pycom16g06170
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
3951640 .. 3953371
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g06170.2

Sequence Viewer

Length: 1359 bp
ATGATGGCCAACAATGGTGCTATATATGCAACGGAAAACGCAAATGTCTTAAGCTGTTTCTCCTCCTCCTCTTCTTCTTCTCCTTGTTCAATGGGAATGGTTTATGCGGATATGGGCTCTCTTTCTCTGAGATCCAACTATGGAGTATATTCATCTGTTTCTTCCCAGGACAACAGCTACATCTCTAAGCTTTCTGAACCAGAAAATGGGAGGGCTTTCTGGGGTTTTCCTTCTACCAGAAGTTATGAGGATCACCACAACAGCAGTGATCATGATAAGAACCCTAATGAGGGTGGGGTGAGTGTTAGTGAGAGGGAAACAGAAAGTGGGCGATCAAAACTGTGTGCCAGAGGGCATTGGAGGCCTGCTGAGGATTCCAAGCTCAAGGAACTTGTGACTCTTTATGGCCCTCAGAACTGGAACCTTATTGCAGAGAAGCTGGAAGGAAGGTCAGGTAAGAGCTGCAGATTAAGATGGTTTAACCAGCTGGACCCAAGAATCAACAGAAGAGCTTTTACTGAGGAGGAGGAAGAAAAACTAATGCAAGCTCATAGAATATATGGCAACAAGTGGGCCATGATAGCCAGGCTCTTTCCTGGAAGAACTGATAATGCTTTGAAGAACCATTGGCATGTTATCATGGCCAGGAAGTACAGAAAGCAATCCAGTGCTTGTCGGAGGAAGCTAAACCAAACTGTTTACAGAAGCGTGGACGAAAATCCAAGCGTCAATGCAGCCTCGAGGAGTACGAAACCTCCGCCACCTTACGGTGGTCTCAGTCTCCCCAATGGCGGCCTCAGCGGCGGTAGTTCTATATCGGATTTTCCATATGGAACAAGCTATTATGGTGGTGTTGGTTATTATGGCTCAAATGGTTCACAAAACTTGATTAGTTTGGGAGAAGAAGAAGCAATCACAAGGAAAAAATTGATTTCTTATAATAATAGTGGATTTTGCTCACAACAACAACAAACTCCTTTTGAATTCTTCTCTGCTGCATGTAAATCTCAAATACATAATGGTGGTTGTGTTATTGCAGGTCGGAAGAGCAATGAGGTGATGGGGATGATGAGCCAGAGAAGATGTCGGGATGGTTCAGGTGAGGTGGAGGATCATTCATGCGGGGGTACGTACACCCACCATCCTCCACCATACATGAATAAGATGGCAATGCAAGAGTCAAACTTCCCCAGCCTTGTTCATCAAAGCTACTCATATTCTTCATGTCAAGTTTCCGGCGGCAAACCCTCACTATCCGCATCAGCTGCTGACAGAGTTGTTGGCGGCGGCGGCGGCCACCGTGAGACGAGCATTCCACCACCGCCATTCATTGATTTTCTTGGGGTAGGAGGCAGATGA

Protein Analysis

453

Amino Acids

49.62

Weight (kDa)

