Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009409

Physical Location & Seq

Genomic Coordinates Forward (+)

5239114 .. 5242164

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1074200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCGTTGGACGGACGGCAGATTTGGTGGGAAAATGTTGAACCGCAAATCGGCACTGATCGGACTGATCAGTTGCTTTTACTTTCACTCCACATTTCTGACAAGTTTCGTCGCAGCTTCTTCTCCGGACCCGCTGCTCGGATCCGCCCGCGTCGTTTTTCAGACCAACTATGGCGACATCGAATTCGGGTTCTACCCGACCGTCGCGCCGAAGACGGTGGAGCACATTTTCAAGCTGGTGCGTCTCGGCGGCTACAACACCAACCACATCTTTAGGGTTGAGAAAGGGTTCGTCGCCCAAGTGGCCGACGTGGCCAGCGGAAGGTCGGCTCCGATGAACGAGGAACAGCGGAGAGAGGCGGAGAAGACGGTTGTCGGAGAGTTCAGTGCCGTTAAGCATGTCAGGGGCATTCTTTCCATGGGAAGATATGACGATCCGAACAGCGCCGGATCCTCCTTCTCAATGCTGCTTGGAGATTCCCCTCATCTTGATGGGAAGTATGCAATATTTGGGAAAGTTACCAAAGGTGATGAGACCTTGAGAGCGCTCGAGGAACTCCCTACACATCGGGAAGGGATTTTCGTAATGCCCACCGAGCGCATTACAATTCTGTCAACATACTACTATGACACCGAGATGGAGCATTGTGAACATGAGAGGTCTGTCATGAAGCAGAGGCTTGCTGCATCTGCTGTTGAAATCGAGAGACAGAGAATGAAATGTTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

244

Amino Acids

27.34

Weight (kDa)

