transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26780 AT1G26780 |
| fragaria_vesca | FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 |
| malus_domestica | MD13G1070400.v1.1 MD16G1071300.v1.1 |
| prunus_persica | Prupe.1G276300_v2.0.a1 |
| pyrus_communis | pycom13g06320 pycom16g06170 |
| rosa_chinensis | RchiOBHm_Chr4g0439571 |
| rosa_laevigata | RLG00000006257 |
| rosa_multiflora | Rmu_sc0002549.1_g000025 |
| rosa_roxburghii | Rroxscaffold_5G00380500 |
| rosa_rugosa | Rorug04G0319900 |
| rosa_samantha | Rh4AG370900 Rh4BG382700 Rh4CG397300 Rh4DG377500 |
| rosa_wichuraiana | Rw4G031620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 939 |
| AbsI | CCTCGAGG | 1 cut(s) | 739 |
| Acc36I | ACCTGC | 1 cut(s) | 1028 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 206 |
| AclWI | GGATC | 3 cut(s) | 126, 258, 1119 |
| AcoI | YGGCCR | 3 cut(s) | 6, 642, 1294 |
| AcsI | RAATTY | 1 cut(s) | 983 |
| AfaI | GTAC | 4 cut(s) | 653, 748, 1129, 1133 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 206, 289, 290, 767, 770, 791 |
| AflII | CTTAAG | 1 cut(s) | 49 |
| AgsI | TTSAA | 3 cut(s) | 90, 619, 983 |
| AjnI | CCWGG | 4 cut(s) | 165, 584, 595, 644 |
| Alw26I | GTCTC | 3 cut(s) | 779, 785, 1298 |
| AlwI | GGATC | 3 cut(s) | 126, 258, 1119 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1268 |
| Ama87I | CYCGRG | 1 cut(s) | 739 |
| AoxI | GGCC | 7 cut(s) | 6, 362, 406, 573, 642, 793, 1294 |
| ApeKI | GCWGC | 4 cut(s) | 462, 734, 995, 1265 |
| ApoI | RAATTY | 1 cut(s) | 983 |
| AspS9I | GGNCC | 3 cut(s) | 407, 490, 573 |
| AsuHPI | GGTGA | 4 cut(s) | 245, 310, 1069, 1112 |
| AvaI | CYCGRG | 1 cut(s) | 739 |
| AvaII | GGWCC | 1 cut(s) | 490 |
| BalI | TGGCCA | 2 cut(s) | 8, 644 |
| BanII | GRGCYC | 1 cut(s) | 119 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 499, 531 |
| BbvCI | CCTCAGC | 2 cut(s) | 369, 797 |
| BbvI | GCAGC | 4 cut(s) | 449, 746, 982, 1252 |
| BccI | CCATC | 5 cut(s) | 468, 1054, 1085, 1149, 1159 |
| BciT130I | CCWGG | 4 cut(s) | 167, 586, 597, 646 |
| BclI | TGATCA | 1 cut(s) | 268 |
| BcoDI | GTCTC | 3 cut(s) | 779, 785, 1298 |
| BfmI | CTRYAG | 1 cut(s) | 463 |
| BfrI | CTTAAG | 1 cut(s) | 49 |
| BfuAI | ACCTGC | 1 cut(s) | 1028 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 801 |
| Bme1390I | CCNGG | 4 cut(s) | 167, 586, 597, 646 |
| Bme18I | GGWCC | 1 cut(s) | 490 |
| BmeT110I | CYCGRG | 1 cut(s) | 739 |
| BmgT120I | GGNCC | 3 cut(s) | 407, 490, 573 |
| BmiI | GGNNCC | 2 cut(s) | 422, 492 |
| BmrFI | CCNGG | 4 cut(s) | 167, 586, 597, 646 |
| BmsI | GCATC | 1 cut(s) | 1268 |