8.91

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010448)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
AbsI CCTCGAGG 1 cut(s) 739
Acc36I ACCTGC 1 cut(s) 1028
AccB7I CCANNNNNTGG 1 cut(s) 206
AclWI GGATC 3 cut(s) 126, 258, 1119
AcoI YGGCCR 3 cut(s) 6, 642, 1294
AcsI RAATTY 1 cut(s) 983
AfaI GTAC 4 cut(s) 653, 748, 1129, 1133
AfiI CCNNNNNNNGG 6 cut(s) 206, 289, 290, 767, 770, 791
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 3 cut(s) 90, 619, 983
AjnI CCWGG 4 cut(s) 165, 584, 595, 644
Alw26I GTCTC 3 cut(s) 779, 785, 1298
AlwI GGATC 3 cut(s) 126, 258, 1119
AlwNI CAGNNNCTG 1 cut(s) 1268
Ama87I CYCGRG 1 cut(s) 739
AoxI GGCC 7 cut(s) 6, 362, 406, 573, 642, 793, 1294
ApeKI GCWGC 4 cut(s) 462, 734, 995, 1265
ApoI RAATTY 1 cut(s) 983
AspS9I GGNCC 3 cut(s) 407, 490, 573
AsuHPI GGTGA 4 cut(s) 245, 310, 1069, 1112
AvaI CYCGRG 1 cut(s) 739
AvaII GGWCC 1 cut(s) 490
BalI TGGCCA 2 cut(s) 8, 644
BanII GRGCYC 1 cut(s) 119
BarI GAAGNNNNNNTAC 2 cut(s) 499, 531
BbvCI CCTCAGC 2 cut(s) 369, 797
BbvI GCAGC 4 cut(s) 449, 746, 982, 1252
BccI CCATC 5 cut(s) 468, 1054, 1085, 1149, 1159
BciT130I CCWGG 4 cut(s) 167, 586, 597, 646
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 3 cut(s) 779, 785, 1298
BfmI CTRYAG 1 cut(s) 463
BfrI CTTAAG 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 1028
BglI GCCNNNNNGGC 1 cut(s) 801
Bme1390I CCNGG 4 cut(s) 167, 586, 597, 646
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 739
BmgT120I GGNCC 3 cut(s) 407, 490, 573
BmiI GGNNCC 2 cut(s) 422, 492
BmrFI CCNGG 4 cut(s) 167, 586, 597, 646
BmsI GCATC 1 cut(s) 1268
Bpu10I CCTNAGC 2 cut(s) 369, 797
BpuEI CTTGAG 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 1131
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 739, 769
Bsc4I CCNNNNNNNGG 6 cut(s) 206, 289, 290, 767, 770, 791
Bse1I ACTGG 2 cut(s) 422, 666
Bse3DI GCAATG 2 cut(s) 1057, 1176
BseBI CCWGG 4 cut(s) 167, 586, 597, 646
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 3 cut(s) 1071, 1096, 1141
BseLI CCNNNNNNNGG 6 cut(s) 206, 289, 290, 767, 770, 791
BseMI GCAATG 2 cut(s) 1057, 1176
BseMII CTCAG 6 cut(s) 119, 360, 425, 510, 790, 811
BseNI ACTGG 2 cut(s) 422, 666
BseRI GAGGAG 6 cut(s) 52, 55, 58, 536, 539, 757
BseXI GCAGC 4 cut(s) 449, 746, 982, 1252
BseYI CCCAGC 1 cut(s) 1190
BshFI GGCC 7 cut(s) 8, 364, 408, 575, 644, 795, 1296
BsiHKCI CYCGRG 1 cut(s) 739
BsiSI CCGG 1 cut(s) 1236
BslI CCNNNNNNNGG 6 cut(s) 206, 289, 290, 767, 770, 791
BsmAI GTCTC 3 cut(s) 779, 785, 1298
BsmBI CGTCTC 1 cut(s) 1298
BsmI GAATGC 1 cut(s) 1311
BsnI GGCC 7 cut(s) 8, 364, 408, 575, 644, 795, 1296
Bso31I GGTCTC 1 cut(s) 779
BsoBI CYCGRG 1 cut(s) 739
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 5 cut(s) 131, 250, 268, 332, 1111
BspANI GGCC 7 cut(s) 8, 364, 408, 575, 644, 795, 1296
BspCNI CTCAG 6 cut(s) 120, 361, 424, 511, 789, 810
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 422, 492
BspMAI CTGCAG 1 cut(s) 467
BspMI ACCTGC 1 cut(s) 1028
BspPI GGATC 3 cut(s) 126, 258, 1119
BspQI GCTCTTC 2 cut(s) 502, 1040
BspTI CTTAAG 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 779
BsrDI GCAATG 2 cut(s) 1057, 1176
BsrI ACTGG 2 cut(s) 422, 666
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 5 cut(s) 131, 250, 268, 332, 1111
