Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005625

Physical Location & Seq

Genomic Coordinates Reverse (-)

26296540 .. 26300684

Gene Structure 4145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCGATTGGAGAAACAGAGCAGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCGTCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTTGTGCTATACCTAAGAGAATACATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATTTCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCTCCACTTTTCAAATCTTCCTCATCTCAGCTTCCATCGAGTTTTTGGGATTGATCATACTCACAATTCAAGCTCGGACACCATCCTTAATGCCTCCATCGTGCGATAGTCCCACATGTGAAGAAGTGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAGCTTTGGGTGTGGGAGGGATCAAAGGTTCATTAGCATCTCACGGAGCAGAACAGTTTGATGAGAGTACACCTAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTGGAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGGGGATTCGGTGTTTCTACCATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAAGATTTTATAGGAACAAGATTCCATGTGGAAGTCCTCTCACCACAATCTTGAAGGTTCTTCTTGCGGCTTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGCGAGTATGTCCGTGAGTCCCTCAAATCATTGCGTATCAAAGGGGAAAAAAGAAGTTGAATCACAAGGAGAATTGGAAAAGCCACGTCAAGAAGAAGCTTTGCCTCCTCGGGCACAACTAACTAACAGTTTGAAAGTATTAAATGGAGCTGCGGATGAAAAACCTGTCCATAGATTGTTAGAATGCACAGTCCAACAAGTGGAAGATGTGAAGATTGTCTTGAAAATGCTTCCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCCGTCCAACAAGCTGCTTCCATGAACACAAAGATAGGAAGCCTAAAGATACCTCCAGCTTCCTTACCGATCTTCCCCGTCGTTTTCATAATGATCCTCGCACCTATCTACGACCATCTCATTATCCCATTCGCTAGAAAAGCTACCAAGACCGAAACAGGAGTCACTCATCTACAAAGAATCGGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTAGTTGAGATTAAACGAAAGGGAGTGGCTAAAGACTCCGGCTTGCTTGACTCGAAAGAAACCTTACCCGTGACTTTCCTATGGATCGCACTTCAGTATCTTTTCCTAGGGTCAGCCGATCTATTCACACTAGCTGGACTACTAGAGTATTTCTTCACGGAAGCACCTTCCTCAATGAGATCTCTCGCAACATCGCTCTCGTGGGCTTCTTTGGCTATGGGGTATTACCTAAGCTCAGTGATCGTGTCCATAGTAAACAGCATCACAGGAAGCTCAGGGAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGTTACAAACTAGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCACTACCTCTTTTGGGCAATGCGTTACAAGTATAGATCAACTGGTTCAAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0010119 GO:0010876 GO:0015075 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0016020 GO:0022857 GO:0033036 GO:0034220 GO:0043207 GO:0044464 GO:0046864 GO:0046865 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0080168 GO:0090440 GO:0098656 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

585

Amino Acids

63.98

Weight (kDa)