| Bpu10I | CCTNAGC | 2 cut(s) | 369, 797 |
| BpuEI | CTTGAG | 1 cut(s) | 368 |
| BsaAI | YACGTR | 1 cut(s) | 1131 |
| BsaI | GGTCTC | 1 cut(s) | 779 |
| BsaJI | CCNNGG | 1 cut(s) | 165 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 739, 769 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 206, 289, 290, 767, 770, 791 |
| Bse1I | ACTGG | 2 cut(s) | 422, 666 |
| Bse3DI | GCAATG | 2 cut(s) | 1057, 1176 |
| BseBI | CCWGG | 4 cut(s) | 167, 586, 597, 646 |
| BseDI | CCNNGG | 1 cut(s) | 165 |
| BseGI | GGATG | 3 cut(s) | 1071, 1096, 1141 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 206, 289, 290, 767, 770, 791 |
| BseMI | GCAATG | 2 cut(s) | 1057, 1176 |
| BseMII | CTCAG | 6 cut(s) | 119, 360, 425, 510, 790, 811 |
| BseNI | ACTGG | 2 cut(s) | 422, 666 |
| BseRI | GAGGAG | 6 cut(s) | 52, 55, 58, 536, 539, 757 |
| BseXI | GCAGC | 4 cut(s) | 449, 746, 982, 1252 |
| BseYI | CCCAGC | 1 cut(s) | 1190 |
| BshFI | GGCC | 7 cut(s) | 8, 364, 408, 575, 644, 795, 1296 |
| BsiHKCI | CYCGRG | 1 cut(s) | 739 |
| BsiSI | CCGG | 1 cut(s) | 1236 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 206, 289, 290, 767, 770, 791 |
| BsmAI | GTCTC | 3 cut(s) | 779, 785, 1298 |
| BsmBI | CGTCTC | 1 cut(s) | 1298 |
| BsmI | GAATGC | 1 cut(s) | 1311 |
| BsnI | GGCC | 7 cut(s) | 8, 364, 408, 575, 644, 795, 1296 |
| Bso31I | GGTCTC | 1 cut(s) | 779 |
| BsoBI | CYCGRG | 1 cut(s) | 739 |
| Bsp1286I | GDGCHC | 1 cut(s) | 119 |
| Bsp143I | GATC | 5 cut(s) | 131, 250, 268, 332, 1111 |
| BspANI | GGCC | 7 cut(s) | 8, 364, 408, 575, 644, 795, 1296 |
| BspCNI | CTCAG | 6 cut(s) | 120, 361, 424, 511, 789, 810 |
| BspHI | TCATGA | 1 cut(s) | 271 |
| BspLI | GGNNCC | 2 cut(s) | 422, 492 |
| BspMAI | CTGCAG | 1 cut(s) | 467 |
| BspMI | ACCTGC | 1 cut(s) | 1028 |
| BspPI | GGATC | 3 cut(s) | 126, 258, 1119 |
| BspQI | GCTCTTC | 2 cut(s) | 502, 1040 |
| BspTI | CTTAAG | 1 cut(s) | 49 |
| BspTNI | GGTCTC | 1 cut(s) | 779 |
| BsrDI | GCAATG | 2 cut(s) | 1057, 1176 |
| BsrI | ACTGG | 2 cut(s) | 422, 666 |
| BssECI | CCNNGG | 1 cut(s) | 165 |
| BssMI | GATC | 5 cut(s) | 131, 250, 268, 332, 1111 |
| Bst2UI | CCWGG | 4 cut(s) | 167, 586, 597, 646 |
| Bst4CI | ACNGT | 4 cut(s) | 342, 697, 770, 1301 |
| Bst6I | CTCTTC | 3 cut(s) | 76, 502, 1040 |
| BstAFI | CTTAAG | 1 cut(s) | 49 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1265 |
| BstBAI | YACGTR | 1 cut(s) | 1131 |
| BstC8I | GCNNGC | 2 cut(s) | 366, 546 |
| BstDEI | CTNAG | 7 cut(s) | 128, 186, 369, 411, 519, 776, 797 |
| BstF5I | GGATG | 3 cut(s) | 1071, 1096, 1141 |
| BstKTI | GATC | 5 cut(s) | 134, 253, 271, 335, 1114 |
