AT1G27040

atnrt1 2,nrt1 2,ntl1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9386693 .. 9390042
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27040.2

Sequence Viewer

Length: 1704 bp
ATGGAAGTAGAAATGCATGGTGATGTCTCCAAATGGGAAGGCTACGCTGACTGGAGAAACAAAGCCGCCTTGAGAGGCCGTCACGGCGGAATGCTCGCCGCCTCCTTCGTCTTGGCGGTGGAGATATTGGAGAATCTAGCGTTTTTAGCGAACGCAAGCAACTTGGTGTTGTATCTCAAGAACTTCATGCACATGTCTCTAGCCAGATCGTCGAGTGAAGTGACCACTTTCATGGCCACAGCCTTCCTTCTCGCTCTCCTCGGTGGCTTCCTTGCTGACGCCTTCTTCTCCACATTCGTCATTTTCCTCATCTCCGCCTCCATCGAGTTTCTGGGACTTATCCTGCTCACAATCCAAGCCCGGCGTCCGTCCTTAATGCCGCCGCCATGCAAGAGCTCTGCCGCATTGCGATGCGAGGTCGTTGGTGGTTCGAAGGCGGCGTTTCTGTTTGTGGGACTATATCTAGTGTCTCTAGGAATCGGAGGGATAAAAGGGTCATTACCGTCACACGGAGCAGAGCAATTCGACGAGGGCACGCCCAAAGGTCGAAAACAAAGATCCACATTCTTCAACTACTATGTGTTCTGTCTCTCATGTGGAGCACTTGTGGCCGTGACGTTCGTTGTCTGGATCGAGGACAACAAAGGCTGGGAGTGGGGATTTGGAGTCTCCACCATCTCTATATTTCTCTCCATTCTTGTCTTTCTATTAGGTTCGAGGTTTTATAAAAACAAAATCCCTCGTGGTAGTCCTCTTACCACAATCTTTAAGGTTCTTCTCGCAGCTTCCATAGTTAGTTGCTCGAGTAAAACTTCGAGTAATCACTTTACTTCCAGAGAAGTTCAATCAGAACATGAAGAAAAGACGCCTTCTCAGTCACTTACCAATAGCTTGACATGTCTAAACAAAGCAATAGAGGGGAAAACACACCATATTTGGCTCGAATGCACGGTCCAACAAGTAGAAGACGTGAAGATTGTGCTAAAAATGCTTCCAATATTTGGTTGCACCATAATGCTCAATTGCTGCTTAGCTCAGCTTTCTACTTACTCTGTCCACCAAGCTGCAACGATGAACAGAAAGATCGTTAACTTCAATGTTCCTTCAGCTTCTTTACCGGTTTTTCCGGTTGTTTTCATGCTGATTCTTGCTCCAACCTATGACCATCTGATTATCCCATTCGCAAGAAAAGTAACCAAATCCGAAATTGGTATCACTCATTTGCAAAGAATCGGTGTAGGCTTAGTCCTTTCGATAGTAGCAATGGCAGTGGCTGCTTTAGTCGAGTTAAAGCGGAAGCAAGTGGCTAGAGAAGCTGGATTACTTGACTCTGAAGAAACTTTACCAATCACTTTTCTGTGGATTGCTCTTCAGTATCTGTTTCTAGGATCAGCTGATCTGTTCACACTAGCTGGATTGCTAGAGTTTTTCTTCACAGAAGCACCTTCTTCTATGAGATCATTGGCTACATCGCTCTCATGGGCTTCTTTGGCATTAGGGTATTATCTAAGCTCGGTGATGGTGCCGATAGTGAACAGAGTAACTAAGAGTGCTGGACAAAGCCCATGGCTTGGAGAAAAACTTAACCGTAACAGACTAGACTTGTTTTATTGGCTCATGTGTGTCCTAAGTGTTGTTAACTTCTTGCACTATCTCTTCTGGGCAAAGCGTTACAAGTATATCTCAACTGGTTCAATAAGTTGA

Protein Analysis

567

Amino Acids

62.65

Weight (kDa)

