Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009409

Physical Location & Seq

Genomic Coordinates Forward (+)

9343112 .. 9345323

Gene Structure 2212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGAATCACGAGAAACTTGATCCTGGGTTTGGCTTGTTTAGCCTTTGTCTCCATTGCTAAAGCTCTGCCTCATGAACCAGAACTTGGCTCGGCTCGTGTCGTCTTCCAGACTAGTTATGGAGATATCGAATTTGGGTTCTATCCCACTGTGGCACCCAAGACAGTGGATCACATCTTCAAGCTTGTTCGTTTAGGAGGATACAACACTAATCATTTCTTCAGGGTTGATAAAGGTTTTGTTGCTCAAGTTGCGGATGTGGCGAGTGGACGATCAGCTCCAATGAATGAGGAGCAAAGGAAAGAAGCTGAGAAGAAAATTGTGGGAGAGTTCAGTGATGTTAAGCATGTCAGAGGTACTCTTTCCATGGGAAGATATGACGATCCAAACAGTGCACAATCTTCATTTTCGATGCTTCTTGGCAATGCTCCTCATCTTGATCGCCAGTATGCTGTGTTTGGTAAAGTTACTAAAGGAGATGAAACATTGAGTAAGCTAGAAGAAGTTCCCACTCGCCGCGAGGGGATTTTTGTTATGCCGACGGAGCGGATCACGATTTTGTCGACATACTATTACGACACTAAAATGGAGAGCTGTGAAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTTTTGTGGAGGTCGAAAGACAGAGAATGAAGTGCTTCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

226

Amino Acids

25.51

Weight (kDa)