| BstMAI | GTCTC | 3 cut(s) | 779, 785, 1298 |
| BstMBI | GATC | 5 cut(s) | 131, 250, 268, 332, 1111 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 26, 361, 581, 798, 801, 1265, 1290, 1293 |
| BstNI | CCWGG | 4 cut(s) | 167, 586, 597, 646 |
| BstNSI | RCATGY | 2 cut(s) | 635, 1002 |
| BstSCI | CCNGG | 4 cut(s) | 165, 584, 595, 644 |
| BstSFI | CTRYAG | 1 cut(s) | 463 |
| BstSNI | TACGTA | 1 cut(s) | 1131 |
| BstV1I | GCAGC | 4 cut(s) | 449, 746, 982, 1252 |
| BstX2I | RGATCY | 1 cut(s) | 131 |
| BstYI | RGATCY | 1 cut(s) | 131 |
| BsuRI | GGCC | 7 cut(s) | 8, 364, 408, 575, 644, 795, 1296 |
| BtsCI | GGATG | 3 cut(s) | 1071, 1096, 1141 |
| BtsI | GCAGTG | 1 cut(s) | 271 |
| BtsIMutI | CAGTG | 2 cut(s) | 271, 673 |
| BveI | ACCTGC | 1 cut(s) | 1028 |
| Cac8I | GCNNGC | 2 cut(s) | 366, 546 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1268 |
| CciI | TCATGA | 1 cut(s) | 271 |
| Cfr13I | GGNCC | 3 cut(s) | 407, 490, 573 |
| CseI | GACGC | 1 cut(s) | 715 |
| Csp6I | GTAC | 4 cut(s) | 652, 747, 1128, 1132 |
| CviAII | CATG | 8 cut(s) | 272, 577, 632, 640, 999, 1119, 1156, 1224 |
| CviQI | GTAC | 4 cut(s) | 652, 747, 1128, 1132 |
| DdeI | CTNAG | 7 cut(s) | 128, 186, 369, 411, 519, 776, 797 |
| DpnI | GATC | 5 cut(s) | 133, 252, 270, 334, 1113 |
| DpnII | GATC | 5 cut(s) | 131, 250, 268, 332, 1111 |
| EaeI | YGGCCR | 3 cut(s) | 6, 642, 1294 |
| Eam1104I | CTCTTC | 3 cut(s) | 76, 502, 1040 |
| EarI | CTCTTC | 3 cut(s) | 76, 502, 1040 |
| EciI | GGCGGA | 1 cut(s) | 747 |
| Eco105I | TACGTA | 1 cut(s) | 1131 |
| Eco147I | AGGCCT | 1 cut(s) | 364 |
| Eco24I | GRGCYC | 1 cut(s) | 119 |
| Eco31I | GGTCTC | 1 cut(s) | 779 |
| Eco47I | GGWCC | 1 cut(s) | 490 |
| Eco88I | CYCGRG | 1 cut(s) | 739 |
| EcoRI | GAATTC | 1 cut(s) | 983 |
| EcoRII | CCWGG | 4 cut(s) | 165, 584, 595, 644 |
| EcoT38I | GRGCYC | 1 cut(s) | 119 |
| Esp3I | CGTCTC | 1 cut(s) | 1298 |
| FaeI | CATG | 8 cut(s) | 275, 580, 635, 643, 1002, 1122, 1159, 1227 |
| FatI | CATG | 8 cut(s) | 271, 576, 631, 639, 998, 1118, 1155, 1223 |
| FauI | CCCGC | 1 cut(s) | 1115 |
| FauNDI | CATATG | 1 cut(s) | 829 |
| FbaI | TGATCA | 1 cut(s) | 268 |
| FokI | GGATG | 3 cut(s) | 1078, 1103, 1128 |
| FriOI | GRGCYC | 1 cut(s) | 119 |
| GsaI | CCCAGC | 1 cut(s) | 1194 |
| HaeIII | GGCC | 7 cut(s) | 8, 364, 408, 575, 644, 795, 1296 |
| HapII | CCGG | 1 cut(s) | 1236 |
| HgaI | GACGC | 1 cut(s) | 715 |
| Hin1II | CATG | 8 cut(s) | 275, 580, 635, 643, 1002, 1122, 1159, 1227 |
| HindIII | AAGCTT | 1 cut(s) | 188 |
| HinfI | GANTC | 4 cut(s) | 374, 397, 498, 1178 |