9.11

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 96 - 520 2.5e-122 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
AccB1I GGYRCC 1 cut(s) 1522
AccB7I CCANNNNNTGG 2 cut(s) 1001, 1571
AclWI GGATC 3 cut(s) 552, 638, 1396
AcoI YGGCCR 2 cut(s) 234, 609
AcuI CTGAAG 3 cut(s) 1089, 1353, 1355
AcyI GRCGYC 3 cut(s) 279, 364, 866
AfiI CCNNNNNNNGG 3 cut(s) 509, 1001, 1571
AflIII ACRYGT 2 cut(s) 192, 896
AgeI ACCGGT 1 cut(s) 1117
AgsI TTSAA 4 cut(s) 571, 845, 1096, 1695
AjiI CACGTC 1 cut(s) 970
Alw21I GWGCWC 2 cut(s) 398, 604
Alw26I GTCTC 5 cut(s) 31, 201, 474, 593, 673
AlwI GGATC 3 cut(s) 552, 638, 1396
AlwNI CAGNNNCTG 2 cut(s) 1274, 1378
Ama87I CYCGRG 1 cut(s) 802
AoxI GGCC 3 cut(s) 76, 234, 609
ApeKI GCWGC 4 cut(s) 782, 1026, 1064, 1274
ArsI GACNNNNNNTTYG 2 cut(s) 936, 968
AsiGI ACCGGT 1 cut(s) 1117
AspS9I GGNCC 1 cut(s) 952
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 32, 1528
AsuII TTCGAA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 802
AvaII GGWCC 1 cut(s) 952
BaeGI GKGCMC 1 cut(s) 536
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 1522
BanII GRGCYC 1 cut(s) 398
BarI GAAGNNNNNNTAC 4 cut(s) 1305, 1326, 1337, 1358
BauI CACGAG 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 2 cut(s) 398, 604
BbvI GCAGC 4 cut(s) 794, 1013, 1051, 1261
BccI CCATC 4 cut(s) 329, 683, 1173, 1513
BceAI ACGGC 3 cut(s) 63, 100, 596
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 5 cut(s) 31, 201, 474, 593, 673
BfaI CTAG 9 cut(s) 137, 200, 464, 473, 1308, 1385, 1409, 1421, 1598
BglI GCCNNNNNGGC 1 cut(s) 84
BlpI GCTNAGC 2 cut(s) 1030, 1035
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 802
BmgBI CACGTC 1 cut(s) 970
BmgT120I GGNCC 1 cut(s) 952
BmiI GGNNCC 1 cut(s) 1524
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 972
BpmI CTGGAG 1 cut(s) 73
Bpu1102I GCTNAGC 2 cut(s) 1030, 1035
Bpu14I TTCGAA 1 cut(s) 431
BpuEI CTTGAG 2 cut(s) 91, 161
BpuMI CCSGG 1 cut(s) 361
BsaHI GRCGYC 3 cut(s) 279, 364, 866
BsaJI CCNNGG 2 cut(s) 259, 1565
BsaWI WCCGGW 2 cut(s) 1117, 1126
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 3 cut(s) 509, 1001, 1571
Bse118I RCCGGY 1 cut(s) 1117
Bse1I ACTGG 2 cut(s) 56, 1693
Bse3DI GCAATG 2 cut(s) 404, 1269
BseDI CCNNGG 2 cut(s) 259, 1565
BseLI CCNNNNNNNGG 3 cut(s) 509, 1001, 1571
BseMI GCAATG 2 cut(s) 404, 1269
BseMII CTCAG 2 cut(s) 887, 1049
BseNI ACTGG 2 cut(s) 56, 1693
BseRI GAGGAG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 4 cut(s) 794, 1013, 1051, 1261
BseYI CCCAGC 1 cut(s) 648
BshFI GGCC 3 cut(s) 78, 236, 611
BshNI GGYRCC 1 cut(s) 1522
BshTI ACCGGT 1 cut(s) 1117
BsiHKAI GWGCWC 2 cut(s) 398, 604