8.81

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	97 - 541	8.4e-112	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27040 AT1G27040 AT1G27040 AT1G69850
fragaria_vesca	FvH4_4g32040 FvH4_4g32040 FvH4_4g32040
malus_domestica	MD13G1079300.v1.1 MD16G1079100.v1.1
prunus_persica	Prupe.1G267500_v2.0.a1 Prupe.1G267500_v2.0.a1 Prupe.1G267500_v2.0.a1
pyrus_communis	pycom13g06900 pycom16g06840
rosa_chinensis	RchiOBHm_Chr4g0440681
rosa_laevigata	RLG00000006159
rosa_multiflora	Rmu_co8303529.1_g000001 Rmu_sc0008018.1_g000011 Rmu_sc0023337.1_g000001 Rmu_sc0032009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381490
rosa_rugosa	Rorug04G0327500 Rorug04G0327500
rosa_samantha	Rh4AG379200 Rh4BG392000 Rh4CG406800 Rh4DG385700
rosa_wichuraiana	Rw4G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	1012
AciI	CCGC	5 cut(s)	93, 767, 809, 965, 1319
AclI	AACGTT	1 cut(s)	548
AclWI	GGATC	4 cut(s)	479, 706, 1189, 1421
AcuI	CTGAAG	1 cut(s)	1406
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	446, 520
AfiI	CCNNNNNNNGG	2 cut(s)	1012, 1714
AflIII	ACRYGT	2 cut(s)	186, 395
AgsI	TTSAA	8 cut(s)	293, 350, 754, 801, 872, 946, 1036, 1749
AhlI	ACTAGT	1 cut(s)	589
AjiI	CACGTC	1 cut(s)	899
AloI	GAACNNNNNNTCC	2 cut(s)	463, 495
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	3 cut(s)	25, 195, 679
AlwI	GGATC	4 cut(s)	479, 706, 1189, 1421
Ama87I	CYCGRG	2 cut(s)	787, 921
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	7 cut(s)	59, 422, 783, 962, 1115, 1325, 1688
ArsI	GACNNNNNNTTYG	2 cut(s)	1248, 1280
AspA2I	CCTAGG	1 cut(s)	1435
AsuHPI	GGTGA	2 cut(s)	208, 733
AsuII	TTCGAA	1 cut(s)	416
AvaI	CYCGRG	2 cut(s)	787, 921
AvrII	CCTAGG	1 cut(s)	1435
BaeGI	GKGCMC	2 cut(s)	233, 928
BaeI	ACNNNNGTAYC	2 cut(s)	1409, 1442
BauI	CACGAG	1 cut(s)	1528
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	7 cut(s)	71, 434, 770, 949, 1102, 1337, 1700
BccI	CCATC	7 cut(s)	21, 202, 323, 370, 385, 627, 1224
BceAI	ACGGC	2 cut(s)	47, 57
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	3 cut(s)	25, 195, 679
BcuI	ACTAGT	1 cut(s)	589
BfaI	CTAG	9 cut(s)	131, 245, 590, 1236, 1331, 1436, 1460, 1472, 1652
BglII	AGATCT	1 cut(s)	1508
BisI	GCNGC	9 cut(s)	60, 93, 423, 768, 784, 963, 1116, 1326, 1689
BlnI	CCTAGG	1 cut(s)	1435
BlpI	GCTNAGC	2 cut(s)	1081, 1086
BlsI	GCNGC	9 cut(s)	61, 94, 424, 769, 785, 964, 1117, 1327, 1690
BmeT110I	CYCGRG	2 cut(s)	787, 921
BmgBI	CACGTC	1 cut(s)	899
BmsI	GCATC	3 cut(s)	417, 497, 1599
BpiI	GAAGAC	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	1140
Bpu10I	CCTNAGC	2 cut(s)	1559, 1603
Bpu1102I	GCTNAGC	2 cut(s)	1081, 1086
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	7
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	4 cut(s)	253, 920, 1435, 1616
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	1012, 1714
Bse1I	ACTGG	1 cut(s)	1747
Bse3DI	GCAATG	5 cut(s)	660, 811, 841, 1320, 1725
BseDI	CCNNGG	4 cut(s)	253, 920, 1435, 1616
BseGI	GGATG	3 cut(s)	362, 638, 973
BseLI	CCNNNNNNNGG	2 cut(s)	1012, 1714
BseMI	GCAATG	5 cut(s)	660, 811, 841, 1320, 1725
BseMII	CTCAG	5 cut(s)	321, 1100, 1578, 1617, 1636
BseNI	ACTGG	1 cut(s)	1747
BseRI	GAGGAG	2 cut(s)	242, 909
BseSI	GKGCMC	2 cut(s)	233, 928
BseXI	GCAGC	7 cut(s)	71, 434, 770, 949, 1102, 1337, 1700
BsgI	GTGCAG	1 cut(s)	1707
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	589
BsiHKCI	CYCGRG	2 cut(s)	787, 921
BsiSI	CCGG	1 cut(s)	1368
BslFI	GGGAC	2 cut(s)	375, 816
