Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009409

Physical Location & Seq

Genomic Coordinates Forward (+)

4226899 .. 4228981

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGGACGGCAGATTTGGTGGGAAAATGTTGAACCGCAATTCAGCACTGATCGGGCTGATCAGTTGCTTTTGCTTTCACTCCGCGTTTCTTACTAATTTCGTCGCCGCTTCTTCTCCGGACCCGCTGCTCGGATCCACCCGCGTCGTTTTTCAGACCAACTATGGCGACATTGAATTTGGGTTCTACCCGACCGTCGCGCCGAAGACTGTGGAGCACATTTTCAAGCTTGTCCGCCTCGGCGGCTACAACACCAACCACATCTTTAGGGTTGAGAAAGGGTTCGTCGCCCAAGTGGCCGACGTGGCCAGCGGAAGGTCGGCTCCGATGAACGAGGAGCAGCGGAGGGAGGCGGTGAAGACGGTGGTCGGCGAGTTCAGTGACGTCAAGCATGTCAGGGGCATCCTCTCTATGGGAAGGCACGAAGATCCGAACAGCGCCGGATCATCCTTCTCAATGCTGCTTGGAGATTCCCCTCATCTTGATGGGAAGTATGCAATATTTGGGAAAGTTACTAAAGGTGATGAGACCTTGAAAGCACTTGAGGAACTCCCTACTCGTCGCGAAGGGATTTTCGTGATGCCCACCGAGCGCATTACAATTCTGTCAACATACTACTACGACACCGAGATGGAGAATTGCGAAGACATGAGGTCCATTATGAAGCGGAGGCTTGCTGCAGCTGCCATTGAAACTGAAAGACAGAGAATGAAATGTTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

242

Amino Acids

26.95

Weight (kDa)