BsiHKCI CYCGRG 1 cut(s) 802
BsiSI CCGG 3 cut(s) 361, 1118, 1127
BslFI GGGAC 2 cut(s) 348, 468
BslI CCNNNNNNNGG 3 cut(s) 509, 1001, 1571
BsmAI GTCTC 5 cut(s) 31, 201, 474, 593, 673
BsmFI GGGAC 2 cut(s) 348, 468
BsmI GAATGC 2 cut(s) 96, 950
BsnI GGCC 3 cut(s) 78, 236, 611
BsoBI CYCGRG 1 cut(s) 802
Bsp119I TTCGAA 1 cut(s) 431
Bsp1286I GDGCHC 3 cut(s) 398, 536, 604
Bsp143I GATC 7 cut(s) 206, 557, 630, 1083, 1388, 1396, 1457
Bsp1720I GCTNAGC 2 cut(s) 1030, 1035
Bsp19I CCATGG 1 cut(s) 1565
BspANI GGCC 3 cut(s) 78, 236, 611
BspCNI CTCAG 2 cut(s) 886, 1048
BspLI GGNNCC 1 cut(s) 1524
BspPI GGATC 3 cut(s) 552, 638, 1396
BspQI GCTCTTC 1 cut(s) 1374
BspT104I TTCGAA 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 1522
BsrDI GCAATG 2 cut(s) 404, 1269
BsrFI RCCGGY 1 cut(s) 1117
BsrI ACTGG 2 cut(s) 56, 1693
BssAI RCCGGY 1 cut(s) 1117
BssECI CCNNGG 2 cut(s) 259, 1565
BssMI GATC 7 cut(s) 206, 557, 630, 1083, 1388, 1396, 1457
BssNI GRCGYC 3 cut(s) 279, 364, 866
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 1565
Bst2BI CACGAG 1 cut(s) 741
Bst4CI ACNGT 3 cut(s) 504, 952, 1589
Bst6I CTCTTC 2 cut(s) 1374, 1661
BstACI GRCGYC 3 cut(s) 279, 364, 866
BstAPI GCANNNNNTGC 1 cut(s) 1274
BstBI TTCGAA 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 96, 157, 536
BstDEI CTNAG 7 cut(s) 873, 1030, 1035, 1243, 1508, 1545, 1628
BstDSI CCRYGG 1 cut(s) 1565
BstKTI GATC 7 cut(s) 209, 560, 633, 1086, 1391, 1399, 1460
BstMAI GTCTC 5 cut(s) 31, 201, 474, 593, 673
BstMBI GATC 7 cut(s) 206, 557, 630, 1083, 1388, 1396, 1457
BstMWI GCNNNNNNNGC 7 cut(s) 84, 146, 608, 988, 1274, 1313, 1490
BstNSI RCATGY 2 cut(s) 196, 900
BstSCI CCNGG 1 cut(s) 359
BstSLI GKGCMC 1 cut(s) 536
BstV1I GCAGC 4 cut(s) 794, 1013, 1051, 1261
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 1 cut(s) 557
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 3 cut(s) 78, 236, 611
BtgI CCRYGG 1 cut(s) 1565
BtgZI GCGATG 2 cut(s) 424, 1455
BtrI CACGTC 1 cut(s) 970
BtsI GCAGTG 1 cut(s) 1275
BtsIMutI CAGTG 1 cut(s) 1275
Cac8I GCNNGC 3 cut(s) 96, 157, 536
CaiI CAGNNNCTG 2 cut(s) 1274, 1378
Cfr10I RCCGGY 1 cut(s) 1117
Cfr13I GGNCC 1 cut(s) 952
CseI GACGC 3 cut(s) 287, 353, 874
CspAI ACCGGT 1 cut(s) 1117
CspCI CAANNNNNGTGG 2 cut(s) 1251, 1286
DdeI CTNAG 7 cut(s) 873, 1030, 1035, 1243, 1508, 1545, 1628
DpnI GATC 7 cut(s) 208, 559, 632, 1085, 1390, 1398, 1459
DpnII GATC 7 cut(s) 206, 557, 630, 1083, 1388, 1396, 1457
EaeI YGGCCR 2 cut(s) 234, 609
Eam1104I CTCTTC 2 cut(s) 1374, 1661
EarI CTCTTC 2 cut(s) 1374, 1661
EciI GGCGGA 2 cut(s) 102, 304
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 1565
