Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009409

Physical Location & Seq

Genomic Coordinates Forward (+)

65034396 .. 65037154

Gene Structure 2759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG401900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTGGAGCCGAAAGTCAGCTCTGATCGGAGTTTTGGGTTGCTTTTGTATCTACACAACATTTCTTACCAGCGTCATAGCTTCGTCTCAGGAATCTCTGCTCGGATCCGCCCGCGTCGTTTTTCAGACCAATTTTGGGGACATTGAATTTGGGTTCTTCCCAGGAGCTGCACCCAAAACCGTTGACCACATTTTCAAGCTGGTCCGTCTAGGTTGCTATAACACCAACCACTTCTTTAGGGTCGACAAGGGTTTTGTGGCCCAAGTCGCCGACGTGGTCAGCGGAAGATCGGCAACTATGAACGAGCAGCAAAGAGCAGAAGCGGAGAAGACCGTGGTGGGTGAATTCAGTGATGTGAAACATGTCAGAGGCATTCTATCAATGGGAAGATATGAAGACCCAAATAGTGCGGCTTCCTCATTTTCGATGCTTCTTGGAGATGCTCCTCATCTTGATGGTCAGGTAGGTATGGTGATTGCAACTAGATTGTCTAGGTCAGCATCACCTATTGAGCACGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

174

Amino Acids

18.96

Weight (kDa)

6.2

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	39 - 154	5.9e-23	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26940 AT1G26940
fragaria_vesca	FvH4_4g31590 FvH4_4g31590 FvH4_4g31590
malus_domestica	MD13G1074200.v1.1 MD16G1075600.v1.1
prunus_persica	Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1
pyrus_communis	pycom13g06620 pycom16g06550
rosa_chinensis	RchiOBHm_Chr4g0440101
rosa_laevigata	RLG00000006205
rosa_multiflora	Rmu_sc0001685.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381040
rosa_rugosa	Rorug04G0324400
rosa_samantha	Rh4AG375100 Rh4BG387400 Rh4CG401900 Rh4DG381700
rosa_wichuraiana	Rw4G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	114
AciI	CCGC	5 cut(s)	108, 112, 282, 323, 410
AclWI	GGATC	2 cut(s)	99, 112
AcsI	RAATTY	2 cut(s)	146, 344
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	146, 196
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	4 cut(s)	20, 80, 167, 199
AluI	AGCT	4 cut(s)	20, 80, 167, 199
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	99, 112
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	167, 307
ApoI	RAATTY	2 cut(s)	146, 344
ArsI	GACNNNNNNTTYG	4 cut(s)	131, 163, 236, 268
AspS9I	GGNCC	2 cut(s)	202, 259
AsuHPI	GGTGA	3 cut(s)	353, 484, 495
AvaII	GGWCC	1 cut(s)	202
BamHI	GGATCC	1 cut(s)	104
BbsI	GAAGAC	2 cut(s)	335, 402
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	154, 319
BccI	CCATC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	3 cut(s)	209, 483, 492
BisI	GCNGC	3 cut(s)	168, 308, 411
BlsI	GCNGC	3 cut(s)	169, 309, 412
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	202
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	202, 259
BmiI	GGNNCC	2 cut(s)	8, 106
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	3 cut(s)	417, 430, 509
BpiI	GAAGAC	2 cut(s)	335, 402
BsaJI	CCNNGG	2 cut(s)	160, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	160, 333
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	2 cut(s)	154, 319
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	24, 104, 287
BspACI	CCGC	5 cut(s)	108, 112, 282, 323, 410
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	8, 106
BspPI	GGATC	2 cut(s)	99, 112
BssECI	CCNNGG	2 cut(s)	160, 333
BssMI	GATC	3 cut(s)	24, 104, 287
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	181, 334
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	27, 107, 290
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	3 cut(s)	24, 104, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	154, 319
BstV2I	GAAGAC	2 cut(s)	335, 402
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	333
BtrI	CACGTC	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	112
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	202, 259
CseI	GACGC	2 cut(s)	61, 103
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	7 cut(s)	9, 20, 80, 167, 199, 260, 413
CviKI_1	RGCY	7 cut(s)	9, 20, 80, 167, 199, 260, 413
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	3 cut(s)	26, 106, 289
DpnII	GATC	3 cut(s)	24, 104, 287
EciI	GGCGGA	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	365
FaiI	YATR	6 cut(s)	77, 219, 299, 363, 393, 470
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	361
FauI	CCCGC	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	168, 308, 411
Fsp4HI	GCNGC	3 cut(s)	168, 308, 411
FspBI	CTAG	3 cut(s)	209, 483, 492
GluI	GCNGC	3 cut(s)	168, 308, 411
HaeIII	GGCC	1 cut(s)	260
HgaI	GACGC	2 cut(s)	61, 103
Hin1II	CATG	1 cut(s)	365
HincII	GTYRAC	2 cut(s)	184, 244
HindII	GTYRAC	2 cut(s)	184, 244
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	3 cut(s)	353, 484, 495
Hpy166II	GTNNAC	2 cut(s)	184, 244
Hpy188I	TCNGA	5 cut(s)	24, 29, 104, 126, 368
Hpy188III	TCNNGA	2 cut(s)	89, 452
Hpy8I	GTNNAC	2 cut(s)	184, 244
Hpy99I	CGWCG	2 cut(s)	119, 275
HpyCH4III	ACNGT	2 cut(s)	181, 334
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	170, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	24, 104, 287
LmnI	GCTCC	3 cut(s)	6, 164, 448
LpnPI	CCDG	6 cut(s)	74, 82, 147, 174, 185, 446
Lsp1109I	GCAGC	2 cut(s)	154, 319
LweI	GCATC	3 cut(s)	417, 430, 509
MaeI	CTAG	3 cut(s)	209, 483, 492
MaeII	ACGT	1 cut(s)	273
MalI	GATC	3 cut(s)	26, 106, 289
MboI	GATC	3 cut(s)	24, 104, 287
MboII	GAAGA	5 cut(s)	148, 297, 340, 399, 407
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	3 cut(s)	130, 146, 344
MnlI	CCTC	3 cut(s)	362, 427, 456
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	3 cut(s)	24, 104, 287
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	2 cut(s)	8, 106
NspI	RCATGY	1 cut(s)	365
PciI	ACATGT	1 cut(s)	361
PctI	GAATGC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	169, 309, 412
PscI	ACATGT	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	8, 106
PspPI	GGNCC	2 cut(s)	202, 259
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	242
SatI	GCNGC	3 cut(s)	168, 308, 411
Sau3AI	GATC	3 cut(s)	24, 104, 287
Sau96I	GGNCC	2 cut(s)	202, 259
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	3 cut(s)	417, 430, 509
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	3 cut(s)	130, 146, 344
SsiI	CCGC	5 cut(s)	108, 112, 282, 323, 410
SspMI	CTAG	3 cut(s)	209, 483, 492
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	181, 334
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	243, 425
TasI	AATT	3 cut(s)	130, 146, 344
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	2 cut(s)	167, 307
TspDTI	ATGAA	2 cut(s)	314, 408
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	2 cut(s)	146, 344
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	3 cut(s)	209, 483, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.