Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010448

Physical Location & Seq

Genomic Coordinates Forward (+)

59517611 .. 59519767

Gene Structure 2157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG377500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGGGCATGATGGCCAATCACAATGCTAGTGCTATAAATGCAACAGAAAATCCAAATGCCTTGAGTTGTTTCCCATCCTCATCTTCCTCTTCTTCTTCTTCTTCACCTGGTTTTTCAATGGGGATGGTTTATGCAGATATGGGCTCCCTCTCCCTTAGTGCCTCCAACTATGATCTAGTTTCTTCTCACGAGAGCAGTTATTACAATACCTCAAACTCAAACCTCTCTCATAATCATGAAGTGGAAAATGGTAATACACCATATTTCTGGGGGTTTCCGCCGTCTTTGGGAACCAGAAGCGCCGAGGAACACCACGGCCACCACAACAATAGTGACTTTCGCGGAGGCGGTAAGGCCTGTTCAGATAGCATGAGTGATGATGGGACTGAGGAACATAATGAGTCTATGAATCACAAAAATGGGCAGTCAAAACTGTGTGCCAGGGGGCATTGGAGGCCTGCAGAGGATTCCAAGCTCAAGGAACTTGTTGCTCTTTATGGTCCTCAGAATTGGAACCTTATAGCGGAGAAGCTGGAAGGAAGATCAGGGAAGAGCTGTAGACTGAGATGGTTTAACCAGCTGGACCCAAGGATCAACAGAAGAGCTTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCTCATAGAATATACGGCAACAAATGGGCCATGATAGCTAGGCTCTTCCCTGGAAGAACCGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCCAGGAAGTACAGAGAACAGTCCAGTGCTTATAGGAGAAGGAAGCTTAGTCAATCTGTATACAGAGCTTCATCAATGGAGGAAAACATGAATTCAGCTCCTCCAGCAGTACCATACTCATATCTCAATAATTATGGGTCAAGTGGTAATTCACACAACATGGCCAGTTGGGAAGAAGCAGCAATAATCACAAACGAAAAGGTCCCTCCTCCTTTTCAATTCCTTCCTGGTATGTCTGTCCCTCGAGATTCTCTCTCTATTTCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

335

Amino Acids

37.5

Weight (kDa)

