Rmu_sc0032009.1_g000001

Protein NRT1 PTR FAMILY 4.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032009.1
Physical Location & Seq
Forward (+)
1 .. 2513
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032009.1_g000001.1.cds

Sequence Viewer

Length: 1431 bp
ggcctagtcctactcacagtgcaagcccgcttgtcttcactaaagccaccaccgtgcactccggacaatcccaacagtccatgccaagaaattggtggtggaaaagccgggcttctgttcataggtctatacatggtggcgcttggtgttggagggatcaaagggtcattaccaagtcatggagcagagcaatttgatgagagcacaccacaaggaaggaagcagagatcaaccttcttcaacttcttcgtcttctctcttgcttgcggcggcctgattgcggtgacactggtggtgtggattgaagacaacaaagggtgggaatggggtttcggaatctcgaccatcagcatattgttgtctataccagtgtttcttgctggttccactctttacaggaataagataccctgtggaagtcccctaacaaccattctaaaggtcctggccgctgccgcactcaacaaatgcataaccaagaacccaagcaatgccattgccagcatggccgctagcccttcttctccgaacccaatcatcataaagcaaccagcagaccagcctcaaaccgccatcgaactaaaacactccaccaccgaaacccccacgcagagcctcaagttcctaaacagagccgtcctcaacaagcccctgcacgactcgctccaatgcacagtccagcaactagaagaggtcaaaatcgtcctcaaaatccttcccattttcgcctgcacaatcatgctcaactgctgcctcgcccagctctccaccttctccgtccaacaagcctccaccatggacaccaagctcggctccttcaaagtcccgcccgcctccctccccatcttccccgtcgtcttcatcatcatccttgctccactctacgaccagtttatcgtccccttcttccgaaaaaccaccaaatccgaaatgggcatatcccacctccagcgcatcggtatcggactagccctctccatagtcgcaatggccatcgccgccctcgtcgaaatcaagcggaagcgcgtggcctcacgcgccgccatgctcgactccaccgagccgctgcccatcacattcttctggatcgcgctgcagtacttgtttctgggctcggcggacctgttcacgctcgccgggctgctggagtttttcttcaccgaggcgccgagcagcatgaggtcgctggccacgtcgctcacttgggcctctctggccatgggatactacctcagctccgtcatcgtgtccgtcgtgaacgacgtctccggcaagttttccgatcataaatggctagcgggaagcaagttgaacagttatcatctggagaggttctactggctcatgtgtgtgctcagtgggttgaacttcttgcactacctgttctgggcctgccggtataaatacagaacgacgggggcaaataagtaa

Protein Analysis

476

Amino Acids

51.98

Weight (kDa)