BslI	CCNNNNNNNGG	2 cut(s)	1012, 1714
BsmAI	GTCTC	3 cut(s)	25, 195, 679
BsmBI	CGTCTC	1 cut(s)	679
BsmFI	GGGAC	2 cut(s)	375, 816
BsmI	GAATGC	2 cut(s)	151, 1001
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	2 cut(s)	787, 921
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	3 cut(s)	233, 589, 928
Bsp1720I	GCTNAGC	2 cut(s)	1081, 1086
BspACI	CCGC	5 cut(s)	93, 767, 809, 965, 1319
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	5 cut(s)	320, 1099, 1577, 1616, 1635
BspPI	GGATC	4 cut(s)	479, 706, 1189, 1421
BspT104I	TTCGAA	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	5 cut(s)	660, 811, 841, 1320, 1725
BsrI	ACTGG	1 cut(s)	1747
BssECI	CCNNGG	4 cut(s)	253, 920, 1435, 1616
BssNI	GRCGYC	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	1528
BssT1I	CCWWGG	2 cut(s)	1435, 1616
Bst2BI	CACGAG	1 cut(s)	1528
Bst4CI	ACNGT	6 cut(s)	80, 507, 941, 1003, 1076, 1643
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	4 cut(s)	86, 90, 1057, 1373
BstF5I	GGATG	3 cut(s)	362, 638, 973
BstMAI	GTCTC	3 cut(s)	25, 195, 679
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 584, 593, 1241, 1325, 1541
BstNSI	RCATGY	4 cut(s)	88, 184, 190, 399
BstSLI	GKGCMC	2 cut(s)	233, 928
BstV1I	GCAGC	7 cut(s)	71, 434, 770, 949, 1102, 1337, 1700
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	1508
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	1508
BsuRI	GGCC	1 cut(s)	72
BtgZI	GCGATG	2 cut(s)	440, 1506
BtrI	CACGTC	1 cut(s)	899
BtsCI	GGATG	3 cut(s)	362, 638, 973
BtsIMutI	CAGTG	1 cut(s)	1572
Cac8I	GCNNGC	4 cut(s)	86, 90, 1057, 1373
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	445, 519
CviAII	CATG	8 cut(s)	85, 181, 187, 226, 396, 726, 1066, 1123
CviQI	GTAC	2 cut(s)	445, 519
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	1435, 1616
Eco31I	GGTCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	1406
Eco88I	CYCGRG	2 cut(s)	787, 921
EcoT14I	CCWWGG	2 cut(s)	1435, 1616
ErhI	CCWWGG	2 cut(s)	1435, 1616
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	8 cut(s)	88, 184, 190, 229, 399, 729, 1069, 1126
FalI	AAGNNNNNCTT	2 cut(s)	1016, 1048
FaqI	GGGAC	2 cut(s)	375, 816
FatI	CATG	8 cut(s)	84, 180, 186, 225, 395, 725, 1065, 1122
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	9 cut(s)	60, 93, 423, 768, 784, 963, 1116, 1326, 1689
FokI	GGATG	3 cut(s)	349, 645, 980
Fsp4HI	GCNGC	9 cut(s)	60, 93, 423, 768, 784, 963, 1116, 1326, 1689
FspBI	CTAG	9 cut(s)	131, 245, 590, 1236, 1331, 1436, 1460, 1472, 1652
GluI	GCNGC	9 cut(s)	60, 93, 423, 768, 784, 963, 1116, 1326, 1689
GsuI	CTGGAG	1 cut(s)	1140
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	1368
HgaI	GACGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	8 cut(s)	88, 184, 190, 229, 399, 729, 1069, 1126
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HindIII	AAGCTT	1 cut(s)	909
HinfI	GANTC	9 cut(s)	127, 645, 721, 829, 872, 1263, 1281, 1364, 1379
HpaII	CCGG	1 cut(s)	1368
HphI	GGTGA	2 cut(s)	208, 733
Hpy166II	GTNNAC	3 cut(s)	521, 546, 1585
Hpy188I	TCNGA	6 cut(s)	271, 357, 534, 1047, 1286, 1625
Hpy188III	TCNNGA	7 cut(s)	24, 696, 702, 751, 902, 1033, 1749
Hpy8I	GTNNAC	3 cut(s)	521, 546, 1585
Hpy99I	CGWCG	2 cut(s)	275, 1184
HpyAV	CCTTC	4 cut(s)	26, 412, 748, 1506
HpyCH4III	ACNGT	6 cut(s)	80, 507, 941, 1003, 1076, 1643
HpyCH4IV	ACGT	4 cut(s)	213, 548, 602, 898
HpyCH4V	TGCA	6 cut(s)	184, 999, 1059, 1325, 1688, 1702
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 584, 593, 1241, 1325, 1541
