Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009409

Physical Location & Seq

Genomic Coordinates Forward (+)

68233107 .. 68238106

Gene Structure 5000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG375100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTGGAGCCGAAAGTCAGCTCTGATCGGAGTTTTGGGTTGCTTTTGTATCTACACAACATTTCTTACCAGCGTCATAGCTTCGTCTCAGGAATCTCTGCTCGGATCCGCCCGCGTCGTTTTTCAGACCAATTTTGGGGACATTGAATTTGGGTTCTTCCCAGGAGTTGCACCCAAAACCGTTGACCACATTTTCAAGCTGGTCCGTCTAGGTTGCTATAACACCAACCACTTCTTTAGGGTCGACAAGGGTTTTGTGGCCCAAGTCGCCGACGTGGTCAGCGGAAGATCGGCCCCGATGAACGAGCAGCAAAGAGCAGAAGCGGAGAAGACCGTGGTGGGTGAATTCAGTGATGTGAAACATGTCAGAGGCATTCTATCAATGGGAAGATATGAAGACCCAAATAGTGCGGCTTCCTCATTTTCGATGCTTCTTGGAGATGCTCCTCATCTTGATGGTCAGTACGCAATATTTGGTAAAGTGACTAAAGGTGATGAGACTTTGAGAAAGCTTGAGGAAGTCCCTACTCGTCGCGAGGGAATTTTTGTAATGGTATGCTTATTGTTCTGCATTCACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

193

Amino Acids

21.38

Weight (kDa)

6.95

Isoelectric Point (pI)