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 952
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 3 cut(s) 1089, 1353, 1355
Eco88I CYCGRG 1 cut(s) 802
EcoICRI GAGCTC 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 1565
EcoT22I ATGCAT 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 1565
FaqI GGGAC 2 cut(s) 348, 468
FriOI GRGCYC 1 cut(s) 398
FspBI CTAG 9 cut(s) 137, 200, 464, 473, 1308, 1385, 1409, 1421, 1598
GsaI CCCAGC 1 cut(s) 652
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 3 cut(s) 78, 236, 611
HapII CCGG 3 cut(s) 361, 1118, 1127
HgaI GACGC 3 cut(s) 287, 353, 874
Hin1I GRCGYC 3 cut(s) 279, 364, 866
HincII GTYRAC 2 cut(s) 1090, 1639
HindII GTYRAC 2 cut(s) 1090, 1639
HinfI GANTC 6 cut(s) 133, 477, 666, 1144, 1230, 1328
HpaI GTTAAC 2 cut(s) 1090, 1639
HpaII CCGG 3 cut(s) 361, 1118, 1127
HphI GGTGA 2 cut(s) 32, 1528
Hpy166II GTNNAC 5 cut(s) 1057, 1090, 1404, 1534, 1639
Hpy188I TCNGA 5 cut(s) 482, 850, 1170, 1204, 1333
Hpy188III TCNNGA 3 cut(s) 178, 628, 834
Hpy8I GTNNAC 5 cut(s) 1057, 1090, 1404, 1534, 1639
Hpy99I CGWCG 2 cut(s) 214, 530
HpyAV CCTTC 9 cut(s) 32, 115, 253, 257, 292, 427, 879, 1113, 1455
HpyCH4III ACNGT 3 cut(s) 504, 952, 1589
HpyCH4IV ACGT 2 cut(s) 617, 969
HpyCH4V TGCA 8 cut(s) 16, 190, 390, 948, 1008, 1067, 1225, 1648
HpyF10VI GCNNNNNNNGC 7 cut(s) 84, 146, 608, 988, 1274, 1313, 1490
HpyF3I CTNAG 7 cut(s) 873, 1030, 1035, 1243, 1508, 1545, 1628
HpySE526I ACGT 2 cut(s) 617, 969
Hsp92I GRCGYC 3 cut(s) 279, 364, 866
KspAI GTTAAC 2 cut(s) 1090, 1639
Kzo9I GATC 7 cut(s) 206, 557, 630, 1083, 1388, 1396, 1457
LguI GCTCTTC 1 cut(s) 1374
LmnI GCTCC 3 cut(s) 512, 599, 1156
Lsp1109I GCAGC 4 cut(s) 794, 1013, 1051, 1261
LweI GCATC 1 cut(s) 401
MaeI CTAG 9 cut(s) 137, 200, 464, 473, 1308, 1385, 1409, 1421, 1598
MaeII ACGT 2 cut(s) 617, 969
MaeIII GTNAC 9 cut(s) 80, 220, 504, 613, 876, 1192, 1540, 1589, 1670
MalI GATC 7 cut(s) 208, 559, 632, 1085, 1390, 1398, 1459
MboI GATC 7 cut(s) 206, 557, 630, 1083, 1388, 1396, 1457
MfeI CAATTG 1 cut(s) 1021
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 3 cut(s) 398, 536, 604
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 3 cut(s) 521, 1021, 1206
MluNI TGGCCA 1 cut(s) 236
MlyI GAGTC 2 cut(s) 675, 1322
MmeI TCCRAC 2 cut(s) 979, 1178
Mox20I TGGCCA 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 18
MscI TGGCCA 1 cut(s) 236
MseI TTAA 6 cut(s) 374, 768, 1089, 1289, 1584, 1638
MslI CAYNNNNRTG 5 cut(s) 21, 191, 230, 409, 1013
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 1394
MspI CCGG 3 cut(s) 361, 1118, 1127
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 1021