7.78

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	149 - 195	4.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	152 - 212	1.8e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	201 - 243	8.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	204 - 252	2.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26780 AT1G26780
fragaria_vesca	FvH4_4g31190 FvH4_4g31190 FvH4_4g31190 FvH4_4g31190
malus_domestica	MD13G1070400.v1.1 MD16G1071300.v1.1
prunus_persica	Prupe.1G276300_v2.0.a1
pyrus_communis	pycom13g06320 pycom16g06170
rosa_chinensis	RchiOBHm_Chr4g0439571
rosa_laevigata	RLG00000006257
rosa_multiflora	Rmu_sc0002549.1_g000025
rosa_roxburghii	Rroxscaffold_5G00380500
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370900 Rh4BG382700 Rh4CG397300 Rh4DG377500
rosa_wichuraiana	Rw4G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AccI	GTMKAC	2 cut(s)	562, 798
AccII	CGCG	1 cut(s)	345
AciI	CCGC	4 cut(s)	281, 345, 351, 527
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	4 cut(s)	15, 319, 738, 900
AcsI	RAATTY	1 cut(s)	829
AfaI	GTAC	2 cut(s)	749, 849
AfiI	CCNNNNNNNGG	2 cut(s)	290, 526
AgsI	TTSAA	2 cut(s)	120, 956
AjnI	CCWGG	5 cut(s)	109, 443, 691, 740, 964
AluBI	AGCT	9 cut(s)	478, 535, 558, 583, 608, 680, 784, 806, 836
AluI	AGCT	9 cut(s)	478, 535, 558, 583, 608, 680, 784, 806, 836
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	981
AoxI	GGCC	7 cut(s)	15, 319, 357, 458, 669, 738, 900
ApeKI	GCWGC	1 cut(s)	917
ApoI	RAATTY	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	4 cut(s)	503, 586, 669, 940
AsuHPI	GGTGA	1 cut(s)	99
AvaI	CYCGRG	1 cut(s)	981
AvaII	GGWCC	3 cut(s)	503, 586, 940
BalI	TGGCCA	3 cut(s)	17, 740, 902
BanII	GRGCYC	1 cut(s)	149
BauI	CACGAG	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	929
BccI	CCATC	5 cut(s)	7, 85, 121, 377, 564
BceAI	ACGGC	3 cut(s)	268, 334, 673
BciT130I	CCWGG	5 cut(s)	111, 445, 693, 742, 966
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	3 cut(s)	30, 179, 681
BfmI	CTRYAG	2 cut(s)	462, 559
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	1 cut(s)	918
BlsI	GCNGC	1 cut(s)	919
Bme1390I	CCNGG	5 cut(s)	111, 445, 693, 742, 966
Bme18I	GGWCC	3 cut(s)	503, 586, 940
BmeT110I	CYCGRG	1 cut(s)	981
BmgT120I	GGNCC	4 cut(s)	503, 586, 669, 940
BmiI	GGNNCC	5 cut(s)	148, 295, 518, 588, 942
BmrFI	CCNGG	5 cut(s)	111, 445, 693, 742, 966
BplI	GAGNNNNNCTC	2 cut(s)	975, 1007
BpmI	CTGGAG	1 cut(s)	825
BpuEI	CTTGAG	2 cut(s)	85, 464
BsaJI	CCNNGG	5 cut(s)	306, 316, 444, 590, 691
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 526
Bse1I	ACTGG	2 cut(s)	762, 903
BseBI	CCWGG	5 cut(s)	111, 445, 693, 742, 966
BseDI	CCNNGG	5 cut(s)	306, 316, 444, 590, 691
BseGI	GGATG	2 cut(s)	77, 132
BseLI	CCNNNNNNNGG	2 cut(s)	290, 526
BseMII	CTCAG	3 cut(s)	381, 521, 557
BseNI	ACTGG	2 cut(s)	762, 903
BseRI	GAGGAG	2 cut(s)	828, 936
BseXI	GCAGC	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	7 cut(s)	17, 321, 359, 460, 671, 740, 902
BsiHKCI	CYCGRG	1 cut(s)	981
BslFI	GGGAC	3 cut(s)	400, 926, 962
BslI	CCNNNNNNNGG	2 cut(s)	290, 526
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	3 cut(s)	400, 926, 962
BsnI	GGCC	7 cut(s)	17, 321, 359, 460, 671, 740, 902
BsoBI	CYCGRG	1 cut(s)	981
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	175, 545, 594
BspACI	CCGC	4 cut(s)	281, 345, 351, 527
BspANI	GGCC	7 cut(s)	17, 321, 359, 460, 671, 740, 902
