatgctgtgaagaatcattggcatgttataatggccaggaagtacagagaacagtccagtgcttataggagaaggaagcttagtcaatctgtatgcagagcttcatcaatggaggaaaacatgaattcagctcctccagcagtaccatactcatatctcaataattatgggtcaagtggtaattcacacaacatggccagttgggaagaagcagcaataatcacaaacgaaaaggtccctcctccttttcaattccttcctggtacaaatgatgaagcaggtcagatatcatctggtaatttctatgatcatccaccatatatgatgaacgtgatggcaatgcgacagtcaaattactaccatacccttcagagtttctcagattcaacatcagcatcgccaagtctagtttcggccggcggcaaactctcttctacaacatcagctggagatcaggaaagaagagacattgcaccgtccttcattgattttcttggggttggagccacatga

Protein Analysis

402

Amino Acids

44.59

Weight (kDa)

6.38

Isoelectric Point (pI)

62.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010448)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 725
Acc36I ACCTGC 1 cut(s) 965
AccI GTMKAC 1 cut(s) 553
AccII CGCG 1 cut(s) 336
AciI CCGC 5 cut(s) 272, 336, 342, 518, 1116
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 5 cut(s) 6, 310, 729, 891, 1110
AcsI RAATTY 1 cut(s) 820
AcuI CTGAAG 1 cut(s) 1049
AfaI GTAC 3 cut(s) 740, 840, 961
AfiI CCNNNNNNNGG 2 cut(s) 281, 517
AgsI TTSAA 3 cut(s) 111, 947, 1083
AjnI CCWGG 5 cut(s) 100, 434, 682, 731, 955
AjuI GAANNNNNNNTTGG 2 cut(s) 1090, 1122
Alw26I GTCTC 3 cut(s) 160, 616, 1155
AlwI GGATC 1 cut(s) 593
AoxI GGCC 8 cut(s) 6, 310, 348, 449, 660, 729, 891, 1110
ApeKI GCWGC 1 cut(s) 908
ApoI RAATTY 1 cut(s) 820
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 4 cut(s) 494, 577, 660, 931
AsuHPI GGTGA 1 cut(s) 90
AvaII GGWCC 3 cut(s) 494, 577, 931
BalI TGGCCA 3 cut(s) 8, 731, 893
BanII GRGCYC 1 cut(s) 140
BauI CACGAG 1 cut(s) 182
BbvI GCAGC 1 cut(s) 920
BccI CCATC 5 cut(s) 76, 112, 368, 555, 1024
BceAI ACGGC 3 cut(s) 259, 325, 664
BciT130I CCWGG 5 cut(s) 102, 436, 684, 733, 957
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 3 cut(s) 160, 616, 1155
BfaI CTAG 4 cut(s) 21, 170, 672, 1103
BfmI CTRYAG 2 cut(s) 453, 550
BfoI RGCGCY 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 965
BisI GCNGC 2 cut(s) 909, 1117
BlsI GCNGC 2 cut(s) 910, 1118
Bme1390I CCNGG 5 cut(s) 102, 436, 684, 733, 957
Bme18I GGWCC 3 cut(s) 494, 577, 931
BmgT120I GGNCC 4 cut(s) 494, 577, 660, 931
BmiI GGNNCC 6 cut(s) 139, 286, 509, 579, 933, 1201
BmrFI CCNGG 5 cut(s) 102, 436, 684, 733, 957
BmsI GCATC 1 cut(s) 1100
BpmI CTGGAG 2 cut(s) 816, 1164
BpuEI CTTGAG 2 cut(s) 76, 455
BsaJI CCNNGG 5 cut(s) 297, 307, 435, 581, 682
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 517
Bse118I RCCGGY 1 cut(s) 1112
Bse1I ACTGG 2 cut(s) 753, 894
Bse3DI GCAATG 2 cut(s) 1041, 1164
BseBI CCWGG 5 cut(s) 102, 436, 684, 733, 957
BseDI CCNNGG 5 cut(s) 297, 307, 435, 581, 682
BseGI GGATG 3 cut(s) 68, 123, 1006
BseLI CCNNNNNNNGG 2 cut(s) 281, 517
BseMI GCAATG 2 cut(s) 1041, 1164
BseMII CTCAG 5 cut(s) 163, 372, 512, 548, 1089
BseNI ACTGG 2 cut(s) 753, 894