8.31

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26940 AT1G26940
fragaria_vesca	FvH4_4g31590 FvH4_4g31590 FvH4_4g31590
malus_domestica	MD13G1074200.v1.1 MD16G1075600.v1.1
prunus_persica	Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1
pyrus_communis	pycom13g06620 pycom16g06550
rosa_chinensis	RchiOBHm_Chr4g0440101
rosa_laevigata	RLG00000006205
rosa_multiflora	Rmu_sc0001685.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381040
rosa_rugosa	Rorug04G0324400
rosa_samantha	Rh4AG375100 Rh4BG387400 Rh4CG401900 Rh4DG381700
rosa_wichuraiana	Rw4G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
AccII	CGCG	4 cut(s)	86, 144, 200, 564
AccIII	TCCGGA	1 cut(s)	118
AclWI	GGATC	4 cut(s)	129, 142, 422, 451
AcoI	YGGCCR	2 cut(s)	297, 306
AcsI	RAATTY	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	384
AfiI	CCNNNNNNNGG	3 cut(s)	131, 315, 412
AgsI	TTSAA	5 cut(s)	34, 176, 226, 535, 692
AhdI	GACNNNNNGTC	1 cut(s)	652
AjiI	CACGTC	1 cut(s)	304
AluBI	AGCT	2 cut(s)	229, 683
AluI	AGCT	2 cut(s)	229, 683
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	4 cut(s)	129, 142, 422, 451
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	2 cut(s)	297, 306
ApeKI	GCWGC	6 cut(s)	127, 340, 460, 677, 680, 683
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 161, 193
Asp700I	GAANNNNTTC	2 cut(s)	281, 716
AspLEI	GCGC	3 cut(s)	202, 440, 594
AspS9I	GGNCC	2 cut(s)	121, 654
AsuHPI	GGTGA	2 cut(s)	367, 533
AvaII	GGWCC	2 cut(s)	121, 654
BalI	TGGCCA	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	134
BbsI	GAAGAC	3 cut(s)	212, 365, 651
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	6 cut(s)	114, 352, 447, 664, 670, 692
BccI	CCATC	2 cut(s)	479, 625
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	441
BglI	GCCNNNNNGGC	3 cut(s)	243, 296, 305
BisI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
BlsI	GCNGC	8 cut(s)	109, 129, 245, 342, 462, 679, 682, 685
Bme18I	GGWCC	2 cut(s)	121, 654
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	121, 654
BmiI	GGNNCC	3 cut(s)	123, 136, 324
BmsI	GCATC	2 cut(s)	411, 570
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	3 cut(s)	212, 365, 651
BpuEI	CTTGAG	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 315, 412
BseAI	TCCGGA	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	402, 446
BseLI	CCNNNNNNNGG	3 cut(s)	131, 315, 412
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	6 cut(s)	114, 352, 447, 664, 670, 692
Bsh1236I	CGCG	4 cut(s)	86, 144, 200, 564
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	299, 308
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	119, 441
BslI	CCNNNNNNNGG	3 cut(s)	131, 315, 412
BsmAI	GTCTC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	299, 308
Bso31I	GGTCTC	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	5 cut(s)	51, 60, 134, 427, 443
Bsp68I	TCGCGA	1 cut(s)	564
BspANI	GGCC	2 cut(s)	299, 308
BspEI	TCCGGA	1 cut(s)	118
BspFNI	CGCG	4 cut(s)	86, 144, 200, 564
BspLI	GGNNCC	3 cut(s)	123, 136, 324
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	4 cut(s)	129, 142, 422, 451
BspTNI	GGTCTC	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	51, 60, 134, 427, 443
BssNI	GRCGYC	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	196, 211, 364
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	310, 675
BstF5I	GGATG	2 cut(s)	402, 446
BstFNI	CGCG	4 cut(s)	86, 144, 200, 564
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	3 cut(s)	202, 440, 594
BstKTI	GATC	5 cut(s)	54, 63, 137, 430, 446
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	5 cut(s)	51, 60, 134, 427, 443
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	5 cut(s)	243, 296, 305, 589, 683
BstNSI	RCATGY	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	4 cut(s)	86, 144, 200, 564
BstV1I	GCAGC	6 cut(s)	114, 352, 447, 664, 670, 692
BstV2I	GAAGAC	3 cut(s)	212, 365, 651
BstX2I	RGATCY	2 cut(s)	134, 427
BstYI	RGATCY	2 cut(s)	134, 427
BsuRI	GGCC	2 cut(s)	299, 308
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	402, 446
BtsIMutI	CAGTG	2 cut(s)	47, 385
BtuMI	TCGCGA	1 cut(s)	564
Cac8I	GCNNGC	2 cut(s)	310, 675
CfoI	GCGC	3 cut(s)	202, 440, 594
Cfr13I	GGNCC	2 cut(s)	121, 654
CseI	GACGC	1 cut(s)	133
CviAII	CATG	3 cut(s)	392, 649, 723
CviJI	RGCY	8 cut(s)	58, 229, 246, 299, 308, 323, 673, 683