Mva1269I GAATGC 2 cut(s) 96, 950
MwoI GCNNNNNNNGC 7 cut(s) 84, 146, 608, 988, 1274, 1313, 1490
NciI CCSGG 1 cut(s) 361
NcoI CCATGG 1 cut(s) 1565
NdeII GATC 7 cut(s) 206, 557, 630, 1083, 1388, 1396, 1457
NlaIV GGNNCC 1 cut(s) 1524
NmuCI GTSAC 5 cut(s) 80, 220, 504, 613, 876
NsiI ATGCAT 1 cut(s) 18
NspI RCATGY 2 cut(s) 196, 900
NspV TTCGAA 1 cut(s) 431
PaeR7I CTCGAG 1 cut(s) 802
PciI ACATGT 2 cut(s) 192, 896
PciSI GCTCTTC 1 cut(s) 1374
PcsI WCGNNNNNNNCGW 1 cut(s) 437
PctI GAATGC 2 cut(s) 96, 950
PfeI GAWTC 4 cut(s) 133, 477, 1144, 1230
PflMI CCANNNNNTGG 2 cut(s) 1001, 1571
PinAI ACCGGT 1 cut(s) 1117
PleI GAGTC 2 cut(s) 674, 1322
PpsI GAGTC 2 cut(s) 674, 1322
PscI ACATGT 2 cut(s) 192, 896
PsiI TTATAA 1 cut(s) 726
Psp124BI GAGCTC 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 1524
PspPI GGNCC 1 cut(s) 952
PspXI VCTCGAGB 1 cut(s) 802
PstNI CAGNNNCTG 2 cut(s) 1274, 1378
PsuI RGATCY 1 cut(s) 557
PvuII CAGCTG 1 cut(s) 1394
RseI CAYNNNNRTG 5 cut(s) 21, 191, 230, 409, 1013
SacI GAGCTC 1 cut(s) 398
SapI GCTCTTC 1 cut(s) 1374
SaqAI TTAA 6 cut(s) 374, 768, 1089, 1289, 1584, 1638
Sau3AI GATC 7 cut(s) 206, 557, 630, 1083, 1388, 1396, 1457
Sau96I GGNCC 1 cut(s) 952
SchI GAGTC 2 cut(s) 675, 1322
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 3 cut(s) 398, 536, 604
SfaNI GCATC 1 cut(s) 401
Sfr274I CTCGAG 1 cut(s) 802
SfuI TTCGAA 1 cut(s) 431
SinI GGWCC 1 cut(s) 952
SlaI CTCGAG 1 cut(s) 802
SmiMI CAYNNNNRTG 5 cut(s) 21, 191, 230, 409, 1013
SmlI CTYRAG 3 cut(s) 70, 176, 802
SmoI CTYRAG 3 cut(s) 70, 176, 802
Sse9I AATT 3 cut(s) 521, 1021, 1206
SspI AATATT 1 cut(s) 999
SspMI CTAG 9 cut(s) 137, 200, 464, 473, 1308, 1385, 1409, 1421, 1598
SstI GAGCTC 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 1565
TaaI ACNGT 3 cut(s) 504, 952, 1589
TaiI ACGT 2 cut(s) 620, 972
TasI AATT 3 cut(s) 521, 1021, 1206
TauI GCSGC 6 cut(s) 68, 101, 382, 385, 404, 440
TfiI GAWTC 4 cut(s) 133, 477, 1144, 1230
Tru1I TTAA 6 cut(s) 374, 768, 1089, 1289, 1584, 1638
Tru9I TTAA 6 cut(s) 374, 768, 1089, 1289, 1584, 1638
TscAI CASTG 1 cut(s) 1275
TseFI GTSAC 5 cut(s) 80, 220, 504, 613, 876
TseI GCWGC 4 cut(s) 782, 1026, 1064, 1274
Tsp45I GTSAC 5 cut(s) 80, 220, 504, 613, 876
TspDTI ATGAA 5 cut(s) 175, 220, 870, 1088, 1126
TspGWI ACGGA 2 cut(s) 357, 525
TspRI CASTG 1 cut(s) 1275
Van91I CCANNNNNTGG 2 cut(s) 1001, 1571
VpaK11BI GGWCC 1 cut(s) 952
XceI RCATGY 2 cut(s) 196, 900
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 802
XspI CTAG 9 cut(s) 137, 200, 464, 473, 1308, 1385, 1409, 1421, 1598
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.