9.27

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1266
AccB1I GGYRCC 1 cut(s) 1165
AccB7I CCANNNNNTGG 1 cut(s) 179
AccII CGCG 3 cut(s) 1026, 1038, 1091
AccIII TCCGGA 1 cut(s) 61
AclWI GGATC 2 cut(s) 164, 1094
AcoI YGGCCR 5 cut(s) 447, 507, 990, 1188, 1215
AcyI GRCGYC 2 cut(s) 1166, 1263
AfaI GTAC 1 cut(s) 1100
AfiI CCNNNNNNNGG 3 cut(s) 179, 280, 1387
AgsI TTSAA 5 cut(s) 241, 305, 820, 1312, 1366
AjiI CACGTC 1 cut(s) 1194
AjnI CCWGG 1 cut(s) 444
AleI CACNNNNGTG 1 cut(s) 52
AloI GAACNNNNNNTCC 2 cut(s) 1250, 1282
AluBI AGCT 3 cut(s) 763, 808, 1236
AluI AGCT 3 cut(s) 763, 808, 1236
Alw21I GWGCWC 3 cut(s) 59, 206, 1356
Alw26I GTCTC 1 cut(s) 1270
Alw44I GTGCAC 1 cut(s) 55
AlwI GGATC 2 cut(s) 164, 1094
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 9 cut(s) 271, 447, 507, 990, 1029, 1188, 1206, 1215, 1389
ApaLI GTGCAC 1 cut(s) 55
ApeKI GCWGC 6 cut(s) 452, 750, 1066, 1093, 1141, 1173
AspLEI GCGC 6 cut(s) 142, 954, 1026, 1040, 1093, 1168
AspS9I GGNCC 4 cut(s) 442, 1120, 1206, 1389
AsuC2I CCSGG 2 cut(s) 109, 1138
AsuHPI GGTGA 2 cut(s) 295, 1150
AsuNHI GCTAGC 2 cut(s) 512, 1294
AvaII GGWCC 2 cut(s) 442, 1120
BaeGI GKGCMC 1 cut(s) 59
BalI TGGCCA 3 cut(s) 992, 1190, 1217
BanI GGYRCC 1 cut(s) 1165
BanII GRGCYC 1 cut(s) 1115
BbsI GAAGAC 4 cut(s) 27, 244, 312, 850
Bbv12I GWGCWC 3 cut(s) 59, 206, 1356
BbvCI CCTCAGC 1 cut(s) 1232
BbvI GCAGC 6 cut(s) 439, 737, 1053, 1080, 1128, 1185
BccI CCATC 5 cut(s) 353, 581, 851, 1001, 1079
BceAI ACGGC 1 cut(s) 620
BcgI CGANNNNNNTGC 2 cut(s) 943, 977
BciT130I CCWGG 1 cut(s) 446
BciVI GTATCC 1 cut(s) 1217
BcnI CCSGG 2 cut(s) 109, 1138
BcoDI GTCTC 1 cut(s) 1270
BfaI CTAG 5 cut(s) 5, 513, 686, 968, 1295
BfmI CTRYAG 1 cut(s) 1094
BfoI RGCGCY 2 cut(s) 143, 1169
BfuI GTATCC 1 cut(s) 1217
BglI GCCNNNNNGGC 2 cut(s) 506, 1214
BmcAI AGTACT 1 cut(s) 1100
Bme1390I CCNGG 3 cut(s) 109, 446, 1138
Bme18I GGWCC 2 cut(s) 442, 1120
BmgBI CACGTC 1 cut(s) 1194
BmgT120I GGNCC 4 cut(s) 442, 1120, 1206, 1389
BmiI GGNNCC 3 cut(s) 385, 814, 1167
BmrFI CCNGG 3 cut(s) 109, 446, 1138
BmsI GCATC 1 cut(s) 963
BmtI GCTAGC 2 cut(s) 516, 1298
BpiI GAAGAC 4 cut(s) 27, 244, 312, 850
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BpmI CTGGAG 3 cut(s) 932, 1166, 1346
Bpu10I CCTNAGC 1 cut(s) 1232
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 2 cut(s) 109, 1138
BsaHI GRCGYC 2 cut(s) 1166, 1263
BsaJI CCNNGG 3 cut(s) 795, 1161, 1218
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 4 cut(s) 1220, 1250, 1250, 1280
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 280, 1387
Bse118I RCCGGY 1 cut(s) 1395
Bse1I ACTGG 4 cut(s) 294, 368, 889, 1343
Bse3DI GCAATG 3 cut(s) 495, 496, 993