| HpaII | CCGG | 1 cut(s) | 1236 |
| HphI | GGTGA | 4 cut(s) | 245, 310, 1069, 1112 |
| Hpy166II | GTNNAC | 4 cut(s) | 700, 712, 878, 1134 |
| Hpy188I | TCNGA | 6 cut(s) | 129, 196, 414, 678, 820, 1044 |
| Hpy188III | TCNNGA | 2 cut(s) | 272, 1088 |
| Hpy8I | GTNNAC | 4 cut(s) | 700, 712, 878, 1134 |
| HpyAV | CCTTC | 3 cut(s) | 240, 437, 441 |
| HpyCH4III | ACNGT | 4 cut(s) | 342, 697, 770, 1301 |
| HpyCH4IV | ACGT | 1 cut(s) | 1130 |
| HpyCH4V | TGCA | 8 cut(s) | 29, 431, 465, 544, 734, 998, 1037, 1174 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 26, 361, 581, 798, 801, 1265, 1290, 1293 |
| HpyF3I | CTNAG | 7 cut(s) | 128, 186, 369, 411, 519, 776, 797 |
| HpySE526I | ACGT | 1 cut(s) | 1130 |
| Hsp92II | CATG | 8 cut(s) | 275, 580, 635, 643, 1002, 1122, 1159, 1227 |
| Ksp22I | TGATCA | 1 cut(s) | 268 |
| Kzo9I | GATC | 5 cut(s) | 131, 250, 268, 332, 1111 |
| LguI | GCTCTTC | 2 cut(s) | 502, 1040 |
| Lsp1109I | GCAGC | 4 cut(s) | 449, 746, 982, 1252 |
| LweI | GCATC | 1 cut(s) | 1268 |
| MaeII | ACGT | 1 cut(s) | 1130 |
| MaeIII | GTNAC | 1 cut(s) | 394 |
| MalI | GATC | 5 cut(s) | 133, 252, 270, 334, 1113 |
| MboI | GATC | 5 cut(s) | 131, 250, 268, 332, 1111 |
| MflI | RGATCY | 1 cut(s) | 131 |
| MhlI | GDGCHC | 1 cut(s) | 119 |
| MlsI | TGGCCA | 2 cut(s) | 8, 644 |
| MluCI | AATT | 2 cut(s) | 926, 983 |
| MluNI | TGGCCA | 2 cut(s) | 8, 644 |
| MlyI | GAGTC | 2 cut(s) | 391, 1187 |
| MmeI | TCCRAC | 3 cut(s) | 159, 656, 1022 |
| Mox20I | TGGCCA | 2 cut(s) | 8, 644 |
| MscI | TGGCCA | 2 cut(s) | 8, 644 |
| MseI | TTAA | 3 cut(s) | 50, 470, 480 |
| MslI | CAYNNNNRTG | 2 cut(s) | 630, 1020 |
| Msp20I | TGGCCA | 2 cut(s) | 8, 644 |
| MspA1I | CMGCKG | 3 cut(s) | 487, 801, 1265 |
| MspCI | CTTAAG | 1 cut(s) | 49 |
| MspI | CCGG | 1 cut(s) | 1236 |
| MspR9I | CCNGG | 4 cut(s) | 167, 586, 597, 646 |
| Mva1269I | GAATGC | 1 cut(s) | 1311 |
| MvaI | CCWGG | 4 cut(s) | 167, 586, 597, 646 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 26, 361, 581, 798, 801, 1265, 1290, 1293 |
| NdeI | CATATG | 1 cut(s) | 829 |
| NdeII | GATC | 5 cut(s) | 131, 250, 268, 332, 1111 |
| NlaIII | CATG | 8 cut(s) | 275, 580, 635, 643, 1002, 1122, 1159, 1227 |
| NlaIV | GGNNCC | 2 cut(s) | 422, 492 |
| NmuCI | GTSAC | 1 cut(s) | 394 |
| NspI | RCATGY | 2 cut(s) | 635, 1002 |
| PaeR7I | CTCGAG | 1 cut(s) | 739 |
| PagI | TCATGA | 1 cut(s) | 271 |
| PceI | AGGCCT | 1 cut(s) | 364 |
| PciSI | GCTCTTC | 2 cut(s) | 502, 1040 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 746 |
| PctI | GAATGC | 1 cut(s) | 1311 |
| PfeI | GAWTC | 2 cut(s) | 374, 498 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 206 |
