Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009409

Physical Location & Seq

Genomic Coordinates Reverse (-)

27859550 .. 27862256

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G271800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGGGCACATTTTGGGGGAAAATGTTGAACCGTAGATCAGCATTGATCGGATTCATCAGTTGCTTTTGTTTTTCTTCCACATTTCTCAGTGGTAGTATTGTTGCTGCTTCACCTCACGACCCATTACTCGGATCCGCTCGCGTTGTTTTTCAGACCAATTATGGAGACATCGAATTCGGGTTCTACCCGAGCGTCGCCCCCAAAACCGTTGAGCACATCTACAAGCTGGTTCGTCTCGGAGGCTATAACACCAACCACTTCTTTAGGGTTGAGAAGGGCTTCGTTGCCCAAGTGGCTGACGTGGCCAGTGGAAGATTGGCTCCCATGAACGAGGAGCAGAGAAGAGAAGCTGAGAAGACGGTGATCGGTGAGTTCAGTCAAGTTAAGCATGTCAGGGGCATTCTCTCAATGGGAAGATATGAAGACCCAAATAGTGCCGCATCCTCTTTCTCAATGCTTCTTGGAGATTCCCCTCATCTTGATGGTCAGTATGCAATATTTGGGAAAGTTACTAAGGGTGATGAGACCTTGAAAGCGCTTGAGGAACTCCCTACTCACCGCGAGGGGATTTTTGTGATGCCTACTGAGCGCATTACAATTCTGTCATCATACTACTATGATACCGAGATGGAGAGTTGTGAACATGAGAGGTCAATTATGAAGCGGAGGCTCGCTGCATCTGCTATTGAAATTGAAAGACAGAGAATGAAATGCTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

242

Amino Acids

27.12

Weight (kDa)

