Prupe.1G275400_v2.0.a1

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013881
Physical Location & Seq
Forward (+)
28108986 .. 28110810
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G275400.1

Sequence Viewer

Length: 684 bp
ATGAGATTCAGCACTAGTTTGATCTTGATCAAGCTTTTTGTAATTCAGTACCTCTCAGTTCTTTGCGTTTCGCAGGACTTTGATTTCTTCTACTTTGTTCAACAGTGGCCAGGAGCATACTGTGACACCAAGCACACTTGCTGTTATCCAAAGTCGGGAAAGCCTTCAGCAGATTTTGGCATTCATGGGCTTTGGCCTAATTACAAGGATGGCTCCTACCCATCTAACTGTGATCCCGATAGTGTTTTCGACAAATCTGAAATCTCAGAGCTAATGAGCAACCTGGAAAAGAACTGGCCGTCACTAAGCTGCCCAAGCAGCAATGGGTTCAGGTTCTGGTCCCATGAATGGGAAAAGCACGGTACATGCTCAGAGTCAGAGCTTGACCAGAAAGATTACTTTGAAGCGGCTCTCAAGCTCAAGCAAAAAGTTAACCTTCTGCAAATCCTCAAAACAGCTGGGATCGTACCAGATGATGGGATGTACAGCTTGGAGAGCATAAAAGAAGCCATAAAAGAGGGTGCTGGGTACACCCCAGGGATAGAGTGCAACAAAGATTCGGCGGGAAACAGCCAACTGTACCAGGTTTACCTGTGCGTCGACACTTCCGGCCAAGACATCATTGAATGCCCTGTGCTTCCTAAAGGACGATGTGCTTCAGATGTTCAATTCGCTAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

228

Amino Acids

25.57

Weight (kDa)

