AT1G26820

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013881
Physical Location & Seq
Reverse (-)
9292446 .. 9293862
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26820.1

Sequence Viewer

Length: 669 bp
ATGAAATTCTTCATTTTTATTCTAGCGTTACAACAACTCTACGTACAAAGTTTCGCCCAAGATTTCGATTTCTTCTACTTCGTTTTACAGTGGCCTGGAGCGTATTGTGATTCAAGACATAGTTGTTGCTATCCACAAACCGGTAAACCAGCTGCAGATTTTGGAATTCACGGTCTTTGGCCTAACTACAAAACCGGTGGATGGCCGCAAAATTGTAATCCTGACAGTCGATTTGATGATTTACGGGTTTCTGATCTGATGAGCGATTTACAAAGAGAATGGCCAACGTTGTCGTGTCCGAGCAATGATGGTATGAAGTTTTGGACACATGAGTGGGAGAAACACGGTACGTGCGCTGAGTCCGAGCTTGACCAACACGATTACTTCGAAGCTGGTCTCAAGCTCAAACAGAAAGCTAATCTCCTTCATGCCCTTACCAATGCTGGGATCAAACCGGATGATAAATTTTATGAAATGAAAGATATTGAGAATACGATCAAACAAGTAGTTGGGTTTGCTCCGGGCATTGAATGTAACAAAGATTCGTCACATAATAGCCAACTCTATCAGATTTATTTATGTGTTGACACTTCGGCCTCCAAATTCATCAACTGTCCTGTTATGCCGCATGGTCGATGCGACTCTCGAGTTCAATTTCCCAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

222

Amino Acids

25.63

Weight (kDa)