BspCNI	CTCAG	3 cut(s)	382, 520, 558
BspFNI	CGCG	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	5 cut(s)	148, 295, 518, 588, 942
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	1 cut(s)	602
BspQI	GCTCTTC	3 cut(s)	548, 598, 692
BsrI	ACTGG	2 cut(s)	762, 903
BssECI	CCNNGG	5 cut(s)	306, 316, 444, 590, 691
BssMI	GATC	3 cut(s)	175, 545, 594
BssNAI	GTATAC	1 cut(s)	799
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	590
Bst1107I	GTATAC	1 cut(s)	799
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	5 cut(s)	111, 445, 693, 742, 966
Bst4CI	ACNGT	2 cut(s)	438, 759
Bst6I	CTCTTC	6 cut(s)	97, 548, 598, 615, 621, 692
BstC8I	GCNNGC	2 cut(s)	462, 642
BstDEI	CTNAG	5 cut(s)	158, 390, 507, 566, 785
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	77, 132
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	3 cut(s)	178, 548, 597
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	3 cut(s)	175, 545, 594
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 457, 677, 842
BstNI	CCWGG	5 cut(s)	111, 445, 693, 742, 966
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	5 cut(s)	109, 443, 691, 740, 964
BstSFI	CTRYAG	2 cut(s)	462, 559
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	929
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstZ17I	GTATAC	1 cut(s)	799
BsuRI	GGCC	7 cut(s)	17, 321, 359, 460, 671, 740, 902
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	77, 132
BtsIMutI	CAGTG	2 cut(s)	619, 769
Cac8I	GCNNGC	2 cut(s)	462, 642
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	4 cut(s)	503, 586, 669, 940
CsiI	ACCWGGT	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	748, 848
CviAII	CATG	7 cut(s)	10, 239, 373, 673, 728, 826, 898
CviQI	GTAC	2 cut(s)	748, 848
DdeI	CTNAG	5 cut(s)	158, 390, 507, 566, 785
DpnI	GATC	3 cut(s)	177, 547, 596
DpnII	GATC	3 cut(s)	175, 545, 594
EaeI	YGGCCR	4 cut(s)	15, 319, 738, 900
Eam1104I	CTCTTC	6 cut(s)	97, 548, 598, 615, 621, 692
EarI	CTCTTC	6 cut(s)	97, 548, 598, 615, 621, 692
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	590
Eco147I	AGGCCT	2 cut(s)	359, 460
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	3 cut(s)	503, 586, 940
Eco88I	CYCGRG	1 cut(s)	981
EcoO109I	RGGNCCY	1 cut(s)	940
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	5 cut(s)	109, 443, 691, 740, 964
EcoT14I	CCWWGG	1 cut(s)	590
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	590
FaeI	CATG	7 cut(s)	13, 242, 376, 676, 731, 829, 901
FaqI	GGGAC	3 cut(s)	400, 926, 962
FatI	CATG	7 cut(s)	9, 238, 372, 672, 727, 825, 897
FblI	GTMKAC	2 cut(s)	562, 798
Fnu4HI	GCNGC	1 cut(s)	918
FokI	GGATG	2 cut(s)	64, 139
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	918
FspBI	CTAG	3 cut(s)	30, 179, 681
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	918
GsuI	CTGGAG	1 cut(s)	825
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	7 cut(s)	17, 321, 359, 460, 671, 740, 902
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	7 cut(s)	13, 242, 376, 676, 731, 829, 901
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	5 cut(s)	404, 412, 470, 718, 986
HphI	GGTGA	1 cut(s)	99
Hpy166II	GTNNAC	2 cut(s)	563, 799
Hpy188I	TCNGA	2 cut(s)	367, 510
Hpy188III	TCNNGA	3 cut(s)	191, 239, 983
Hpy8I	GTNNAC	2 cut(s)	563, 799
HpyAV	CCTTC	3 cut(s)	533, 771, 971
HpyCH4III	ACNGT	2 cut(s)	438, 759
HpyCH4V	TGCA	4 cut(s)	44, 137, 464, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 457, 677, 842