7.71

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26940 AT1G26940
fragaria_vesca	FvH4_4g31590 FvH4_4g31590 FvH4_4g31590
malus_domestica	MD13G1074200.v1.1 MD16G1075600.v1.1
prunus_persica	Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1
pyrus_communis	pycom13g06620 pycom16g06550
rosa_chinensis	RchiOBHm_Chr4g0440101
rosa_laevigata	RLG00000006205
rosa_multiflora	Rmu_sc0001685.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381040
rosa_rugosa	Rorug04G0324400
rosa_samantha	Rh4AG375100 Rh4BG387400 Rh4CG401900 Rh4DG381700
rosa_wichuraiana	Rw4G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	140
AccII	CGCG	2 cut(s)	144, 564
AciI	CCGC	4 cut(s)	138, 441, 562, 667
AclWI	GGATC	2 cut(s)	129, 142
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	176
AfeI	AGCGCT	1 cut(s)	540
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	31, 535, 692, 698
AjiI	CACGTC	1 cut(s)	304
AluBI	AGCT	2 cut(s)	229, 353
AluI	AGCT	2 cut(s)	229, 353
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	162, 242, 521
AlwI	GGATC	2 cut(s)	129, 142
Ama87I	CYCGRG	1 cut(s)	190
Aor51HI	AGCGCT	1 cut(s)	540
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	107, 677
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
Asp700I	GAANNNNTTC	2 cut(s)	281, 716
AspLEI	GCGC	2 cut(s)	541, 594
AsuHPI	GGTGA	5 cut(s)	105, 376, 383, 533, 551
AvaI	CYCGRG	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	134
BbsI	GAAGAC	2 cut(s)	365, 432
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	94, 664
BccI	CCATC	2 cut(s)	479, 625
BcoDI	GTCTC	3 cut(s)	162, 242, 521
BfoI	RGCGCY	1 cut(s)	542
BglI	GCCNNNNNGGC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	108, 441, 678
BlsI	GCNGC	3 cut(s)	109, 442, 679
BmeT110I	CYCGRG	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	136, 324
BmsI	GCATC	3 cut(s)	452, 570, 689
BpiI	GAAGAC	2 cut(s)	365, 432
BpuEI	CTTGAG	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	103, 345, 579
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	94, 664
Bsh1236I	CGCG	2 cut(s)	144, 564
BshFI	GGCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	3 cut(s)	162, 242, 521
BsmBI	CGTCTC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	521
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	11, 219
Bsp143I	GATC	4 cut(s)	38, 48, 134, 366
BspACI	CCGC	4 cut(s)	138, 441, 562, 667
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	3 cut(s)	102, 346, 580
BspFNI	CGCG	2 cut(s)	144, 564
BspLI	GGNNCC	2 cut(s)	136, 324
BspPI	GGATC	2 cut(s)	129, 142
BspTNI	GGTCTC	1 cut(s)	521
BsrBI	CCGCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	38, 48, 134, 366
Bst4CI	ACNGT	3 cut(s)	35, 211, 364
Bst6I	CTCTTC	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	142, 675
BstDEI	CTNAG	4 cut(s)	89, 354, 516, 588
BstF5I	GGATG	1 cut(s)	443
BstFNI	CGCG	2 cut(s)	144, 564
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	2 cut(s)	541, 594
BstKTI	GATC	4 cut(s)	41, 51, 137, 369
BstMAI	GTCTC	3 cut(s)	162, 242, 521
BstMBI	GATC	4 cut(s)	38, 48, 134, 366
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 305, 589, 683
BstNSI	RCATGY	1 cut(s)	395
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	2 cut(s)	144, 564
BstV1I	GCAGC	2 cut(s)	94, 664
BstV2I	GAAGAC	2 cut(s)	365, 432
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	308
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	443
BtsIMutI	CAGTG	2 cut(s)	97, 316
Cac8I	GCNNGC	2 cut(s)	142, 675
CfoI	GCGC	2 cut(s)	541, 594
CseI	GACGC	1 cut(s)	184
CviAII	CATG	4 cut(s)	328, 392, 647, 723
CviJI	RGCY	8 cut(s)	229, 246, 282, 299, 308, 323, 353, 673
CviKI_1	RGCY	8 cut(s)	229, 246, 282, 299, 308, 323, 353, 673
DdeI	CTNAG	4 cut(s)	89, 354, 516, 588
DpnI	GATC	4 cut(s)	40, 50, 136, 368
DpnII	GATC	4 cut(s)	38, 48, 134, 366
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	521
Eco47III	AGCGCT	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	4 cut(s)	331, 395, 650, 726
FatI	CATG	4 cut(s)	327, 391, 646, 722
Fnu4HI	GCNGC	3 cut(s)	108, 441, 678
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	3 cut(s)	108, 441, 678
GlaI	GCGC	2 cut(s)	540, 593
GluI	GCNGC	3 cut(s)	108, 441, 678
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	308
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	541, 594
Hin1II	CATG	4 cut(s)	331, 395, 650, 726
Hin6I	GCGC	2 cut(s)	539, 592
HinP1I	GCGC	2 cut(s)	539, 592
HinfI	GANTC	2 cut(s)	54, 470
HphI	GGTGA	5 cut(s)	105, 376, 383, 533, 551
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	4 cut(s)	53, 134, 156, 242
Hpy188III	TCNNGA	2 cut(s)	119, 482
Hpy8I	GTNNAC	1 cut(s)	644
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	35, 211, 364
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	497, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 305, 589, 683
HpyF3I	CTNAG	4 cut(s)	89, 354, 516, 588
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	331, 395, 650, 726
HspAI	GCGC	2 cut(s)	539, 592
Kzo9I	GATC	4 cut(s)	38, 48, 134, 366
LmnI	GCTCC	2 cut(s)	328, 337
LpnPI	CCDG	3 cut(s)	215, 322, 382
Lsp1109I	GCAGC	2 cut(s)	94, 664
LweI	GCATC	3 cut(s)	452, 570, 689
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	4 cut(s)	40, 50, 136, 368
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	4 cut(s)	38, 48, 134, 366
MboII	GAAGA	6 cut(s)	69, 327, 357, 370, 429, 437
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	2 cut(s)	11, 219
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	5 cut(s)	160, 176, 600, 657, 693
MluNI	TGGCCA	1 cut(s)	308
MnlI	CCTC	9 cut(s)	126, 236, 328, 457, 486, 538, 559, 645, 663
Mox20I	TGGCCA	1 cut(s)	308
MroXI	GAANNNNTTC	2 cut(s)	281, 716
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	402
MvnI	CGCG	2 cut(s)	144, 564
MwoI	GCNNNNNNNGC	4 cut(s)	296, 305, 589, 683
NdeII	GATC	4 cut(s)	38, 48, 134, 366
NlaIII	CATG	4 cut(s)	331, 395, 650, 726
NlaIV	GGNNCC	2 cut(s)	136, 324
NspI	RCATGY	1 cut(s)	395
PctI	GAATGC	1 cut(s)	402
PdmI	GAANNNNTTC	2 cut(s)	281, 716
PfeI	GAWTC	2 cut(s)	54, 470
PkrI	GCNGC	3 cut(s)	109, 442, 679
PspN4I	GGNNCC	2 cut(s)	136, 324
PsuI	RGATCY	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	3 cut(s)	108, 441, 678
Sau3AI	GATC	4 cut(s)	38, 48, 134, 366
SduI	GDGCHC	2 cut(s)	11, 219
SetI	ASST	6 cut(s)	118, 231, 306, 355, 533, 656
SfaNI	GCATC	3 cut(s)	452, 570, 689
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	5 cut(s)	160, 176, 600, 657, 693
SsiI	CCGC	4 cut(s)	138, 441, 562, 667
SspI	AATATT	1 cut(s)	501
TaaI	ACNGT	3 cut(s)	35, 211, 364
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	174
TasI	AATT	5 cut(s)	160, 176, 600, 657, 693
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	54, 470
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	2 cut(s)	97, 316
TseI	GCWGC	2 cut(s)	107, 677
TspDTI	ATGAA	6 cut(s)	17, 46, 344, 438, 677, 725
TspRI	CASTG	2 cut(s)	97, 316
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmnI	GAANNNNTTC	2 cut(s)	281, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.