Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009409

Physical Location & Seq

Genomic Coordinates Forward (+)

30671041 .. 30674517

Gene Structure 3477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTGGAGCCGGAAATCAGCTCTGATCGGATTATTGGTCTTGTTTTGTTTGCACACTACATTCTTTACCAGCGCCATAGCTTCGTCTCAGGAATCTCTACTCGGATCCGCCCGCGTCGTTTTTCAGACCAATTTTGGGGAGATTGAGTTCGGGTTCTTCCCCAGCGTGGCACCCAAAACCGTTGACCACATTTTCAAGCTGGTTCGTCTCGGATGCTATAACACCAACCACTTCTTTAGGGTCGACAAGGGCTTCGTGGCCCAAGTCGCCGATGTTGTCGGTGGAAGATTGGCCCCTATGAATGAGGAGCAAAGACAAGAAGCTGAGAAGACTGTGGTCGGTGAGTTCAGTGATGTGAAACATGTTCGAGGCATTCTATCTATGGGAAGATATGAAGATCCAAATAGTGCGGCGTCCTCATTTTCGATGCTTCTCGGAGATGCGCCTCATCTCGATCGTCAGTACGCAATATTTGGTAAAGTGACTAAAGGTGATGAGACCTTGAGAAAGCTTGAGGAACTCCCTACTCGTCGCGAGGGGATTTTTGTGATGCCGACCGAACGTATAACAATTCTGTCATCATACTACTATGATACTGAGATGGAGAATTGTGAACATGAGAGGTCAATACTGAAGCGGAGACTTACTGCATCTGCTATTGAAATTGAAAGACAGAGAATGAAATGCTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

232

Amino Acids

26.25

Weight (kDa)