7.76

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	51 - 206	1.7e-33	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26940 AT1G26940
fragaria_vesca	FvH4_4g31590 FvH4_4g31590 FvH4_4g31590
malus_domestica	MD13G1074200.v1.1 MD16G1075600.v1.1
prunus_persica	Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1
pyrus_communis	pycom13g06620 pycom16g06550
rosa_chinensis	RchiOBHm_Chr4g0440101
rosa_laevigata	RLG00000006205
rosa_multiflora	Rmu_sc0001685.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381040
rosa_rugosa	Rorug04G0324400
rosa_samantha	Rh4AG375100 Rh4BG387400 Rh4CG401900 Rh4DG381700
rosa_wichuraiana	Rw4G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	150, 206
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	8 cut(s)	43, 131, 144, 148, 249, 318, 349, 359
AclWI	GGATC	5 cut(s)	135, 148, 428, 444, 457
AcoI	YGGCCR	2 cut(s)	303, 312
AcsI	RAATTY	1 cut(s)	182
AfeI	AGCGCT	1 cut(s)	546
AfiI	CCNNNNNNNGG	3 cut(s)	49, 137, 321
AgsI	TTSAA	3 cut(s)	40, 232, 698
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	2 cut(s)	116, 235
AluI	AGCT	2 cut(s)	116, 235
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	248, 527, 700
AlwI	GGATC	5 cut(s)	135, 148, 428, 444, 457
Ama87I	CYCGRG	1 cut(s)	548
Aor13HI	TCCGGA	1 cut(s)	124
Aor51HI	AGCGCT	1 cut(s)	546
AoxI	GGCC	2 cut(s)	303, 312
ApeKI	GCWGC	4 cut(s)	113, 133, 466, 683
ApoI	RAATTY	1 cut(s)	182
ArsI	GACNNNNNNTTYG	3 cut(s)	37, 167, 199
Asp700I	GAANNNNTTC	2 cut(s)	287, 722
AspLEI	GCGC	4 cut(s)	208, 446, 547, 600
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	314
BamHI	GGATCC	2 cut(s)	140, 449
BbsI	GAAGAC	2 cut(s)	218, 371
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	4 cut(s)	120, 125, 453, 670
BccI	CCATC	2 cut(s)	485, 631
BceAI	ACGGC	2 cut(s)	31, 374
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	3 cut(s)	248, 527, 700
BfoI	RGCGCY	2 cut(s)	447, 548
BglI	GCCNNNNNGGC	2 cut(s)	302, 311
BisI	GCNGC	5 cut(s)	114, 134, 250, 467, 684
BlsI	GCNGC	5 cut(s)	115, 135, 251, 468, 685
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	4 cut(s)	129, 142, 330, 451
BmsI	GCATC	1 cut(s)	695
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	2 cut(s)	218, 371
BpuEI	CTTGAG	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 137, 321
BseAI	TCCGGA	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	417
BseLI	CCNNNNNNNGG	3 cut(s)	49, 137, 321
BseXI	GCAGC	4 cut(s)	120, 125, 453, 670
Bsh1236I	CGCG	2 cut(s)	150, 206
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	305, 314
BsiEI	CGRYCG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	125, 447
BslI	CCNNNNNNNGG	3 cut(s)	49, 137, 321
BsmAI	GTCTC	3 cut(s)	248, 527, 700
BsmBI	CGTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	305, 314
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	5 cut(s)	57, 66, 140, 433, 449
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	8 cut(s)	43, 131, 144, 148, 249, 318, 349, 359
BspANI	GGCC	2 cut(s)	305, 314
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	2 cut(s)	150, 206
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	4 cut(s)	129, 142, 330, 451
BspPI	GGATC	5 cut(s)	135, 148, 428, 444, 457
BspTNI	GGTCTC	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	5 cut(s)	57, 66, 140, 433, 449
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	202, 217, 370
BstC8I	GCNNGC	3 cut(s)	148, 316, 681
BstDSI	CCRYGG	1 cut(s)	417
BstFNI	CGCG	2 cut(s)	150, 206
BstH2I	RGCGCY	2 cut(s)	447, 548
BstHHI	GCGC	4 cut(s)	208, 446, 547, 600
BstKTI	GATC	5 cut(s)	60, 69, 143, 436, 452
BstMAI	GTCTC	3 cut(s)	248, 527, 700
BstMBI	GATC	5 cut(s)	57, 66, 140, 433, 449
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 311, 595, 689
BstNSI	RCATGY	1 cut(s)	401
BstPAI	GACNNNNGTC	1 cut(s)	371
BstUI	CGCG	2 cut(s)	150, 206
BstV1I	GCAGC	4 cut(s)	120, 125, 453, 670
BstV2I	GAAGAC	2 cut(s)	218, 371
BstX2I	RGATCY	2 cut(s)	140, 449
BstYI	RGATCY	2 cut(s)	140, 449
BsuRI	GGCC	2 cut(s)	305, 314
BtgI	CCRYGG	1 cut(s)	417
BtrI	CACGTC	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	53, 391
Cac8I	GCNNGC	3 cut(s)	148, 316, 681
CciI	TCATGA	1 cut(s)	666
CfoI	GCGC	4 cut(s)	208, 446, 547, 600
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	2 cut(s)	139, 230
CviAII	CATG	5 cut(s)	398, 418, 653, 667, 729
CviJI	RGCY	7 cut(s)	116, 235, 252, 305, 314, 329, 679