8.36

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	34 - 189	9.9e-34	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26940 AT1G26940
fragaria_vesca	FvH4_4g31590 FvH4_4g31590 FvH4_4g31590
malus_domestica	MD13G1074200.v1.1 MD16G1075600.v1.1
prunus_persica	Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1
pyrus_communis	pycom13g06620 pycom16g06550
rosa_chinensis	RchiOBHm_Chr4g0440101
rosa_laevigata	RLG00000006205
rosa_multiflora	Rmu_sc0001685.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381040
rosa_rugosa	Rorug04G0324400
rosa_samantha	Rh4AG375100 Rh4BG387400 Rh4CG401900 Rh4DG381700
rosa_wichuraiana	Rw4G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	547
AccI	GTMKAC	1 cut(s)	563
AccII	CGCG	1 cut(s)	519
AciI	CCGC	3 cut(s)	254, 517, 547
AclWI	GGATC	4 cut(s)	16, 177, 377, 557
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	205
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	31, 86
AgsI	TTSAA	2 cut(s)	181, 632
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	6 cut(s)	65, 184, 278, 308, 496, 594
AluI	AGCT	6 cut(s)	65, 184, 278, 308, 496, 594
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	55
Alw44I	GTGCAC	1 cut(s)	393
AlwI	GGATC	4 cut(s)	16, 177, 377, 557
ApaLI	GTGCAC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	131
Asp700I	GAANNNNTTC	2 cut(s)	504, 671
BaeGI	GKGCMC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	154
BauI	CACGAG	2 cut(s)	10, 96
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	55
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	2 cut(s)	114, 497
BfuI	GTATCC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	1 cut(s)	517
BlsI	GCNGC	1 cut(s)	518
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	402, 644
BpiI	GAAGAC	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	25, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 86
Bse1I	ACTGG	1 cut(s)	445
Bse3DI	GCAATG	2 cut(s)	54, 430
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	25, 366
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	31, 86
BseMI	GCAATG	2 cut(s)	54, 430
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	2 cut(s)	305, 420
BseSI	GKGCMC	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	519
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	397
BslI	CCNNNNNNNGG	2 cut(s)	31, 86
BsmAI	GTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	7 cut(s)	21, 169, 272, 382, 439, 549, 608
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	3 cut(s)	254, 517, 547
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	4 cut(s)	16, 177, 377, 557
BspT107I	GGYRCC	1 cut(s)	154
BsrBI	CCGCTC	1 cut(s)	547
BsrDI	GCAATG	2 cut(s)	54, 430
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	25, 366
BssMI	GATC	7 cut(s)	21, 169, 272, 382, 439, 549, 608
BssSI	CACGAG	2 cut(s)	10, 96
BssT1I	CCWWGG	1 cut(s)	366
Bst2BI	CACGAG	2 cut(s)	10, 96
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	151, 166, 392
Bst6I	CTCTTC	1 cut(s)	597
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	519
BstKTI	GATC	7 cut(s)	24, 172, 275, 385, 442, 552, 611
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	7 cut(s)	21, 169, 272, 382, 439, 549, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 251, 260, 544
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	397
BstUI	CGCG	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	608
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	4 cut(s)	147, 171, 340, 397
CciI	TCATGA	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	3 cut(s)	74, 347, 367
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	7 cut(s)	23, 171, 274, 384, 441, 551, 610
DpnII	GATC	7 cut(s)	21, 169, 272, 382, 439, 549, 608
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	77, 350, 370
FaiI	YATR	8 cut(s)	75, 120, 348, 368, 378, 450, 536, 568
FatI	CATG	3 cut(s)	73, 346, 366
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	1 cut(s)	517
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	517
FspBI	CTAG	2 cut(s)	114, 497
GluI	GCNGC	1 cut(s)	517
Hin1II	CATG	3 cut(s)	77, 350, 370
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	1 cut(s)	6
Hpy166II	GTNNAC	3 cut(s)	269, 395, 564
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	6 cut(s)	10, 74, 109, 437, 553, 616
Hpy8I	GTNNAC	3 cut(s)	269, 395, 564
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	1 cut(s)	618
HpyCH4III	ACNGT	3 cut(s)	151, 166, 392
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 251, 260, 544
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	77, 350, 370
Kzo9I	GATC	7 cut(s)	21, 169, 272, 382, 439, 549, 608
LmnI	GCTCC	4 cut(s)	283, 292, 433, 544
LpnPI	CCDG	7 cut(s)	11, 38, 93, 122, 208, 458, 629
LweI	GCATC	2 cut(s)	402, 644
MaeI	CTAG	2 cut(s)	114, 497
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	7 cut(s)	23, 171, 274, 384, 441, 551, 610
MbiI	CCGCTC	1 cut(s)	547
MboI	GATC	7 cut(s)	21, 169, 272, 382, 439, 549, 608
MboII	GAAGA	9 cut(s)	97, 169, 211, 325, 384, 393, 512, 611, 614
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	131, 318
MnlI	CCTC	7 cut(s)	81, 191, 283, 347, 441, 514, 640
MroXI	GAANNNNTTC	2 cut(s)	504, 671
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	4 cut(s)	41, 251, 260, 544
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	7 cut(s)	21, 169, 272, 382, 439, 549, 608
NlaIII	CATG	3 cut(s)	77, 350, 370
NlaIV	GGNNCC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	71
NspI	RCATGY	1 cut(s)	350
PagI	TCATGA	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	560
PdmI	GAANNNNTTC	2 cut(s)	504, 671
PfeI	GAWTC	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	584
SalI	GTCGAC	1 cut(s)	562
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	517
Sau3AI	GATC	7 cut(s)	21, 169, 272, 382, 439, 549, 608
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	9 cut(s)	67, 186, 238, 280, 310, 358, 498, 596, 651
SfaNI	GCATC	2 cut(s)	402, 644
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	2 cut(s)	131, 318
SsiI	CCGC	3 cut(s)	254, 517, 547
SspMI	CTAG	2 cut(s)	114, 497
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	3 cut(s)	151, 166, 392
TaqI	TCGA	4 cut(s)	129, 410, 563, 651
TasI	AATT	2 cut(s)	131, 318
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	4 cut(s)	154, 171, 340, 397
TspDTI	ATGAA	5 cut(s)	90, 299, 393, 495, 680
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	4 cut(s)	154, 171, 340, 397
Van91I	CCANNNNNTGG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	393
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	563
XmnI	GAANNNNTTC	2 cut(s)	504, 671
XspI	CTAG	2 cut(s)	114, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.