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 795, 1161, 1218
BseGI GGATG 1 cut(s) 867
BseLI CCNNNNNNNGG 3 cut(s) 179, 280, 1387
BseMI GCAATG 3 cut(s) 495, 496, 993
BseMII CTCAG 2 cut(s) 1246, 1369
BseNI ACTGG 4 cut(s) 294, 368, 889, 1343
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 6 cut(s) 439, 737, 1053, 1080, 1128, 1185
BseYI CCCAGC 1 cut(s) 759
BsgI GTGCAG 2 cut(s) 638, 715
Bsh1236I CGCG 3 cut(s) 1026, 1038, 1091
BshNI GGYRCC 1 cut(s) 1165
BsiHKAI GWGCWC 3 cut(s) 59, 206, 1356
BsiSI CCGG 5 cut(s) 62, 108, 1137, 1269, 1396
BslFI GGGAC 3 cut(s) 405, 809, 884
BslI CCNNNNNNNGG 3 cut(s) 179, 280, 1387
BsmAI GTCTC 1 cut(s) 1270
BsmBI CGTCTC 1 cut(s) 1270
BsmFI GGGAC 3 cut(s) 405, 809, 884
Bsp1286I GDGCHC 4 cut(s) 59, 206, 1115, 1356
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 4 cut(s) 156, 227, 1086, 1282
Bsp19I CCATGG 2 cut(s) 795, 1218
BspCNI CTCAG 2 cut(s) 1245, 1368
BspEI TCCGGA 1 cut(s) 61
BspFNI CGCG 3 cut(s) 1026, 1038, 1091
BspLI GGNNCC 3 cut(s) 385, 814, 1167
BspMAI CTGCAG 1 cut(s) 1098
BspOI GCTAGC 2 cut(s) 516, 1298
BspPI GGATC 2 cut(s) 164, 1094
BspT107I GGYRCC 1 cut(s) 1165
BsrDI GCAATG 3 cut(s) 495, 496, 993
BsrFI RCCGGY 1 cut(s) 1395
BsrI ACTGG 4 cut(s) 294, 368, 889, 1343
BssAI RCCGGY 1 cut(s) 1395
BssECI CCNNGG 3 cut(s) 795, 1161, 1218
BssMI GATC 4 cut(s) 156, 227, 1086, 1282
BssNI GRCGYC 2 cut(s) 1166, 1263
BssT1I CCWWGG 2 cut(s) 795, 1218
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 5 cut(s) 19, 54, 77, 676, 1316
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 2 cut(s) 1166, 1263
BstDEI CTNAG 2 cut(s) 1232, 1355
BstDSI CCRYGG 2 cut(s) 795, 1218
BstF5I GGATG 1 cut(s) 867
BstFNI CGCG 3 cut(s) 1026, 1038, 1091
BstH2I RGCGCY 2 cut(s) 143, 1169
BstHHI GCGC 6 cut(s) 142, 954, 1026, 1040, 1093, 1168
BstKTI GATC 4 cut(s) 159, 230, 1089, 1285
BstMAI GTCTC 1 cut(s) 1270
BstMBI GATC 4 cut(s) 156, 227, 1086, 1282
BstMWI GCNNNNNNNGC 7 cut(s) 455, 506, 661, 998, 1037, 1138, 1214
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 107, 444, 1136
BstSFI CTRYAG 1 cut(s) 1094
BstSLI GKGCMC 1 cut(s) 59
BstUI CGCG 3 cut(s) 1026, 1038, 1091
BstV1I GCAGC 6 cut(s) 439, 737, 1053, 1080, 1128, 1185
BstV2I GAAGAC 4 cut(s) 27, 244, 312, 850
BstXI CCANNNNNNTGG 1 cut(s) 92
BsuI GTATCC 1 cut(s) 1217
BtgI CCRYGG 2 cut(s) 795, 1218
BtgZI GCGATG 1 cut(s) 979
BtrI CACGTC 1 cut(s) 1194
BtsCI GGATG 1 cut(s) 867
BtsIMutI CAGTG 4 cut(s) 24, 287, 375, 1363
CfoI GCGC 6 cut(s) 142, 954, 1026, 1040, 1093, 1168
Cfr10I RCCGGY 1 cut(s) 1395
Cfr13I GGNCC 4 cut(s) 442, 1120, 1206, 1389
Csp6I GTAC 1 cut(s) 1099
CviQI GTAC 1 cut(s) 1099
DdeI CTNAG 2 cut(s) 1232, 1355
DinI GGCGCC 1 cut(s) 1167
DpnI GATC 4 cut(s) 158, 229, 1088, 1284