HpyF3I	CTNAG	5 cut(s)	158, 390, 507, 566, 785
Hsp92II	CATG	7 cut(s)	13, 242, 376, 676, 731, 829, 901
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	175, 545, 594
LguI	GCTCTTC	3 cut(s)	548, 598, 692
LmnI	GCTCC	2 cut(s)	152, 841
Lsp1109I	GCAGC	1 cut(s)	929
MabI	ACCWGGT	1 cut(s)	109
MaeI	CTAG	3 cut(s)	30, 179, 681
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	177, 547, 596
MboI	GATC	3 cut(s)	175, 545, 594
MhlI	GDGCHC	1 cut(s)	149
MlsI	TGGCCA	3 cut(s)	17, 740, 902
MluCI	AATT	5 cut(s)	511, 829, 868, 886, 956
MluNI	TGGCCA	3 cut(s)	17, 740, 902
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	3 cut(s)	17, 740, 902
MscI	TGGCCA	3 cut(s)	17, 740, 902
MseI	TTAA	2 cut(s)	576, 1006
MslI	CAYNNNNRTG	3 cut(s)	237, 420, 726
Msp20I	TGGCCA	3 cut(s)	17, 740, 902
MspA1I	CMGCKG	1 cut(s)	583
MspR9I	CCNGG	5 cut(s)	111, 445, 693, 742, 966
MvaI	CCWGG	5 cut(s)	111, 445, 693, 742, 966
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	4 cut(s)	41, 457, 677, 842
NdeII	GATC	3 cut(s)	175, 545, 594
NlaIII	CATG	7 cut(s)	13, 242, 376, 676, 731, 829, 901
NlaIV	GGNNCC	5 cut(s)	148, 295, 518, 588, 942
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	731
PaeR7I	CTCGAG	1 cut(s)	981
PagI	TCATGA	1 cut(s)	238
PceI	AGGCCT	2 cut(s)	359, 460
PciSI	GCTCTTC	3 cut(s)	548, 598, 692
PfeI	GAWTC	4 cut(s)	412, 470, 718, 986
PkrI	GCNGC	1 cut(s)	919
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	940
PsiI	TTATAA	1 cut(s)	734
Psp5II	RGGWCCY	1 cut(s)	940
Psp6I	CCWGG	5 cut(s)	109, 443, 691, 740, 964
PspGI	CCWGG	5 cut(s)	109, 443, 691, 740, 964
PspN4I	GGNNCC	5 cut(s)	148, 295, 518, 588, 942
PspPI	GGNCC	4 cut(s)	503, 586, 669, 940
PspPPI	RGGWCCY	1 cut(s)	940
PsrI	GAACNNNNNNTAC	2 cut(s)	346, 378
PstI	CTGCAG	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	2 cut(s)	749, 849
RsaNI	GTAC	2 cut(s)	748, 848
RseI	CAYNNNNRTG	3 cut(s)	237, 420, 726
SapI	GCTCTTC	3 cut(s)	548, 598, 692
SaqAI	TTAA	2 cut(s)	576, 1006
SatI	GCNGC	1 cut(s)	918
Sau3AI	GATC	3 cut(s)	175, 545, 594
Sau96I	GGNCC	4 cut(s)	503, 586, 669, 940
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	5 cut(s)	111, 445, 693, 742, 966
SduI	GDGCHC	1 cut(s)	149
SexAI	ACCWGGT	1 cut(s)	109
SfcI	CTRYAG	2 cut(s)	462, 559
Sfr274I	CTCGAG	1 cut(s)	981
SinI	GGWCC	3 cut(s)	503, 586, 940
SlaI	CTCGAG	1 cut(s)	981
SmiMI	CAYNNNNRTG	3 cut(s)	237, 420, 726
SmlI	CTYRAG	3 cut(s)	64, 479, 981
SmoI	CTYRAG	3 cut(s)	64, 479, 981
Sse9I	AATT	5 cut(s)	511, 829, 868, 886, 956
SseBI	AGGCCT	2 cut(s)	359, 460
SsiI	CCGC	4 cut(s)	281, 345, 351, 527
SspMI	CTAG	3 cut(s)	30, 179, 681
StuI	AGGCCT	2 cut(s)	359, 460
StyD4I	CCNGG	5 cut(s)	109, 443, 691, 740, 964
StyI	CCWWGG	1 cut(s)	590
TaaI	ACNGT	2 cut(s)	438, 759
TaqI	TCGA	1 cut(s)	982
TasI	AATT	5 cut(s)	511, 829, 868, 886, 956
TatI	WGTACW	1 cut(s)	747
TfiI	GAWTC	4 cut(s)	412, 470, 718, 986
Tru1I	TTAA	2 cut(s)	576, 1006
Tru9I	TTAA	2 cut(s)	576, 1006
TscAI	CASTG	2 cut(s)	619, 769
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	917
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	5 cut(s)	17, 255, 425, 798, 842
TspRI	CASTG	2 cut(s)	619, 769
VpaK11BI	GGWCC	3 cut(s)	503, 586, 940
XapI	RAATTY	1 cut(s)	829
XceI	RCATGY	1 cut(s)	731
XhoI	CTCGAG	1 cut(s)	981
XmiI	GTMKAC	2 cut(s)	562, 798
XspI	CTAG	3 cut(s)	30, 179, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.