Bst2UI CCWGG 4 cut(s) 167, 586, 597, 646
Bst4CI ACNGT 4 cut(s) 342, 697, 770, 1301
Bst6I CTCTTC 3 cut(s) 76, 502, 1040
BstAFI CTTAAG 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 1265
BstBAI YACGTR 1 cut(s) 1131
BstC8I GCNNGC 2 cut(s) 366, 546
BstDEI CTNAG 7 cut(s) 128, 186, 369, 411, 519, 776, 797
BstF5I GGATG 3 cut(s) 1071, 1096, 1141
BstKTI GATC 5 cut(s) 134, 253, 271, 335, 1114
BstMAI GTCTC 3 cut(s) 779, 785, 1298
BstMBI GATC 5 cut(s) 131, 250, 268, 332, 1111
BstMWI GCNNNNNNNGC 8 cut(s) 26, 361, 581, 798, 801, 1265, 1290, 1293
BstNI CCWGG 4 cut(s) 167, 586, 597, 646
BstNSI RCATGY 2 cut(s) 635, 1002
BstSCI CCNGG 4 cut(s) 165, 584, 595, 644
BstSFI CTRYAG 1 cut(s) 463
BstSNI TACGTA 1 cut(s) 1131
BstV1I GCAGC 4 cut(s) 449, 746, 982, 1252
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 7 cut(s) 8, 364, 408, 575, 644, 795, 1296
BtsCI GGATG 3 cut(s) 1071, 1096, 1141
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 271, 673
BveI ACCTGC 1 cut(s) 1028
Cac8I GCNNGC 2 cut(s) 366, 546
CaiI CAGNNNCTG 1 cut(s) 1268
CciI TCATGA 1 cut(s) 271
Cfr13I GGNCC 3 cut(s) 407, 490, 573
CseI GACGC 1 cut(s) 715
Csp6I GTAC 4 cut(s) 652, 747, 1128, 1132
CviAII CATG 8 cut(s) 272, 577, 632, 640, 999, 1119, 1156, 1224
CviQI GTAC 4 cut(s) 652, 747, 1128, 1132
DdeI CTNAG 7 cut(s) 128, 186, 369, 411, 519, 776, 797
DpnI GATC 5 cut(s) 133, 252, 270, 334, 1113
DpnII GATC 5 cut(s) 131, 250, 268, 332, 1111
EaeI YGGCCR 3 cut(s) 6, 642, 1294
Eam1104I CTCTTC 3 cut(s) 76, 502, 1040
EarI CTCTTC 3 cut(s) 76, 502, 1040
EciI GGCGGA 1 cut(s) 747
Eco105I TACGTA 1 cut(s) 1131
Eco147I AGGCCT 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 779
Eco47I GGWCC 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 739
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 4 cut(s) 165, 584, 595, 644
EcoT38I GRGCYC 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 1298
FaeI CATG 8 cut(s) 275, 580, 635, 643, 1002, 1122, 1159, 1227
FatI CATG 8 cut(s) 271, 576, 631, 639, 998, 1118, 1155, 1223
FauI CCCGC 1 cut(s) 1115
FauNDI CATATG 1 cut(s) 829
FbaI TGATCA 1 cut(s) 268
FokI GGATG 3 cut(s) 1078, 1103, 1128
FriOI GRGCYC 1 cut(s) 119
GsaI CCCAGC 1 cut(s) 1194
HaeIII GGCC 7 cut(s) 8, 364, 408, 575, 644, 795, 1296
HapII CCGG 1 cut(s) 1236
HgaI GACGC 1 cut(s) 715
Hin1II CATG 8 cut(s) 275, 580, 635, 643, 1002, 1122, 1159, 1227
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 4 cut(s) 374, 397, 498, 1178
HpaII CCGG 1 cut(s) 1236
HphI GGTGA 4 cut(s) 245, 310, 1069, 1112
Hpy166II GTNNAC 4 cut(s) 700, 712, 878, 1134
Hpy188I TCNGA 6 cut(s) 129, 196, 414, 678, 820, 1044
Hpy188III TCNNGA 2 cut(s) 272, 1088
Hpy8I GTNNAC 4 cut(s) 700, 712, 878, 1134
HpyAV CCTTC 3 cut(s) 240, 437, 441
HpyCH4III ACNGT 4 cut(s) 342, 697, 770, 1301
HpyCH4IV ACGT 1 cut(s) 1130
HpyCH4V TGCA 8 cut(s) 29, 431, 465, 544, 734, 998, 1037, 1174
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 361, 581, 798, 801, 1265, 1290, 1293
HpyF3I CTNAG 7 cut(s) 128, 186, 369, 411, 519, 776, 797
HpySE526I ACGT 1 cut(s) 1130
Hsp92II CATG 8 cut(s) 275, 580, 635, 643, 1002, 1122, 1159, 1227
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 5 cut(s) 131, 250, 268, 332, 1111
LguI GCTCTTC 2 cut(s) 502, 1040
Lsp1109I GCAGC 4 cut(s) 449, 746, 982, 1252