| PfoI | TCCNGGA | 1 cut(s) | 595 |
| PleI | GAGTC | 2 cut(s) | 391, 1186 |
| PpsI | GAGTC | 2 cut(s) | 391, 1186 |
| Ppu21I | YACGTR | 1 cut(s) | 1131 |
| PsiI | TTATAA | 1 cut(s) | 939 |
| Psp6I | CCWGG | 4 cut(s) | 165, 584, 595, 644 |
| PspFI | CCCAGC | 1 cut(s) | 1190 |
| PspGI | CCWGG | 4 cut(s) | 165, 584, 595, 644 |
| PspN4I | GGNNCC | 2 cut(s) | 422, 492 |
| PspPI | GGNCC | 3 cut(s) | 407, 490, 573 |
| PspXI | VCTCGAGB | 1 cut(s) | 739 |
| PstI | CTGCAG | 1 cut(s) | 467 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1268 |
| PsuI | RGATCY | 1 cut(s) | 131 |
| PvuII | CAGCTG | 2 cut(s) | 487, 1265 |
| RsaI | GTAC | 4 cut(s) | 653, 748, 1129, 1133 |
| RsaNI | GTAC | 4 cut(s) | 652, 747, 1128, 1132 |
| RseI | CAYNNNNRTG | 2 cut(s) | 630, 1020 |
| SapI | GCTCTTC | 2 cut(s) | 502, 1040 |
| SaqAI | TTAA | 3 cut(s) | 50, 470, 480 |
| Sau3AI | GATC | 5 cut(s) | 131, 250, 268, 332, 1111 |
| Sau96I | GGNCC | 3 cut(s) | 407, 490, 573 |
| SchI | GAGTC | 2 cut(s) | 391, 1187 |
| ScrFI | CCNGG | 4 cut(s) | 167, 586, 597, 646 |
| SduI | GDGCHC | 1 cut(s) | 119 |
| SfaNI | GCATC | 1 cut(s) | 1268 |
| SfcI | CTRYAG | 1 cut(s) | 463 |
| Sfr274I | CTCGAG | 1 cut(s) | 739 |
| SinI | GGWCC | 1 cut(s) | 490 |
| SlaI | CTCGAG | 1 cut(s) | 739 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 630, 1020 |
| SmlI | CTYRAG | 3 cut(s) | 49, 383, 739 |
| SmoI | CTYRAG | 3 cut(s) | 49, 383, 739 |
| SnaBI | TACGTA | 1 cut(s) | 1131 |
| Sse9I | AATT | 2 cut(s) | 926, 983 |
| SseBI | AGGCCT | 1 cut(s) | 364 |
| StuI | AGGCCT | 1 cut(s) | 364 |
| StyD4I | CCNGG | 4 cut(s) | 165, 584, 595, 644 |
| TaaI | ACNGT | 4 cut(s) | 342, 697, 770, 1301 |
| TaiI | ACGT | 1 cut(s) | 1133 |
| TaqI | TCGA | 1 cut(s) | 740 |
| TasI | AATT | 2 cut(s) | 926, 983 |
| TatI | WGTACW | 1 cut(s) | 651 |
| TauI | GCSGC | 7 cut(s) | 795, 804, 1242, 1287, 1290, 1293, 1296 |
| TfiI | GAWTC | 2 cut(s) | 374, 498 |
| Tru1I | TTAA | 3 cut(s) | 50, 470, 480 |
| Tru9I | TTAA | 3 cut(s) | 50, 470, 480 |
| TscAI | CASTG | 2 cut(s) | 271, 673 |
| TseFI | GTSAC | 1 cut(s) | 394 |
| TseI | GCWGC | 4 cut(s) | 462, 734, 995, 1265 |
| Tsp45I | GTSAC | 1 cut(s) | 394 |
| TspDTI | ATGAA | 6 cut(s) | 141, 1107, 1172, 1190, 1212, 1318 |
| TspGWI | ACGGA | 1 cut(s) | 47 |
| TspRI | CASTG | 2 cut(s) | 271, 673 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 206 |
| Vha464I | CTTAAG | 1 cut(s) | 49 |
| VpaK11BI | GGWCC | 1 cut(s) | 490 |
| XapI | RAATTY | 1 cut(s) | 983 |
| XceI | RCATGY | 2 cut(s) | 635, 1002 |
| XhoI | CTCGAG | 1 cut(s) | 739 |