BseRI GAGGAG 2 cut(s) 819, 927
BseX3I CGGCCG 1 cut(s) 1110
BseXI GCAGC 1 cut(s) 920
Bsh1236I CGCG 1 cut(s) 336
Bsh1285I CGRYCG 1 cut(s) 1113
BshFI GGCC 8 cut(s) 8, 312, 350, 451, 662, 731, 893, 1112
BsiEI CGRYCG 1 cut(s) 1113
BsiSI CCGG 1 cut(s) 1113
BslFI GGGAC 2 cut(s) 391, 917
BslI CCNNNNNNNGG 2 cut(s) 281, 517
BsmAI GTCTC 3 cut(s) 160, 616, 1155
BsmFI GGGAC 2 cut(s) 391, 917
BsnI GGCC 8 cut(s) 8, 312, 350, 451, 662, 731, 893, 1112
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 5 cut(s) 166, 536, 585, 1003, 1147
BspACI CCGC 5 cut(s) 272, 336, 342, 518, 1116
BspANI GGCC 8 cut(s) 8, 312, 350, 451, 662, 731, 893, 1112
BspCNI CTCAG 5 cut(s) 162, 373, 511, 549, 1088
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 6 cut(s) 139, 286, 509, 579, 933, 1201
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 965
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 2 cut(s) 539, 589
BsrDI GCAATG 2 cut(s) 1041, 1164
BsrFI RCCGGY 1 cut(s) 1112
BsrI ACTGG 2 cut(s) 753, 894
BssAI RCCGGY 1 cut(s) 1112
BssECI CCNNGG 5 cut(s) 297, 307, 435, 581, 682
BssMI GATC 5 cut(s) 166, 536, 585, 1003, 1147
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 581
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 5 cut(s) 102, 436, 684, 733, 957
Bst4CI ACNGT 5 cut(s) 326, 429, 750, 1044, 1173
Bst6I CTCTTC 7 cut(s) 539, 589, 606, 612, 683, 1132, 1153
BstC8I GCNNGC 3 cut(s) 453, 633, 1114
BstDEI CTNAG 6 cut(s) 149, 381, 498, 557, 776, 1075
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 3 cut(s) 68, 123, 1006
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 5 cut(s) 169, 539, 588, 1006, 1150
BstMAI GTCTC 3 cut(s) 160, 616, 1155
BstMBI GATC 5 cut(s) 166, 536, 585, 1003, 1147
BstMCI CGRYCG 1 cut(s) 1113
BstMWI GCNNNNNNNGC 4 cut(s) 32, 448, 668, 833
BstNI CCWGG 5 cut(s) 102, 436, 684, 733, 957
BstNSI RCATGY 1 cut(s) 722
BstSCI CCNGG 5 cut(s) 100, 434, 682, 731, 955
BstSFI CTRYAG 2 cut(s) 453, 550
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 920
BstXI CCANNNNNNTGG 1 cut(s) 261
BstZI CGGCCG 1 cut(s) 1110
BsuRI GGCC 8 cut(s) 8, 312, 350, 451, 662, 731, 893, 1112
BtgI CCRYGG 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 1077
BtsCI GGATG 3 cut(s) 68, 123, 1006
BtsIMutI CAGTG 4 cut(s) 157, 331, 610, 760
BveI ACCTGC 1 cut(s) 965
Cac8I GCNNGC 3 cut(s) 453, 633, 1114
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 1112
Cfr13I GGNCC 4 cut(s) 494, 577, 660, 931
CsiI ACCWGGT 1 cut(s) 100
Csp6I GTAC 3 cut(s) 739, 839, 960
CviAII CATG 7 cut(s) 230, 364, 664, 719, 817, 889, 1206
CviQI GTAC 3 cut(s) 739, 839, 960
DdeI CTNAG 6 cut(s) 149, 381, 498, 557, 776, 1075
DpnI GATC 5 cut(s) 168, 538, 587, 1005, 1149
DpnII GATC 5 cut(s) 166, 536, 585, 1003, 1147
EaeI YGGCCR 5 cut(s) 6, 310, 729, 891, 1110
EagI CGGCCG 1 cut(s) 1110