DpnII GATC 4 cut(s) 156, 227, 1086, 1282
EaeI YGGCCR 5 cut(s) 447, 507, 990, 1188, 1215
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
EciI GGCGGA 1 cut(s) 1133
Eco130I CCWWGG 2 cut(s) 795, 1218
Eco24I GRGCYC 1 cut(s) 1115
Eco47I GGWCC 2 cut(s) 442, 1120
EcoO109I RGGNCCY 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 795, 1218
EcoT22I ATGCAT 1 cut(s) 473
EcoT38I GRGCYC 1 cut(s) 1115
EgeI GGCGCC 1 cut(s) 1167
EheI GGCGCC 1 cut(s) 1167
ErhI CCWWGG 2 cut(s) 795, 1218
Esp3I CGTCTC 1 cut(s) 1270
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 3 cut(s) 405, 809, 884
FauI CCCGC 4 cut(s) 35, 834, 838, 1291
FokI GGATG 1 cut(s) 854
FriOI GRGCYC 1 cut(s) 1115
FspBI CTAG 5 cut(s) 5, 513, 686, 968, 1295
GlaI GCGC 6 cut(s) 141, 953, 1025, 1039, 1092, 1167
GsaI CCCAGC 1 cut(s) 763
GsuI CTGGAG 3 cut(s) 932, 1166, 1346
HaeII RGCGCY 2 cut(s) 143, 1169
HapII CCGG 5 cut(s) 62, 108, 1137, 1269, 1396
HhaI GCGC 6 cut(s) 142, 954, 1026, 1040, 1093, 1168
Hin1I GRCGYC 2 cut(s) 1166, 1263
Hin6I GCGC 6 cut(s) 140, 952, 1024, 1038, 1091, 1166
HinP1I GCGC 6 cut(s) 140, 952, 1024, 1038, 1091, 1166
HinfI GANTC 3 cut(s) 336, 659, 1052
HpaII CCGG 5 cut(s) 62, 108, 1137, 1269, 1396
HphI GGTGA 2 cut(s) 295, 1150
Hpy166II GTNNAC 3 cut(s) 57, 1128, 1258
Hpy188I TCNGA 6 cut(s) 335, 528, 911, 928, 965, 1282
Hpy188III TCNNGA 5 cut(s) 62, 340, 1084, 1255, 1325
Hpy8I GTNNAC 3 cut(s) 57, 1128, 1258
Hpy99I CGWCG 6 cut(s) 857, 1010, 1198, 1256, 1265, 1417
HpyAV CCTTC 7 cut(s) 210, 244, 528, 725, 781, 826, 913
HpyCH4III ACNGT 5 cut(s) 19, 54, 77, 676, 1316
HpyCH4IV ACGT 2 cut(s) 1193, 1263
HpyCH4V TGCA 8 cut(s) 22, 57, 471, 655, 672, 732, 1096, 1375
HpyF10VI GCNNNNNNNGC 7 cut(s) 455, 506, 661, 998, 1037, 1138, 1214
HpyF3I CTNAG 2 cut(s) 1232, 1355
HpySE526I ACGT 2 cut(s) 1193, 1263
Hsp92I GRCGYC 2 cut(s) 1166, 1263
HspAI GCGC 6 cut(s) 140, 952, 1024, 1038, 1091, 1166
KasI GGCGCC 1 cut(s) 1165
Kpn2I TCCGGA 1 cut(s) 61
Kzo9I GATC 4 cut(s) 156, 227, 1086, 1282
LmnI GCTCC 5 cut(s) 182, 669, 818, 880, 1241
Lsp1109I GCAGC 6 cut(s) 439, 737, 1053, 1080, 1128, 1185
LweI GCATC 1 cut(s) 963
MaeI CTAG 5 cut(s) 5, 513, 686, 968, 1295
MaeII ACGT 2 cut(s) 1193, 1263
MaeIII GTNAC 1 cut(s) 283
MalI GATC 4 cut(s) 158, 229, 1088, 1284
MboI GATC 4 cut(s) 156, 227, 1086, 1282
MhlI GDGCHC 4 cut(s) 59, 206, 1115, 1356
MlsI TGGCCA 3 cut(s) 992, 1190, 1217
MluCI AATT 2 cut(s) 90, 191
MluNI TGGCCA 3 cut(s) 992, 1190, 1217
Mly113I GGCGCC 1 cut(s) 1166
MlyI GAGTC 2 cut(s) 653, 1046
MmeI TCCRAC 2 cut(s) 130, 805
Mox20I TGGCCA 3 cut(s) 992, 1190, 1217
Mph1103I ATGCAT 1 cut(s) 473
MroI TCCGGA 1 cut(s) 61
MscI TGGCCA 3 cut(s) 992, 1190, 1217
MslI CAYNNNNRTG 3 cut(s) 52, 737, 1349