5.01

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14220 AT1G26820
fragaria_vesca FvH4_4g31290
malus_domestica MD13G1071500.v1.1
prunus_persica Prupe.1G275400_v2.0.a1
pyrus_communis pycom13g06410
rosa_chinensis RchiOBHm_Chr4g0439731
rosa_laevigata RLG00000006241
rosa_multiflora Rmu_sc0010226.1_g000016 Rmu_ssc0000029.1_g000011
rosa_roxburghii Rroxscaffold_5G00380670
rosa_rugosa Rorug04G0321100
rosa_samantha Rh4AG372100 Rh4BG384200 Rh4CG398900 Rh4DG378600
rosa_wichuraiana Rw4G031770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 1 cut(s) 600
AciI CCGC 2 cut(s) 407, 563
AclWI GGATC 2 cut(s) 227, 470
AcoI YGGCCR 3 cut(s) 107, 296, 610
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 2 cut(s) 150, 642
AfaI GTAC 6 cut(s) 50, 364, 468, 485, 530, 581
AfiI CCNNNNNNNGG 4 cut(s) 155, 348, 349, 476
AgsI TTSAA 4 cut(s) 101, 404, 626, 668
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 4 cut(s) 109, 282, 535, 582
AluBI AGCT 7 cut(s) 34, 271, 309, 382, 418, 458, 489
AluI AGCT 7 cut(s) 34, 271, 309, 382, 418, 458, 489
AlwI GGATC 2 cut(s) 227, 470
AlwNI CAGNNNCTG 1 cut(s) 336
AoxI GGCC 4 cut(s) 107, 194, 296, 610
ApeKI GCWGC 2 cut(s) 309, 318
ApoI RAATTY 1 cut(s) 677
Asp700I GAANNNNTTC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 339
AvaII GGWCC 1 cut(s) 339
BalI TGGCCA 1 cut(s) 109
BbvI GCAGC 2 cut(s) 296, 330
BccI CCATC 3 cut(s) 203, 229, 470
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 4 cut(s) 111, 284, 537, 584
BclI TGATCA 1 cut(s) 27
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 1 cut(s) 15
BisI GCNGC 3 cut(s) 310, 319, 408
BlsI GCNGC 3 cut(s) 311, 320, 409
Bme1390I CCNGG 4 cut(s) 111, 284, 537, 584
Bme18I GGWCC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 2 cut(s) 214, 341
BmrFI CCNGG 4 cut(s) 111, 284, 537, 584
BpuEI CTTGAG 2 cut(s) 398, 404
BsaBI GATNNNNATC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 535, 536
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 348, 349, 476
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 4 cut(s) 111, 284, 537, 584
BseDI CCNNGG 2 cut(s) 535, 536
BseGI GGATG 2 cut(s) 214, 486
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 4 cut(s) 155, 348, 349, 476
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 3 cut(s) 69, 279, 384
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 296, 330
BseYI CCCAGC 2 cut(s) 458, 524
BshFI GGCC 4 cut(s) 109, 196, 298, 612
BsiSI CCGG 1 cut(s) 609
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 4 cut(s) 155, 348, 349, 476
BsmFI GGGAC 1 cut(s) 325
BsmI GAATGC 2 cut(s) 180, 632
BsnI GGCC 4 cut(s) 109, 196, 298, 612
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 4 cut(s) 21, 27, 232, 462
BspACI CCGC 2 cut(s) 407, 563
BspANI GGCC 4 cut(s) 109, 196, 298, 612
BspCNI CTCAG 3 cut(s) 68, 278, 383
BspLI GGNNCC 2 cut(s) 214, 341
BspPI GGATC 2 cut(s) 227, 470
BsrDI GCAATG 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 535, 536
BssMI GATC 4 cut(s) 21, 27, 232, 462
Bst2UI CCWGG 4 cut(s) 111, 284, 537, 584
Bst4CI ACNGT 5 cut(s) 105, 122, 230, 362, 579
BstAUI TGTACA 1 cut(s) 483
BstDEI CTNAG 4 cut(s) 55, 265, 305, 370
BstF5I GGATG 2 cut(s) 214, 486
BstKTI GATC 4 cut(s) 24, 30, 235, 465
BstMBI GATC 4 cut(s) 21, 27, 232, 462
BstMWI GCNNNNNNNGC 3 cut(s) 315, 318, 495
BstNI CCWGG 4 cut(s) 111, 284, 537, 584
BstNSI RCATGY 1 cut(s) 369
BstSCI CCNGG 4 cut(s) 109, 282, 535, 582
BstV1I GCAGC 2 cut(s) 296, 330
BsuRI GGCC 4 cut(s) 109, 196, 298, 612
BtsCI GGATG 2 cut(s) 214, 486
BtsIMutI CAGTG 1 cut(s) 110
CaiI CAGNNNCTG 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 339
CseI GACGC 1 cut(s) 586
CsiI ACCWGGT 1 cut(s) 582
Csp6I GTAC 6 cut(s) 49, 363, 467, 484, 529, 580
CviAII CATG 3 cut(s) 185, 344, 366
CviQI GTAC 6 cut(s) 49, 363, 467, 484, 529, 580
DdeI CTNAG 4 cut(s) 55, 265, 305, 370
DpnI GATC 4 cut(s) 23, 29, 234, 464
DpnII GATC 4 cut(s) 21, 27, 232, 462
EaeI YGGCCR 3 cut(s) 107, 296, 610
Eco47I GGWCC 1 cut(s) 339
Eco57I CTGAAG 2 cut(s) 150, 642
EcoRII CCWGG 4 cut(s) 109, 282, 535, 582