LweI GCATC 1 cut(s) 1268
MaeII ACGT 1 cut(s) 1130
MaeIII GTNAC 1 cut(s) 394
MalI GATC 5 cut(s) 133, 252, 270, 334, 1113
MboI GATC 5 cut(s) 131, 250, 268, 332, 1111
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 2 cut(s) 8, 644
MluCI AATT 2 cut(s) 926, 983
MluNI TGGCCA 2 cut(s) 8, 644
MlyI GAGTC 2 cut(s) 391, 1187
MmeI TCCRAC 3 cut(s) 159, 656, 1022
Mox20I TGGCCA 2 cut(s) 8, 644
MscI TGGCCA 2 cut(s) 8, 644
MseI TTAA 3 cut(s) 50, 470, 480
MslI CAYNNNNRTG 2 cut(s) 630, 1020
Msp20I TGGCCA 2 cut(s) 8, 644
MspA1I CMGCKG 3 cut(s) 487, 801, 1265
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 1 cut(s) 1236
MspR9I CCNGG 4 cut(s) 167, 586, 597, 646
Mva1269I GAATGC 1 cut(s) 1311
MvaI CCWGG 4 cut(s) 167, 586, 597, 646
MwoI GCNNNNNNNGC 8 cut(s) 26, 361, 581, 798, 801, 1265, 1290, 1293
NdeI CATATG 1 cut(s) 829
NdeII GATC 5 cut(s) 131, 250, 268, 332, 1111
NlaIII CATG 8 cut(s) 275, 580, 635, 643, 1002, 1122, 1159, 1227
NlaIV GGNNCC 2 cut(s) 422, 492
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 2 cut(s) 635, 1002
PaeR7I CTCGAG 1 cut(s) 739
PagI TCATGA 1 cut(s) 271
PceI AGGCCT 1 cut(s) 364
PciSI GCTCTTC 2 cut(s) 502, 1040
PcsI WCGNNNNNNNCGW 1 cut(s) 746
PctI GAATGC 1 cut(s) 1311
PfeI GAWTC 2 cut(s) 374, 498
PflMI CCANNNNNTGG 1 cut(s) 206
PfoI TCCNGGA 1 cut(s) 595
PleI GAGTC 2 cut(s) 391, 1186
PpsI GAGTC 2 cut(s) 391, 1186
Ppu21I YACGTR 1 cut(s) 1131
PsiI TTATAA 1 cut(s) 939
Psp6I CCWGG 4 cut(s) 165, 584, 595, 644
PspFI CCCAGC 1 cut(s) 1190
PspGI CCWGG 4 cut(s) 165, 584, 595, 644
PspN4I GGNNCC 2 cut(s) 422, 492
PspPI GGNCC 3 cut(s) 407, 490, 573
PspXI VCTCGAGB 1 cut(s) 739
PstI CTGCAG 1 cut(s) 467
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 2 cut(s) 487, 1265
RsaI GTAC 4 cut(s) 653, 748, 1129, 1133
RsaNI GTAC 4 cut(s) 652, 747, 1128, 1132
RseI CAYNNNNRTG 2 cut(s) 630, 1020
SapI GCTCTTC 2 cut(s) 502, 1040
SaqAI TTAA 3 cut(s) 50, 470, 480
Sau3AI GATC 5 cut(s) 131, 250, 268, 332, 1111
Sau96I GGNCC 3 cut(s) 407, 490, 573
SchI GAGTC 2 cut(s) 391, 1187
ScrFI CCNGG 4 cut(s) 167, 586, 597, 646
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 1 cut(s) 1268
SfcI CTRYAG 1 cut(s) 463
Sfr274I CTCGAG 1 cut(s) 739
SinI GGWCC 1 cut(s) 490
SlaI CTCGAG 1 cut(s) 739
SmiMI CAYNNNNRTG 2 cut(s) 630, 1020
SmlI CTYRAG 3 cut(s) 49, 383, 739
SmoI CTYRAG 3 cut(s) 49, 383, 739
SnaBI TACGTA 1 cut(s) 1131
Sse9I AATT 2 cut(s) 926, 983
SseBI AGGCCT 1 cut(s) 364
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 4 cut(s) 165, 584, 595, 644
TaaI ACNGT 4 cut(s) 342, 697, 770, 1301
TaiI ACGT 1 cut(s) 1133
TaqI TCGA 1 cut(s) 740
TasI AATT 2 cut(s) 926, 983
TatI WGTACW 1 cut(s) 651
TauI GCSGC 7 cut(s) 795, 804, 1242, 1287, 1290, 1293, 1296
TfiI GAWTC 2 cut(s) 374, 498
Tru1I TTAA 3 cut(s) 50, 470, 480
Tru9I TTAA 3 cut(s) 50, 470, 480
TscAI CASTG 2 cut(s) 271, 673
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 4 cut(s) 462, 734, 995, 1265
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 6 cut(s) 141, 1107, 1172, 1190, 1212, 1318
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 271, 673
Van91I CCANNNNNTGG 1 cut(s) 206
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 1 cut(s) 983
XceI RCATGY 2 cut(s) 635, 1002
XhoI CTCGAG 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.