5.71

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 22 - 205 4.2e-63 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14220 AT1G26820
fragaria_vesca FvH4_4g31290
malus_domestica MD13G1071500.v1.1
prunus_persica Prupe.1G275400_v2.0.a1
pyrus_communis pycom13g06410
rosa_chinensis RchiOBHm_Chr4g0439731
rosa_laevigata RLG00000006241
rosa_multiflora Rmu_sc0010226.1_g000016 Rmu_ssc0000029.1_g000011
rosa_roxburghii Rroxscaffold_5G00380670
rosa_rugosa Rorug04G0321100
rosa_samantha Rh4AG372100 Rh4BG384200 Rh4CG398900 Rh4DG378600
rosa_wichuraiana Rw4G031770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 206, 626
AclI AACGTT 1 cut(s) 287
AclWI GGATC 1 cut(s) 455
AcoI YGGCCR 2 cut(s) 203, 281
AcsI RAATTY 4 cut(s) 5, 165, 464, 602
AfaI GTAC 2 cut(s) 45, 349
AfiI CCNNNNNNNGG 3 cut(s) 140, 201, 444
AgeI ACCGGT 2 cut(s) 140, 194
AgsI TTSAA 3 cut(s) 114, 530, 653
AjnI CCWGG 1 cut(s) 94
AleI CACNNNNGTG 1 cut(s) 331
AluBI AGCT 5 cut(s) 152, 367, 392, 403, 416
AluI AGCT 5 cut(s) 152, 367, 392, 403, 416
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 5 cut(s) 92, 179, 203, 281, 594
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 4 cut(s) 5, 165, 464, 602
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AsiGI ACCGGT 2 cut(s) 140, 194
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 356
AsuC2I CCSGG 1 cut(s) 522
AsuII TTCGAA 1 cut(s) 387
AvaI CYCGRG 1 cut(s) 645
BalI TGGCCA 1 cut(s) 283
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 195, 302
BciT130I CCWGG 1 cut(s) 96
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 3 cut(s) 153, 206, 626
BlsI GCNGC 3 cut(s) 154, 207, 627
Bme1390I CCNGG 2 cut(s) 96, 522
BmeT110I CYCGRG 1 cut(s) 645
BmrFI CCNGG 2 cut(s) 96, 522
BmsI GCATC 1 cut(s) 626
BpmI CTGGAG 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 522
BsaAI YACGTR 2 cut(s) 43, 351
BsaI GGTCTC 1 cut(s) 401
BsaWI WCCGGW 3 cut(s) 140, 194, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 201, 444
Bse118I RCCGGY 2 cut(s) 140, 194
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 206, 463
BseLI CCNNNNNNNGG 3 cut(s) 140, 201, 444
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 443
BshFI GGCC 5 cut(s) 94, 181, 205, 283, 596
BshTI ACCGGT 2 cut(s) 140, 194
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 4 cut(s) 141, 195, 455, 521
BslI CCNNNNNNNGG 3 cut(s) 140, 201, 444
BsmAI GTCTC 1 cut(s) 401
BsnI GGCC 5 cut(s) 94, 181, 205, 283, 596
Bso31I GGTCTC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 645
Bsp119I TTCGAA 1 cut(s) 387
Bsp143I GATC 3 cut(s) 253, 447, 495
BspACI CCGC 2 cut(s) 206, 626
BspANI GGCC 5 cut(s) 94, 181, 205, 283, 596
BspCNI CTCAG 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 455
BspT104I TTCGAA 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 2 cut(s) 140, 194
BssAI RCCGGY 2 cut(s) 140, 194
BssMI GATC 3 cut(s) 253, 447, 495
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 5 cut(s) 90, 173, 227, 347, 614
BstBAI YACGTR 2 cut(s) 43, 351
BstBI TTCGAA 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 206, 463
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 3 cut(s) 256, 450, 498
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 3 cut(s) 253, 447, 495
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 2 cut(s) 94, 520
BstSFI CTRYAG 1 cut(s) 153
BstSNI TACGTA 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 5 cut(s) 94, 181, 205, 283, 596
BtsCI GGATG 2 cut(s) 206, 463
BtsIMutI CAGTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 356
Cfr10I RCCGGY 2 cut(s) 140, 194
Csp6I GTAC 2 cut(s) 44, 348
CspAI ACCGGT 2 cut(s) 140, 194
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 3 cut(s) 329, 428, 629
CviQI GTAC 2 cut(s) 44, 348
DdeI CTNAG 1 cut(s) 357
DpnI GATC 3 cut(s) 255, 449, 497
DpnII GATC 3 cut(s) 253, 447, 495
EaeI YGGCCR 2 cut(s) 203, 281
Eco105I TACGTA 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 645
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 94
FaeI CATG 3 cut(s) 332, 431, 632
FaiI YATR 9 cut(s) 120, 314, 330, 429, 471, 552, 580, 623, 630
FatI CATG 3 cut(s) 328, 427, 628
Fnu4HI GCNGC 3 cut(s) 153, 206, 626
FokI GGATG 2 cut(s) 213, 470
Fsp4HI GCNGC 3 cut(s) 153, 206, 626
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 355
GluI GCNGC 3 cut(s) 153, 206, 626
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 5 cut(s) 94, 181, 205, 283, 596
HapII CCGG 4 cut(s) 141, 195, 455, 521
HhaI GCGC 1 cut(s) 356
Hin1II CATG 3 cut(s) 332, 431, 632
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 4 cut(s) 110, 359, 542, 641
HpaII CCGG 4 cut(s) 141, 195, 455, 521
Hpy166II GTNNAC 2 cut(s) 146, 586
Hpy188I TCNGA 5 cut(s) 253, 258, 300, 364, 570
Hpy188III TCNNGA 3 cut(s) 114, 221, 645
Hpy8I GTNNAC 2 cut(s) 146, 586
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 5 cut(s) 90, 173, 227, 347, 614
HpyCH4IV ACGT 3 cut(s) 42, 287, 350
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 3 cut(s) 42, 287, 350
Hsp92II CATG 3 cut(s) 332, 431, 632
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 3 cut(s) 253, 447, 495
LmnI GCTCC 2 cut(s) 98, 523
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 626
MaeI CTAG 1 cut(s) 23
MaeII ACGT 3 cut(s) 42, 287, 350
MaeIII GTNAC 3 cut(s) 27, 533, 546
MalI GATC 3 cut(s) 255, 449, 497
MboI GATC 3 cut(s) 253, 447, 495
MboII GAAGA 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 283
MluCI AATT 6 cut(s) 5, 165, 211, 464, 602, 653
MluNI TGGCCA 1 cut(s) 283
MlyI GAGTC 2 cut(s) 368, 635
MnlI CCTC 1 cut(s) 607
Mox20I TGGCCA 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 283
MslI CAYNNNNRTG 1 cut(s) 331
Msp20I TGGCCA 1 cut(s) 283
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 4 cut(s) 141, 195, 455, 521
MspR9I CCNGG 2 cut(s) 96, 522
MvaI CCWGG 1 cut(s) 96
NciI CCSGG 1 cut(s) 522
NdeII GATC 3 cut(s) 253, 447, 495
NlaIII CATG 3 cut(s) 332, 431, 632
NmuCI GTSAC 1 cut(s) 546
NspV TTCGAA 1 cut(s) 387
OliI CACNNNNGTG 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 110, 542
PinAI ACCGGT 2 cut(s) 140, 194
PkrI GCNGC 3 cut(s) 154, 207, 627
PleI GAGTC 2 cut(s) 367, 635
PpsI GAGTC 2 cut(s) 367, 635
Ppu21I YACGTR 2 cut(s) 43, 351
Psp1406I AACGTT 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 1 cut(s) 94
PstI CTGCAG 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 45, 349
RsaNI GTAC 2 cut(s) 44, 348
RseI CAYNNNNRTG 1 cut(s) 331
SatI GCNGC 3 cut(s) 153, 206, 626
Sau3AI GATC 3 cut(s) 253, 447, 495
SchI GAGTC 2 cut(s) 368, 635
ScrFI CCNGG 2 cut(s) 96, 522
SetI ASST 8 cut(s) 45, 154, 290, 353, 369, 394, 405, 418
SfaNI GCATC 1 cut(s) 626
SfcI CTRYAG 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 645
SfuI TTCGAA 1 cut(s) 387
SlaI CTCGAG 1 cut(s) 645
SmiMI CAYNNNNRTG 1 cut(s) 331
SmlI CTYRAG 2 cut(s) 398, 645
SmoI CTYRAG 2 cut(s) 398, 645
SnaBI TACGTA 1 cut(s) 43
Sse9I AATT 6 cut(s) 5, 165, 211, 464, 602, 653
SsiI CCGC 2 cut(s) 206, 626
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 94, 520
TaaI ACNGT 5 cut(s) 90, 173, 227, 347, 614
TaiI ACGT 3 cut(s) 45, 290, 353
TaqI TCGA 5 cut(s) 66, 229, 387, 634, 646
TasI AATT 6 cut(s) 5, 165, 211, 464, 602, 653
TauI GCSGC 2 cut(s) 208, 628
TfiI GAWTC 2 cut(s) 110, 542
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 6 cut(s) 17, 329, 416, 486, 491, 595
TspRI CASTG 1 cut(s) 95
XapI RAATTY 4 cut(s) 5, 165, 464, 602
XhoI CTCGAG 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.