FaeI CATG 3 cut(s) 188, 347, 369
FaiI YATR 6 cut(s) 118, 186, 345, 367, 500, 512
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 325
FatI CATG 3 cut(s) 184, 343, 365
FauI CCCGC 1 cut(s) 556
FbaI TGATCA 1 cut(s) 27
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 3 cut(s) 310, 319, 408
FokI GGATG 2 cut(s) 221, 493
Fsp4HI GCNGC 3 cut(s) 310, 319, 408
FspBI CTAG 1 cut(s) 15
GluI GCNGC 3 cut(s) 310, 319, 408
GsaI CCCAGC 2 cut(s) 462, 528
HaeIII GGCC 4 cut(s) 109, 196, 298, 612
HapII CCGG 1 cut(s) 609
HgaI GACGC 1 cut(s) 586
Hin1II CATG 3 cut(s) 188, 347, 369
HincII GTYRAC 2 cut(s) 433, 601
HindII GTYRAC 2 cut(s) 433, 601
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 3 cut(s) 6, 374, 557
HpaI GTTAAC 1 cut(s) 433
HpaII CCGG 1 cut(s) 609
Hpy166II GTNNAC 4 cut(s) 433, 531, 589, 601
Hpy188I TCNGA 5 cut(s) 259, 268, 373, 379, 661
Hpy188III TCNNGA 3 cut(s) 25, 156, 236
Hpy8I GTNNAC 4 cut(s) 433, 531, 589, 601
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 2 cut(s) 174, 446
HpyCH4III ACNGT 5 cut(s) 105, 122, 230, 362, 579
HpyCH4V TGCA 2 cut(s) 442, 549
HpyF10VI GCNNNNNNNGC 3 cut(s) 315, 318, 495
HpyF3I CTNAG 4 cut(s) 55, 265, 305, 370
Hsp92II CATG 3 cut(s) 188, 347, 369
Ksp22I TGATCA 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 433
Kzo9I GATC 4 cut(s) 21, 27, 232, 462
LmnI GCTCC 2 cut(s) 113, 218
Lsp1109I GCAGC 2 cut(s) 296, 330
MabI ACCWGGT 1 cut(s) 582
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 122, 300
MalI GATC 4 cut(s) 23, 29, 234, 464
MboI GATC 4 cut(s) 21, 27, 232, 462
MboII GAAGA 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 109
MluCI AATT 4 cut(s) 42, 199, 668, 677
MluNI TGGCCA 1 cut(s) 109
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 3 cut(s) 62, 458, 511
Mox20I TGGCCA 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 163
MscI TGGCCA 1 cut(s) 109
MseI TTAA 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 109
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 609
MspR9I CCNGG 4 cut(s) 111, 284, 537, 584
Mva1269I GAATGC 2 cut(s) 180, 632
MvaI CCWGG 4 cut(s) 111, 284, 537, 584
MwoI GCNNNNNNNGC 3 cut(s) 315, 318, 495
NdeII GATC 4 cut(s) 21, 27, 232, 462
NlaIII CATG 3 cut(s) 188, 347, 369
NlaIV GGNNCC 2 cut(s) 214, 341
NmuCI GTSAC 2 cut(s) 122, 300
NspI RCATGY 1 cut(s) 369
PasI CCCWGGG 1 cut(s) 536
PctI GAATGC 2 cut(s) 180, 632
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 6, 557
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 3 cut(s) 311, 320, 409
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 4 cut(s) 109, 282, 535, 582
PspFI CCCAGC 2 cut(s) 458, 524
PspGI CCWGG 4 cut(s) 109, 282, 535, 582
PspN4I GGNNCC 2 cut(s) 214, 341
PspPI GGNCC 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 6 cut(s) 50, 364, 468, 485, 530, 581
RsaNI GTAC 6 cut(s) 49, 363, 467, 484, 529, 580
SalI GTCGAC 1 cut(s) 599
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 3 cut(s) 310, 319, 408
Sau3AI GATC 4 cut(s) 21, 27, 232, 462
Sau96I GGNCC 1 cut(s) 339
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 4 cut(s) 111, 284, 537, 584
SexAI ACCWGGT 1 cut(s) 582
SinI GGWCC 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 413, 419
SmoI CTYRAG 2 cut(s) 413, 419
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 4 cut(s) 42, 199, 668, 677
SsiI CCGC 2 cut(s) 407, 563
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 4 cut(s) 109, 282, 535, 582
TaaI ACNGT 5 cut(s) 105, 122, 230, 362, 579
TaqI TCGA 2 cut(s) 249, 600
TasI AATT 4 cut(s) 42, 199, 668, 677
TatI WGTACW 1 cut(s) 483
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 2 cut(s) 6, 557
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 110
TseFI GTSAC 2 cut(s) 122, 300
TseI GCWGC 2 cut(s) 309, 318
Tsp45I GTSAC 2 cut(s) 122, 300
TspDTI ATGAA 2 cut(s) 173, 360
TspRI CASTG 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 1 cut(s) 677
XceI RCATGY 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 600
XmnI GAANNNNTTC 1 cut(s) 163
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.