Msp20I TGGCCA 3 cut(s) 992, 1190, 1217
MspA1I CMGCKG 2 cut(s) 452, 1066
MspI CCGG 5 cut(s) 62, 108, 1137, 1269, 1396
MspR9I CCNGG 3 cut(s) 109, 446, 1138
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 3 cut(s) 1026, 1038, 1091
MwoI GCNNNNNNNGC 7 cut(s) 455, 506, 661, 998, 1037, 1138, 1214
NarI GGCGCC 1 cut(s) 1166
NciI CCSGG 2 cut(s) 109, 1138
NcoI CCATGG 2 cut(s) 795, 1218
NdeII GATC 4 cut(s) 156, 227, 1086, 1282
NheI GCTAGC 2 cut(s) 512, 1294
NlaIV GGNNCC 3 cut(s) 385, 814, 1167
NmeAIII GCCGAG 3 cut(s) 789, 1094, 1194
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 473
OliI CACNNNNGTG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 5 cut(s) 1002, 1056, 1190, 1251, 1260
PfeI GAWTC 1 cut(s) 336
PflMI CCANNNNNTGG 1 cut(s) 179
PleI GAGTC 2 cut(s) 653, 1046
PluTI GGCGCC 1 cut(s) 1169
PpsI GAGTC 2 cut(s) 653, 1046
PpuMI RGGWCCY 1 cut(s) 442
Psp5II RGGWCCY 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 759
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 3 cut(s) 385, 814, 1167
PspPI GGNCC 4 cut(s) 442, 1120, 1206, 1389
PspPPI RGGWCCY 1 cut(s) 442
PstI CTGCAG 1 cut(s) 1098
RsaI GTAC 1 cut(s) 1100
RsaNI GTAC 1 cut(s) 1099
RseI CAYNNNNRTG 3 cut(s) 52, 737, 1349
Sau3AI GATC 4 cut(s) 156, 227, 1086, 1282
Sau96I GGNCC 4 cut(s) 442, 1120, 1206, 1389
ScaI AGTACT 1 cut(s) 1100
SchI GAGTC 2 cut(s) 653, 1046
ScrFI CCNGG 3 cut(s) 109, 446, 1138
SduI GDGCHC 4 cut(s) 59, 206, 1115, 1356
SfaNI GCATC 1 cut(s) 963
SfcI CTRYAG 1 cut(s) 1094
SfiI GGCCNNNNNGGCC 1 cut(s) 1214
SfoI GGCGCC 1 cut(s) 1167
SinI GGWCC 2 cut(s) 442, 1120
SmiMI CAYNNNNRTG 3 cut(s) 52, 737, 1349
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 2 cut(s) 90, 191
SspDI GGCGCC 1 cut(s) 1165
SspMI CTAG 5 cut(s) 5, 513, 686, 968, 1295
StyD4I CCNGG 3 cut(s) 107, 444, 1136
StyI CCWWGG 2 cut(s) 795, 1218
TaaI ACNGT 5 cut(s) 19, 54, 77, 676, 1316
TaiI ACGT 2 cut(s) 1196, 1266
TaqI TCGA 4 cut(s) 341, 576, 1008, 1050
TasI AATT 2 cut(s) 90, 191
TatI WGTACW 1 cut(s) 1098
TauI GCSGC 8 cut(s) 270, 273, 452, 458, 512, 1001, 1043, 1066
TfiI GAWTC 1 cut(s) 336
TscAI CASTG 4 cut(s) 24, 294, 375, 1363
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 6 cut(s) 452, 750, 1066, 1093, 1141, 1173
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 109, 850
TspGWI ACGGA 3 cut(s) 766, 1228, 1240
TspRI CASTG 4 cut(s) 24, 294, 375, 1363
Van91I CCANNNNNTGG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 55
VpaK11BI GGWCC 2 cut(s) 442, 1120
XcmI CCANNNNNNNNNTGG 4 cut(s) 92, 502, 928, 985
XspI CTAG 5 cut(s) 5, 513, 686, 968, 1295
ZraI GACGTC 1 cut(s) 1264
ZrmI AGTACT 1 cut(s) 1100
Zsp2I ATGCAT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.