CviKI_1	RGCY	8 cut(s)	58, 229, 246, 299, 308, 323, 673, 683
DpnI	GATC	5 cut(s)	53, 62, 136, 429, 445
DpnII	GATC	5 cut(s)	51, 60, 134, 427, 443
DriI	GACNNNNNGTC	1 cut(s)	652
EaeI	YGGCCR	2 cut(s)	297, 306
Eam1105I	GACNNNNNGTC	1 cut(s)	652
EciI	GGCGGA	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	121, 654
FaeI	CATG	3 cut(s)	395, 652, 726
FaiI	YATR	8 cut(s)	165, 393, 413, 495, 613, 650, 662, 724
FatI	CATG	3 cut(s)	391, 648, 722
FauI	CCCGC	2 cut(s)	132, 149
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
FokI	GGATG	2 cut(s)	389, 433
Fsp4HI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
GlaI	GCGC	3 cut(s)	201, 439, 593
GluI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	299, 308
HapII	CCGG	2 cut(s)	119, 441
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	3 cut(s)	202, 440, 594
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	395, 652, 726
Hin6I	GCGC	3 cut(s)	200, 438, 592
HinP1I	GCGC	3 cut(s)	200, 438, 592
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	470
HpaII	CCGG	2 cut(s)	119, 441
HphI	GGTGA	2 cut(s)	367, 533
Hpy166II	GTNNAC	1 cut(s)	609
Hpy188I	TCNGA	4 cut(s)	134, 156, 327, 432
Hpy188III	TCNNGA	4 cut(s)	119, 482, 563, 577
Hpy8I	GTNNAC	1 cut(s)	609
Hpy99I	CGWCG	6 cut(s)	107, 149, 200, 290, 305, 564
HpyAV	CCTTC	4 cut(s)	309, 411, 460, 560
HpyCH4III	ACNGT	3 cut(s)	196, 211, 364
HpyCH4IV	ACGT	2 cut(s)	303, 384
HpyCH4V	TGCA	2 cut(s)	497, 680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	243, 296, 305, 589, 683
HpySE526I	ACGT	2 cut(s)	303, 384
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	395, 652, 726
HspAI	GCGC	3 cut(s)	200, 438, 592
Kpn2I	TCCGGA	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	51, 60, 134, 427, 443
LmnI	GCTCC	3 cut(s)	214, 328, 337
LpnPI	CCDG	4 cut(s)	132, 322, 382, 454
Lsp1109I	GCAGC	6 cut(s)	114, 352, 447, 664, 670, 692
LweI	GCATC	2 cut(s)	411, 570
MaeII	ACGT	2 cut(s)	303, 384
MaeIII	GTNAC	2 cut(s)	380, 511
MalI	GATC	5 cut(s)	53, 62, 136, 429, 445
MboI	GATC	5 cut(s)	51, 60, 134, 427, 443
MboII	GAAGA	5 cut(s)	105, 217, 370, 437, 656
MflI	RGATCY	2 cut(s)	134, 427
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	5 cut(s)	40, 97, 176, 600, 637
MluNI	TGGCCA	1 cut(s)	308
MnlI	CCTC	9 cut(s)	248, 328, 339, 343, 416, 486, 538, 645, 663
Mox20I	TGGCCA	1 cut(s)	308
MroI	TCCGGA	1 cut(s)	118
MroXI	GAANNNNTTC	2 cut(s)	281, 716
MscI	TGGCCA	1 cut(s)	308
MslI	CAYNNNNRTG	2 cut(s)	483, 629
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	4 cut(s)	127, 312, 343, 683
MspI	CCGG	2 cut(s)	119, 441
MvnI	CGCG	4 cut(s)	86, 144, 200, 564
MwoI	GCNNNNNNNGC	5 cut(s)	243, 296, 305, 589, 683
NdeII	GATC	5 cut(s)	51, 60, 134, 427, 443
NlaIII	CATG	3 cut(s)	395, 652, 726
NlaIV	GGNNCC	3 cut(s)	123, 136, 324
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	380
NruI	TCGCGA	1 cut(s)	564
NspI	RCATGY	1 cut(s)	395
PdmI	GAANNNNTTC	2 cut(s)	281, 716
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	8 cut(s)	109, 129, 245, 342, 462, 679, 682, 685
PshAI	GACNNNNGTC	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	123, 136, 324
PspPI	GGNCC	2 cut(s)	121, 654
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	2 cut(s)	134, 427
PvuII	CAGCTG	1 cut(s)	683
RruI	TCGCGA	1 cut(s)	564
RseI	CAYNNNNRTG	2 cut(s)	483, 629
SatI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
Sau3AI	GATC	5 cut(s)	51, 60, 134, 427, 443
Sau96I	GGNCC	2 cut(s)	121, 654
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	8 cut(s)	231, 306, 320, 387, 523, 533, 656, 685
SfaNI	GCATC	2 cut(s)	411, 570
SfcI	CTRYAG	1 cut(s)	678
SfiI	GGCCNNNNNGGCC	1 cut(s)	305
SinI	GGWCC	2 cut(s)	121, 654
SmiMI	CAYNNNNRTG	2 cut(s)	483, 629
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	5 cut(s)	40, 97, 176, 600, 637
SspI	AATATT	1 cut(s)	501
TaaI	ACNGT	3 cut(s)	196, 211, 364
TaiI	ACGT	2 cut(s)	306, 387
TasI	AATT	5 cut(s)	40, 97, 176, 600, 637
TauI	GCSGC	2 cut(s)	110, 246
TfiI	GAWTC	1 cut(s)	470
TscAI	CASTG	2 cut(s)	54, 385
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	6 cut(s)	127, 340, 460, 677, 680, 683
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	4 cut(s)	17, 344, 677, 725
TspRI	CASTG	2 cut(s)	54, 385
VpaK11BI	GGWCC	2 cut(s)	121, 654
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	395
XmnI	GAANNNNTTC	2 cut(s)	281, 716
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.