26.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	39 - 178	1.5e-32	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26940 AT1G26940
fragaria_vesca	FvH4_4g31590 FvH4_4g31590 FvH4_4g31590
malus_domestica	MD13G1074200.v1.1 MD16G1075600.v1.1
prunus_persica	Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1
pyrus_communis	pycom13g06620 pycom16g06550
rosa_chinensis	RchiOBHm_Chr4g0440101
rosa_laevigata	RLG00000006205
rosa_multiflora	Rmu_sc0001685.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381040
rosa_rugosa	Rorug04G0324400
rosa_samantha	Rh4AG375100 Rh4BG387400 Rh4CG401900 Rh4DG381700
rosa_wichuraiana	Rw4G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	2 cut(s)	114, 534
AciI	CCGC	5 cut(s)	108, 112, 282, 323, 410
AclWI	GGATC	2 cut(s)	99, 112
AcsI	RAATTY	3 cut(s)	146, 344, 540
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	146, 196
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	4 cut(s)	20, 80, 199, 511
AluI	AGCT	4 cut(s)	20, 80, 199, 511
Alw26I	GTCTC	2 cut(s)	90, 491
AlwI	GGATC	2 cut(s)	99, 112
AoxI	GGCC	2 cut(s)	258, 291
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	3 cut(s)	146, 344, 540
ArsI	GACNNNNNNTTYG	4 cut(s)	131, 163, 236, 268
AspS9I	GGNCC	3 cut(s)	202, 259, 292
AsuHPI	GGTGA	2 cut(s)	353, 503
AvaII	GGWCC	1 cut(s)	202
BamHI	GGATCC	1 cut(s)	104
BbsI	GAAGAC	2 cut(s)	335, 402
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	90, 491
BfaI	CTAG	2 cut(s)	209, 580
BisI	GCNGC	2 cut(s)	308, 411
BlsI	GCNGC	2 cut(s)	309, 412
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	202
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	202, 259, 292
BmiI	GGNNCC	3 cut(s)	8, 106, 294
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	417, 430
BpiI	GAAGAC	2 cut(s)	335, 402
BpuEI	CTTGAG	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	160, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	160, 333
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	2 cut(s)	114, 534
BshFI	GGCC	2 cut(s)	260, 293
BslFI	GGGAC	2 cut(s)	152, 506
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	90, 491
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	152, 506
BsmI	GAATGC	2 cut(s)	372, 570
BsnI	GGCC	2 cut(s)	260, 293
Bsp143I	GATC	3 cut(s)	24, 104, 287
Bsp68I	TCGCGA	1 cut(s)	534
BspACI	CCGC	5 cut(s)	108, 112, 282, 323, 410
BspANI	GGCC	2 cut(s)	260, 293
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	2 cut(s)	114, 534
BspLI	GGNNCC	3 cut(s)	8, 106, 294
BspPI	GGATC	2 cut(s)	99, 112
BssECI	CCNNGG	2 cut(s)	160, 333
BssMI	GATC	3 cut(s)	24, 104, 287
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	181, 334
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	333
BstFNI	CGCG	2 cut(s)	114, 534
BstKTI	GATC	3 cut(s)	27, 107, 290
BstMAI	GTCTC	2 cut(s)	90, 491
BstMBI	GATC	3 cut(s)	24, 104, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	2 cut(s)	114, 534
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	2 cut(s)	335, 402
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	260, 293
BtgI	CCRYGG	1 cut(s)	333
BtrI	CACGTC	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	355
BtuMI	TCGCGA	1 cut(s)	534
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	202, 259, 292
CseI	GACGC	2 cut(s)	61, 103
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	8 cut(s)	9, 20, 80, 199, 260, 293, 413, 511
CviKI_1	RGCY	8 cut(s)	9, 20, 80, 199, 260, 293, 413, 511
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	3 cut(s)	26, 106, 289
DpnII	GATC	3 cut(s)	24, 104, 287
EciI	GGCGGA	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	365
FaiI	YATR	5 cut(s)	77, 219, 363, 393, 556
FaqI	GGGAC	2 cut(s)	152, 506
FatI	CATG	1 cut(s)	361
FauI	CCCGC	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	308, 411
Fsp4HI	GCNGC	2 cut(s)	308, 411
FspBI	CTAG	2 cut(s)	209, 580
GluI	GCNGC	2 cut(s)	308, 411
HaeIII	GGCC	2 cut(s)	260, 293
HgaI	GACGC	2 cut(s)	61, 103
Hin1II	CATG	1 cut(s)	365
HincII	GTYRAC	2 cut(s)	184, 244
HindII	GTYRAC	2 cut(s)	184, 244
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	2 cut(s)	353, 503
Hpy166II	GTNNAC	2 cut(s)	184, 244
Hpy188I	TCNGA	5 cut(s)	24, 29, 104, 126, 368
Hpy188III	TCNNGA	3 cut(s)	89, 452, 533
Hpy8I	GTNNAC	2 cut(s)	184, 244
Hpy99I	CGWCG	3 cut(s)	119, 275, 534
HpyCH4III	ACNGT	2 cut(s)	181, 334
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	170, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	24, 104, 287
LmnI	GCTCC	2 cut(s)	6, 448
LpnPI	CCDG	5 cut(s)	74, 82, 147, 174, 185
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	417, 430
MaeI	CTAG	2 cut(s)	209, 580
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	3 cut(s)	26, 106, 289
MboI	GATC	3 cut(s)	24, 104, 287
MboII	GAAGA	5 cut(s)	148, 297, 340, 399, 407
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	4 cut(s)	130, 146, 344, 540
MnlI	CCTC	5 cut(s)	362, 427, 456, 508, 529
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	162
Mva1269I	GAATGC	2 cut(s)	372, 570
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	2 cut(s)	114, 534
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	3 cut(s)	24, 104, 287
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	3 cut(s)	8, 106, 294
NmuCI	GTSAC	1 cut(s)	481
NruI	TCGCGA	1 cut(s)	534
NspI	RCATGY	1 cut(s)	365
PciI	ACATGT	1 cut(s)	361
PctI	GAATGC	2 cut(s)	372, 570
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	309, 412
PscI	ACATGT	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	8, 106, 294
PspPI	GGNCC	3 cut(s)	202, 259, 292
PsuI	RGATCY	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	275
RruI	TCGCGA	1 cut(s)	534
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	242
SatI	GCNGC	2 cut(s)	308, 411
Sau3AI	GATC	3 cut(s)	24, 104, 287
Sau96I	GGNCC	3 cut(s)	202, 259, 292
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	7 cut(s)	22, 82, 201, 214, 276, 493, 513
SfaNI	GCATC	2 cut(s)	417, 430
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	4 cut(s)	130, 146, 344, 540
SsiI	CCGC	5 cut(s)	108, 112, 282, 323, 410
SspI	AATATT	1 cut(s)	471
SspMI	CTAG	2 cut(s)	209, 580
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	181, 334
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	243, 425
TasI	AATT	4 cut(s)	130, 146, 344, 540
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	314, 408
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	3 cut(s)	146, 344, 540
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	2 cut(s)	209, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.