HpySE526I	ACGT	4 cut(s)	213, 548, 602, 898
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	8 cut(s)	88, 184, 190, 229, 399, 729, 1069, 1126
Ksp22I	TGATCA	1 cut(s)	333
LmnI	GCTCC	3 cut(s)	497, 584, 959
LpnPI	CCDG	9 cut(s)	681, 990, 1170, 1245, 1381, 1449, 1581, 1590, 1728
Lsp1109I	GCAGC	7 cut(s)	71, 434, 770, 949, 1102, 1337, 1700
LweI	GCATC	3 cut(s)	417, 497, 1599
MaeI	CTAG	9 cut(s)	131, 245, 590, 1236, 1331, 1436, 1460, 1472, 1652
MaeII	ACGT	4 cut(s)	213, 548, 602, 898
MaeIII	GTNAC	7 cut(s)	74, 214, 598, 1264, 1399, 1643, 1724
MflI	RGATCY	1 cut(s)	1508
MhlI	GDGCHC	3 cut(s)	233, 589, 928
MluCI	AATT	3 cut(s)	220, 345, 884
MlyI	GAGTC	4 cut(s)	838, 1272, 1358, 1373
MmeI	TCCRAC	4 cut(s)	294, 512, 1030, 1132
MseI	TTAA	6 cut(s)	368, 555, 777, 953, 1071, 1341
MslI	CAYNNNNRTG	2 cut(s)	185, 1064
MspI	CCGG	1 cut(s)	1368
Mva1269I	GAATGC	2 cut(s)	151, 1001
MwoI	GCNNNNNNNGC	6 cut(s)	140, 584, 593, 1241, 1325, 1541
NlaIII	CATG	8 cut(s)	88, 184, 190, 229, 399, 729, 1069, 1126
NmuCI	GTSAC	5 cut(s)	74, 214, 598, 1264, 1399
NspI	RCATGY	4 cut(s)	88, 184, 190, 399
NspV	TTCGAA	1 cut(s)	416
PaeI	GCATGC	1 cut(s)	88
PaeR7I	CTCGAG	1 cut(s)	787
PciI	ACATGT	2 cut(s)	186, 395
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PctI	GAATGC	2 cut(s)	151, 1001
PfeI	GAWTC	5 cut(s)	127, 645, 721, 872, 1281
PflMI	CCANNNNNTGG	1 cut(s)	1012
PkrI	GCNGC	9 cut(s)	61, 94, 424, 769, 785, 964, 1117, 1327, 1690
PleI	GAGTC	4 cut(s)	837, 1271, 1358, 1373
PpsI	GAGTC	4 cut(s)	837, 1271, 1358, 1373
PscI	ACATGT	2 cut(s)	186, 395
Psp1406I	AACGTT	1 cut(s)	548
PspXI	VCTCGAGB	1 cut(s)	787
PsrI	GAACNNNNNNTAC	2 cut(s)	1281, 1313
PsuI	RGATCY	1 cut(s)	1508
RsaI	GTAC	2 cut(s)	446, 520
RsaNI	GTAC	2 cut(s)	445, 519
RseI	CAYNNNNRTG	2 cut(s)	185, 1064
SaqAI	TTAA	6 cut(s)	368, 555, 777, 953, 1071, 1341
SatI	GCNGC	9 cut(s)	60, 93, 423, 768, 784, 963, 1116, 1326, 1689
SchI	GAGTC	4 cut(s)	838, 1272, 1358, 1373
SduI	GDGCHC	3 cut(s)	233, 589, 928
SfaNI	GCATC	3 cut(s)	417, 497, 1599
Sfr274I	CTCGAG	1 cut(s)	787
SfuI	TTCGAA	1 cut(s)	416
SlaI	CTCGAG	1 cut(s)	787
SmiMI	CAYNNNNRTG	2 cut(s)	185, 1064
SmlI	CTYRAG	2 cut(s)	22, 787
SmoI	CTYRAG	2 cut(s)	22, 787
SpeI	ACTAGT	1 cut(s)	589
SphI	GCATGC	1 cut(s)	88
Sse9I	AATT	3 cut(s)	220, 345, 884
SsiI	CCGC	5 cut(s)	93, 767, 809, 965, 1319
SspMI	CTAG	9 cut(s)	131, 245, 590, 1236, 1331, 1436, 1460, 1472, 1652
StyI	CCWWGG	2 cut(s)	1435, 1616
TaaI	ACNGT	6 cut(s)	80, 507, 941, 1003, 1076, 1643
TaiI	ACGT	4 cut(s)	216, 551, 605, 901
TaqI	TCGA	5 cut(s)	318, 416, 788, 1304, 1382
TaqII	GACCGA	1 cut(s)	1268
TasI	AATT	3 cut(s)	220, 345, 884
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	2 cut(s)	95, 770
TfiI	GAWTC	5 cut(s)	127, 645, 721, 872, 1281
Tru1I	TTAA	6 cut(s)	368, 555, 777, 953, 1071, 1341
Tru9I	TTAA	6 cut(s)	368, 555, 777, 953, 1071, 1341
TscAI	CASTG	1 cut(s)	1572
TseFI	GTSAC	5 cut(s)	74, 214, 598, 1264, 1399
TseI	GCWGC	7 cut(s)	59, 422, 783, 962, 1115, 1325, 1688
Tsp45I	GTSAC	5 cut(s)	74, 214, 598, 1264, 1399
TspDTI	ATGAA	5 cut(s)	214, 471, 984, 1139, 1177
TspGWI	ACGGA	4 cut(s)	510, 814, 1093, 1502
TspRI	CASTG	1 cut(s)	1572
Van91I	CCANNNNNTGG	1 cut(s)	1012
XceI	RCATGY	4 cut(s)	88, 184, 190, 399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	787
XmaJI	CCTAGG	1 cut(s)	1435
XspI	CTAG	9 cut(s)	131, 245, 590, 1236, 1331, 1436, 1460, 1472, 1652
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.