Eam1104I CTCTTC 7 cut(s) 539, 589, 606, 612, 683, 1132, 1153
EarI CTCTTC 7 cut(s) 539, 589, 606, 612, 683, 1132, 1153
EciI GGCGGA 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 1110
Eco130I CCWWGG 1 cut(s) 581
Eco147I AGGCCT 2 cut(s) 350, 451
Eco24I GRGCYC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 984
Eco47I GGWCC 3 cut(s) 494, 577, 931
Eco52I CGGCCG 1 cut(s) 1110
Eco57I CTGAAG 1 cut(s) 1049
EcoO109I RGGNCCY 1 cut(s) 931
EcoRI GAATTC 1 cut(s) 820
EcoRII CCWGG 5 cut(s) 100, 434, 682, 731, 955
EcoRV GATATC 1 cut(s) 984
EcoT14I CCWWGG 1 cut(s) 581
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 7 cut(s) 233, 367, 667, 722, 820, 892, 1209
FaqI GGGAC 2 cut(s) 391, 917
FatI CATG 7 cut(s) 229, 363, 663, 718, 816, 888, 1205
FbaI TGATCA 1 cut(s) 1003
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 2 cut(s) 909, 1117
FokI GGATG 3 cut(s) 55, 130, 993
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 909, 1117
FspBI CTAG 4 cut(s) 21, 170, 672, 1103
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 909, 1117
GsuI CTGGAG 2 cut(s) 816, 1164
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 8 cut(s) 8, 312, 350, 451, 662, 731, 893, 1112
HapII CCGG 1 cut(s) 1113
HhaI GCGC 1 cut(s) 296
Hin1II CATG 7 cut(s) 233, 367, 667, 722, 820, 892, 1209
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 6 cut(s) 395, 403, 461, 675, 709, 1079
HpaII CCGG 1 cut(s) 1113
HphI GGTGA 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 5 cut(s) 358, 501, 981, 1068, 1078
Hpy188III TCNNGA 3 cut(s) 182, 230, 1151
Hpy8I GTNNAC 1 cut(s) 554
HpyAV CCTTC 5 cut(s) 524, 762, 962, 1073, 1186
HpyCH4III ACNGT 5 cut(s) 326, 429, 750, 1044, 1173
HpyCH4IV ACGT 1 cut(s) 1026
HpyCH4V TGCA 6 cut(s) 35, 128, 455, 631, 792, 1169
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 448, 668, 833
HpyF3I CTNAG 6 cut(s) 149, 381, 498, 557, 776, 1075
HpySE526I ACGT 1 cut(s) 1026
Hsp92II CATG 7 cut(s) 233, 367, 667, 722, 820, 892, 1209
HspAI GCGC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 1112
KroNI GCCGGC 1 cut(s) 1114
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 5 cut(s) 166, 536, 585, 1003, 1147
LguI GCTCTTC 2 cut(s) 539, 589
LmnI GCTCC 3 cut(s) 143, 832, 1199
Lsp1109I GCAGC 1 cut(s) 920
LweI GCATC 1 cut(s) 1100
MabI ACCWGGT 1 cut(s) 100
MaeI CTAG 4 cut(s) 21, 170, 672, 1103
MaeII ACGT 1 cut(s) 1026
MaeIII GTNAC 1 cut(s) 326
MalI GATC 5 cut(s) 168, 538, 587, 1005, 1149
MboI GATC 5 cut(s) 166, 536, 585, 1003, 1147
MhlI GDGCHC 1 cut(s) 140
MlsI TGGCCA 3 cut(s) 8, 731, 893
MluCI AATT 7 cut(s) 502, 820, 859, 877, 947, 994, 1048
MluNI TGGCCA 3 cut(s) 8, 731, 893
MlyI GAGTC 2 cut(s) 404, 669
MmeI TCCRAC 2 cut(s) 183, 1177
Mox20I TGGCCA 3 cut(s) 8, 731, 893
MroNI GCCGGC 1 cut(s) 1112
MscI TGGCCA 3 cut(s) 8, 731, 893