CviKI_1	RGCY	7 cut(s)	116, 235, 252, 305, 314, 329, 679
DpnI	GATC	5 cut(s)	59, 68, 142, 435, 451
DpnII	GATC	5 cut(s)	57, 66, 140, 433, 449
EaeI	YGGCCR	2 cut(s)	303, 312
EciI	GGCGGA	2 cut(s)	133, 374
Eco130I	CCWWGG	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	127
Eco47III	AGCGCT	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	5 cut(s)	401, 421, 656, 670, 732
FatI	CATG	5 cut(s)	397, 417, 652, 666, 728
FauI	CCCGC	2 cut(s)	138, 155
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	5 cut(s)	114, 134, 250, 467, 684
Fsp4HI	GCNGC	5 cut(s)	114, 134, 250, 467, 684
GlaI	GCGC	4 cut(s)	207, 445, 546, 599
GluI	GCNGC	5 cut(s)	114, 134, 250, 467, 684
HaeII	RGCGCY	2 cut(s)	447, 548
HaeIII	GGCC	2 cut(s)	305, 314
HapII	CCGG	2 cut(s)	125, 447
HgaI	GACGC	2 cut(s)	139, 230
HhaI	GCGC	4 cut(s)	208, 446, 547, 600
Hin1II	CATG	5 cut(s)	401, 421, 656, 670, 732
Hin6I	GCGC	4 cut(s)	206, 444, 545, 598
HinP1I	GCGC	4 cut(s)	206, 444, 545, 598
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	2 cut(s)	125, 447
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	2 cut(s)	615, 650
Hpy188I	TCNGA	7 cut(s)	62, 99, 140, 162, 333, 377, 438
Hpy188III	TCNNGA	5 cut(s)	125, 488, 569, 667, 703
Hpy8I	GTNNAC	2 cut(s)	615, 650
Hpy99I	CGWCG	5 cut(s)	113, 155, 206, 296, 311
HpyAV	CCTTC	3 cut(s)	315, 466, 566
HpyCH4III	ACNGT	3 cut(s)	202, 217, 370
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	503, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 311, 595, 689
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	401, 421, 656, 670, 732
HspAI	GCGC	4 cut(s)	206, 444, 545, 598
Kpn2I	TCCGGA	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	57, 66, 140, 433, 449
LmnI	GCTCC	3 cut(s)	220, 334, 640
LpnPI	CCDG	5 cut(s)	138, 221, 328, 388, 460
Lsp1109I	GCAGC	4 cut(s)	120, 125, 453, 670
LweI	GCATC	1 cut(s)	695
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	5 cut(s)	59, 68, 142, 435, 451
MboI	GATC	5 cut(s)	57, 66, 140, 433, 449
MboII	GAAGA	4 cut(s)	111, 223, 376, 435
MflI	RGATCY	2 cut(s)	140, 449
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	2 cut(s)	182, 606
MluNI	TGGCCA	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	7 cut(s)	334, 349, 463, 492, 544, 651, 669
Mox20I	TGGCCA	1 cut(s)	314
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	2 cut(s)	287, 722
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	2 cut(s)	489, 635
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	3 cut(s)	133, 318, 349
MspI	CCGG	2 cut(s)	125, 447
Mva1269I	GAATGC	1 cut(s)	408
MvnI	CGCG	2 cut(s)	150, 206
MwoI	GCNNNNNNNGC	4 cut(s)	302, 311, 595, 689
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	5 cut(s)	57, 66, 140, 433, 449
NlaIII	CATG	5 cut(s)	401, 421, 656, 670, 732
NlaIV	GGNNCC	4 cut(s)	129, 142, 330, 451
NmeAIII	GCCGAG	1 cut(s)	225
NspI	RCATGY	1 cut(s)	401
PaeR7I	CTCGAG	1 cut(s)	548
PagI	TCATGA	1 cut(s)	666
PctI	GAATGC	1 cut(s)	408
PdmI	GAANNNNTTC	2 cut(s)	287, 722
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	5 cut(s)	115, 135, 251, 468, 685
PshAI	GACNNNNGTC	1 cut(s)	371
PspN4I	GGNNCC	4 cut(s)	129, 142, 330, 451
PspPI	GGNCC	1 cut(s)	127
PspXI	VCTCGAGB	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	140, 449
RseI	CAYNNNNRTG	2 cut(s)	489, 635
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	5 cut(s)	114, 134, 250, 467, 684
Sau3AI	GATC	5 cut(s)	57, 66, 140, 433, 449
Sau96I	GGNCC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	7 cut(s)	118, 237, 312, 326, 529, 539, 662
SfaNI	GCATC	1 cut(s)	695
SfiI	GGCCNNNNNGGCC	1 cut(s)	311
Sfr274I	CTCGAG	1 cut(s)	548
SinI	GGWCC	1 cut(s)	127
SlaI	CTCGAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	2 cut(s)	489, 635
SmlI	CTYRAG	2 cut(s)	538, 548
SmoI	CTYRAG	2 cut(s)	538, 548
Sse9I	AATT	2 cut(s)	182, 606
SsiI	CCGC	8 cut(s)	43, 131, 144, 148, 249, 318, 349, 359
SspI	AATATT	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	202, 217, 370
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	180, 549, 702
TasI	AATT	2 cut(s)	182, 606
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	60, 391
TseI	GCWGC	4 cut(s)	113, 133, 466, 683
TspDTI	ATGAA	3 cut(s)	350, 683, 731
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	60, 391
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	548
XmnI	GAANNNNTTC	2 cut(s)	287, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.