7.02

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	39 - 192	1.9e-32	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26940 AT1G26940
fragaria_vesca	FvH4_4g31590 FvH4_4g31590 FvH4_4g31590
malus_domestica	MD13G1074200.v1.1 MD16G1075600.v1.1
prunus_persica	Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1
pyrus_communis	pycom13g06620 pycom16g06550
rosa_chinensis	RchiOBHm_Chr4g0440101
rosa_laevigata	RLG00000006205
rosa_multiflora	Rmu_sc0001685.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381040
rosa_rugosa	Rorug04G0324400
rosa_samantha	Rh4AG375100 Rh4BG387400 Rh4CG401900 Rh4DG381700
rosa_wichuraiana	Rw4G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	2 cut(s)	114, 534
AciI	CCGC	4 cut(s)	108, 112, 410, 637
AclWI	GGATC	3 cut(s)	99, 112, 392
AcuI	CTGAAG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	135, 166
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	196, 662, 668
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	5 cut(s)	20, 80, 199, 323, 511
AluI	AGCT	5 cut(s)	20, 80, 199, 323, 511
Alw26I	GTCTC	4 cut(s)	90, 212, 491, 634
AlwI	GGATC	3 cut(s)	99, 112, 392
AoxI	GGCC	2 cut(s)	258, 291
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	686
AspLEI	GCGC	2 cut(s)	74, 445
AspS9I	GGNCC	2 cut(s)	259, 292
AsuHPI	GGTGA	2 cut(s)	353, 503
BamHI	GGATCC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	335
BccI	CCATC	1 cut(s)	595
BcoDI	GTCTC	4 cut(s)	90, 212, 491, 634
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmgT120I	GGNCC	2 cut(s)	259, 292
BmiI	GGNNCC	4 cut(s)	8, 106, 171, 294
BmsI	GCATC	5 cut(s)	203, 417, 430, 540, 659
BoxI	GACNNNNGTC	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	523, 533
BsaHI	GRCGYC	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 166
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	135, 166
BseMII	CTCAG	3 cut(s)	101, 315, 588
BseRI	GAGGAG	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	161
Bsh1236I	CGCG	2 cut(s)	114, 534
Bsh1285I	CGRYCG	2 cut(s)	457, 558
BshFI	GGCC	2 cut(s)	260, 293
BshNI	GGYRCC	1 cut(s)	169
BsiEI	CGRYCG	2 cut(s)	457, 558
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	135, 166
BsmAI	GTCTC	4 cut(s)	90, 212, 491, 634
BsmBI	CGTCTC	2 cut(s)	90, 212
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	260, 293
Bso31I	GGTCTC	1 cut(s)	491
Bsp143I	GATC	4 cut(s)	24, 104, 397, 454
Bsp68I	TCGCGA	1 cut(s)	534
BspACI	CCGC	4 cut(s)	108, 112, 410, 637
BspANI	GGCC	2 cut(s)	260, 293
BspCNI	CTCAG	3 cut(s)	100, 316, 589
BspFNI	CGCG	2 cut(s)	114, 534
BspLI	GGNNCC	4 cut(s)	8, 106, 171, 294
BspPI	GGATC	3 cut(s)	99, 112, 392
BspT107I	GGYRCC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	491
BssMI	GATC	4 cut(s)	24, 104, 397, 454
BssNI	GRCGYC	1 cut(s)	413
Bst4CI	ACNGT	2 cut(s)	181, 334
BstACI	GRCGYC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	87, 324, 597
BstF5I	GGATG	1 cut(s)	218
BstFNI	CGCG	2 cut(s)	114, 534
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 445
BstKTI	GATC	4 cut(s)	27, 107, 400, 457
BstMAI	GTCTC	4 cut(s)	90, 212, 491, 634
BstMBI	GATC	4 cut(s)	24, 104, 397, 454
BstMCI	CGRYCG	2 cut(s)	457, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	365
BstPAI	GACNNNNGTC	1 cut(s)	335
BstUI	CGCG	2 cut(s)	114, 534
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	2 cut(s)	104, 397
BstYI	RGATCY	2 cut(s)	104, 397
BsuRI	GGCC	2 cut(s)	260, 293
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	355
BtuMI	TCGCGA	1 cut(s)	534
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	2 cut(s)	74, 445
Cfr13I	GGNCC	2 cut(s)	259, 292
CseI	GACGC	2 cut(s)	103, 402
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	3 cut(s)	362, 617, 693
CviJI	RGCY	9 cut(s)	9, 20, 80, 199, 252, 260, 293, 323, 511
CviKI_1	RGCY	9 cut(s)	9, 20, 80, 199, 252, 260, 293, 323, 511
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	3 cut(s)	87, 324, 597
DpnI	GATC	4 cut(s)	26, 106, 399, 456
DpnII	GATC	4 cut(s)	24, 104, 397, 454
EciI	GGCGGA	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	653
Esp3I	CGTCTC	2 cut(s)	90, 212
FaeI	CATG	3 cut(s)	365, 620, 696
FatI	CATG	3 cut(s)	361, 616, 692
FauI	CCCGC	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	411
GlaI	GCGC	2 cut(s)	73, 444
GluI	GCNGC	1 cut(s)	411
GsaI	CCCAGC	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	260, 293
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	2 cut(s)	103, 402
HhaI	GCGC	2 cut(s)	74, 445
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	3 cut(s)	365, 620, 696
Hin6I	GCGC	2 cut(s)	72, 443
HinP1I	GCGC	2 cut(s)	72, 443
HincII	GTYRAC	2 cut(s)	184, 244
HindII	GTYRAC	2 cut(s)	184, 244
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	2 cut(s)	353, 503
Hpy166II	GTNNAC	3 cut(s)	184, 244, 614
Hpy188I	TCNGA	6 cut(s)	24, 29, 104, 126, 212, 437
Hpy188III	TCNNGA	3 cut(s)	89, 452, 533
Hpy8I	GTNNAC	3 cut(s)	184, 244, 614
Hpy99I	CGWCG	2 cut(s)	119, 534
HpyCH4III	ACNGT	2 cut(s)	181, 334
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	2 cut(s)	52, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	87, 324, 597
HpySE526I	ACGT	1 cut(s)	562
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	3 cut(s)	365, 620, 696
HspAI	GCGC	2 cut(s)	72, 443
Kzo9I	GATC	4 cut(s)	24, 104, 397, 454
LmnI	GCTCC	2 cut(s)	6, 307
LpnPI	CCDG	5 cut(s)	23, 74, 82, 175, 185
LweI	GCATC	5 cut(s)	203, 417, 430, 540, 659
MaeII	ACGT	1 cut(s)	562
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	4 cut(s)	26, 106, 399, 456
MboI	GATC	4 cut(s)	24, 104, 397, 454
MboII	GAAGA	5 cut(s)	148, 297, 340, 399, 407
MflI	RGATCY	2 cut(s)	104, 397
MluCI	AATT	4 cut(s)	130, 570, 607, 663
MnlI	CCTC	7 cut(s)	298, 362, 427, 456, 508, 529, 615
MroXI	GAANNNNTTC	1 cut(s)	686
MspI	CCGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	372
MvnI	CGCG	2 cut(s)	114, 534
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	4 cut(s)	24, 104, 397, 454
NlaIII	CATG	3 cut(s)	365, 620, 696
NlaIV	GGNNCC	4 cut(s)	8, 106, 171, 294
NmuCI	GTSAC	1 cut(s)	481
NruI	TCGCGA	1 cut(s)	534
NspI	RCATGY	1 cut(s)	365
PciI	ACATGT	1 cut(s)	361
PctI	GAATGC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	686
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	412
Ple19I	CGATCG	1 cut(s)	457
PscI	ACATGT	1 cut(s)	361
PshAI	GACNNNNGTC	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	161
PspN4I	GGNNCC	4 cut(s)	8, 106, 171, 294
PspPI	GGNCC	2 cut(s)	259, 292
PsuI	RGATCY	2 cut(s)	104, 397
PvuI	CGATCG	1 cut(s)	457
RruI	TCGCGA	1 cut(s)	534
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SalI	GTCGAC	1 cut(s)	242
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	4 cut(s)	24, 104, 397, 454
Sau96I	GGNCC	2 cut(s)	259, 292
SetI	ASST	9 cut(s)	22, 82, 201, 325, 493, 503, 513, 565, 626
SfaNI	GCATC	5 cut(s)	203, 417, 430, 540, 659
SmlI	CTYRAG	2 cut(s)	502, 512
SmoI	CTYRAG	2 cut(s)	502, 512
Sse9I	AATT	4 cut(s)	130, 570, 607, 663
SsiI	CCGC	4 cut(s)	108, 112, 410, 637
SspI	AATATT	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	181, 334
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	4 cut(s)	243, 367, 425, 453
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	4 cut(s)	130, 570, 607, 663
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	314, 408, 695
TspRI	CASTG	1 cut(s)	355
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.