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 3 cut(s) 228, 411, 717
Msp20I TGGCCA 3 cut(s) 8, 731, 893
MspA1I CMGCKG 2 cut(s) 574, 1142
MspI CCGG 1 cut(s) 1113
MspR9I CCNGG 5 cut(s) 102, 436, 684, 733, 957
MvaI CCWGG 5 cut(s) 102, 436, 684, 733, 957
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 4 cut(s) 32, 448, 668, 833
NaeI GCCGGC 1 cut(s) 1114
NdeII GATC 5 cut(s) 166, 536, 585, 1003, 1147
NgoMIV GCCGGC 1 cut(s) 1112
NlaIII CATG 7 cut(s) 233, 367, 667, 722, 820, 892, 1209
NlaIV GGNNCC 6 cut(s) 139, 286, 509, 579, 933, 1201
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 722
PagI TCATGA 1 cut(s) 229
PceI AGGCCT 2 cut(s) 350, 451
PciSI GCTCTTC 2 cut(s) 539, 589
PdiI GCCGGC 1 cut(s) 1114
PfeI GAWTC 4 cut(s) 403, 461, 709, 1079
PkrI GCNGC 2 cut(s) 910, 1118
PleI GAGTC 2 cut(s) 403, 669
PpsI GAGTC 2 cut(s) 403, 669
PpuMI RGGWCCY 1 cut(s) 931
PsiI TTATAA 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 931
Psp6I CCWGG 5 cut(s) 100, 434, 682, 731, 955
PspGI CCWGG 5 cut(s) 100, 434, 682, 731, 955
PspN4I GGNNCC 6 cut(s) 139, 286, 509, 579, 933, 1201
PspPI GGNCC 4 cut(s) 494, 577, 660, 931
PspPPI RGGWCCY 1 cut(s) 931
PsrI GAACNNNNNNTAC 2 cut(s) 337, 369
PstI CTGCAG 1 cut(s) 457
PvuII CAGCTG 2 cut(s) 574, 1142
RsaI GTAC 3 cut(s) 740, 840, 961
RsaNI GTAC 3 cut(s) 739, 839, 960
RseI CAYNNNNRTG 3 cut(s) 228, 411, 717
SapI GCTCTTC 2 cut(s) 539, 589
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 2 cut(s) 909, 1117
Sau3AI GATC 5 cut(s) 166, 536, 585, 1003, 1147
Sau96I GGNCC 4 cut(s) 494, 577, 660, 931
SchI GAGTC 2 cut(s) 404, 669
ScrFI CCNGG 5 cut(s) 102, 436, 684, 733, 957
SduI GDGCHC 1 cut(s) 140
SexAI ACCWGGT 1 cut(s) 100
SfaNI GCATC 1 cut(s) 1100
SfcI CTRYAG 2 cut(s) 453, 550
SinI GGWCC 3 cut(s) 494, 577, 931
SmiMI CAYNNNNRTG 3 cut(s) 228, 411, 717
SmlI CTYRAG 2 cut(s) 55, 470
SmoI CTYRAG 2 cut(s) 55, 470
Sse9I AATT 7 cut(s) 502, 820, 859, 877, 947, 994, 1048
SseBI AGGCCT 2 cut(s) 350, 451
SsiI CCGC 5 cut(s) 272, 336, 342, 518, 1116
SspMI CTAG 4 cut(s) 21, 170, 672, 1103
StuI AGGCCT 2 cut(s) 350, 451
StyD4I CCNGG 5 cut(s) 100, 434, 682, 731, 955
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 5 cut(s) 326, 429, 750, 1044, 1173
TaiI ACGT 1 cut(s) 1029
TasI AATT 7 cut(s) 502, 820, 859, 877, 947, 994, 1048
TatI WGTACW 1 cut(s) 738
TauI GCSGC 1 cut(s) 1119
TfiI GAWTC 4 cut(s) 403, 461, 709, 1079
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 4 cut(s) 157, 331, 610, 760
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 7 cut(s) 246, 416, 789, 833, 984, 1037, 1168
TspRI CASTG 4 cut(s) 157, 331, 610, 760
VpaK11BI GGWCC 3 cut(s) 494, 577, 931
XapI RAATTY 1 cut(s) 820
XceI RCATGY 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 553
XspI CTAG 4 cut(s) 21, 170, 672, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.