Rh4CG406800

Protein NRT1 PTR FAMILY 4.6-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
65351625 .. 65356173
4549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG406800.1

Sequence Viewer

Length: 1437 bp
ATGTTACAGGGTTTAGTCCTACTCACAGTGCAAGCCCGCTTGCCTTCACTAAAGCCACCAGCGTGCACTCCGGACAATCCCAACAGTCCATGCCAAGAAATTGGTGGTGGAAAAGCCGGGCTGCTGTTCATAGGTCTATACATGGTGGCGCTCGGTGTTGGAGGGATCAAAGGGTCATTACCAAGTCATGGAGCAGAGCAATTTGATGAGAGCACACCACAAGGAAGGAAGCAGAGATCAACCTTCTTCAACTTCTTCGTCTTCTCTCTCGCTTGCGGCGGCCTGATTGCGGTGACACTAGTGGTGTGGATTGAAGACAACAAAGGGTGGGAATGGGGTTTCGGAATCTCGACCATCAGCATATTGTTGTCTATACCAGTGTTTCTTGCTGGCTCCACTCTTTACAGGAATAAGATACCCTGTGGAAGTCCCCTAACAACCATTCTAAAGGTCCTGGCCGCTGCCGCACTCAACAAATGCATAACCAAGAGCCAAAGCAATGCCATTGCCAGCATGGCCGCTAGCCCTTCTTCTCCGAACCCAATCATCATAAGGCAACCAGACCAGCCTCAAACCGCCATCGAACTAAAACACTCCACCACCGAAACCCCCACGCAGAGCCTCAAGTTCCTAAACAGAGCCGTCCTCAACAAGCCCCTCCACGACTCGCTCCAATGCACAGTCCAGCAACTTGAAGAGGTCAAAATTGTCCTCAAAATCCTTCCCATTTTCGCCTGCACAATCATGCTCAACTGCTGCCTCGCTCAGCTCTCCACCTTCTCCGTCCAACAAGCCTCCACCATGGACACCAAGCTCGGCTCCTTCAAAGTCCCGCCCGCCTCCCTCCCCATCTTCCCCGTCGTCTTCATCATCATCCTTGCTCCACTCTACGACCAGTTTATCGTCCCCTTCTTCCGAAAAGCCACCAAATCCGAAATGGGCATATCCCACCTCCAGCGCATCGGTATCGGACTAGCCCTCTCCATAGTCGCAATGGCCATCGCCGCCCTCGTCGAAATCAAGCGGAAGCGCGTGGCCTCACGCGCCGCCATGCTCGACTCCACCGAGCCGCTGCCCATCACATTCTTCTGGATCGCGCTGCAGTACTTGTTTCTGGGCTCGGCGGACCTGTTCACGCTAGCCGGGCTGTTGGAGTTTTTCTTCACCGAGGCGCCGAGCAGCATGAGGTCGCTGGCCACGTCGCTCACTTGGGCCTCTCTGGCCATGGGATACTACCTCAGCTCCGTCATCGTCTCCGTCGTGAACGACGTCTCCGGCAAGTTTTCCGATCACAAATGGCTAGCGGGAAGCAAGTTGAACAGTTATCATCTGGAGAGGTTCTACTGGCTCATGTGTGTGCTCAGTGGGTTGAACTTCTTGCACTACCTGTTCTGGGCCTGCCGGTATAAATACAGAACGACGGGGGCAAATAGGTAA

Protein Analysis

478

Amino Acids

52.29

Weight (kDa)

9.29

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 3 - 434 1.1e-105 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1272
AccB1I GGYRCC 1 cut(s) 1171
AccB7I CCANNNNNTGG 1 cut(s) 188
AccII CGCG 3 cut(s) 1032, 1044, 1097
AccIII TCCGGA 1 cut(s) 70
AclWI GGATC 2 cut(s) 173, 1100
AcoI YGGCCR 5 cut(s) 456, 516, 996, 1194, 1221
AcyI GRCGYC 2 cut(s) 1172, 1269
AfaI GTAC 1 cut(s) 1106
AfiI CCNNNNNNNGG 3 cut(s) 188, 289, 1393
AgsI TTSAA 6 cut(s) 250, 314, 695, 826, 1318, 1372
AhlI ACTAGT 1 cut(s) 298
AjiI CACGTC 1 cut(s) 1200
AjnI CCWGG 1 cut(s) 453
AleI CACNNNNGTG 1 cut(s) 61
AloI GAACNNNNNNTCC 2 cut(s) 1256, 1288
AluBI AGCT 3 cut(s) 769, 814, 1242
AluI AGCT 3 cut(s) 769, 814, 1242
Alw21I GWGCWC 3 cut(s) 68, 215, 1362
Alw26I GTCTC 2 cut(s) 1258, 1276
Alw44I GTGCAC 1 cut(s) 64
AlwI GGATC 2 cut(s) 173, 1100
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 9 cut(s) 280, 456, 516, 996, 1035, 1194, 1212, 1221, 1395
ApaLI GTGCAC 1 cut(s) 64
ApeKI GCWGC 6 cut(s) 121, 461, 756, 1072, 1099, 1179
AspLEI GCGC 6 cut(s) 151, 960, 1032, 1046, 1099, 1174
AspS9I GGNCC 4 cut(s) 451, 1126, 1212, 1395
AsuC2I CCSGG 2 cut(s) 118, 1144
AsuHPI GGTGA 2 cut(s) 304, 1156
AsuNHI GCTAGC 3 cut(s) 521, 1138, 1300
AvaII GGWCC 2 cut(s) 451, 1126
BaeGI GKGCMC 1 cut(s) 68
BalI TGGCCA 3 cut(s) 998, 1196, 1223
BanI GGYRCC 1 cut(s) 1171
BanII GRGCYC 1 cut(s) 1121
BbsI GAAGAC 3 cut(s) 253, 321, 856
Bbv12I GWGCWC 3 cut(s) 68, 215, 1362
BbvCI CCTCAGC 1 cut(s) 1238
BbvI GCAGC 6 cut(s) 108, 448, 743, 1059, 1086, 1191
BccI CCATC 5 cut(s) 362, 587, 857, 1007, 1085
BceAI ACGGC 1 cut(s) 626
BcgI CGANNNNNNTGC 2 cut(s) 949, 983
BciT130I CCWGG 1 cut(s) 455
BciVI GTATCC 1 cut(s) 1223
BcnI CCSGG 2 cut(s) 118, 1144
BcoDI GTCTC 2 cut(s) 1258, 1276
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 5 cut(s) 299, 522, 974, 1139, 1301
BfmI CTRYAG 1 cut(s) 1100
BfoI RGCGCY 2 cut(s) 152, 1175
BfuI GTATCC 1 cut(s) 1223
BglI GCCNNNNNGGC 2 cut(s) 515, 1220
BlpI GCTNAGC 1 cut(s) 765
BmcAI AGTACT 1 cut(s) 1106
Bme1390I CCNGG 3 cut(s) 118, 455, 1144
Bme18I GGWCC 2 cut(s) 451, 1126
BmgBI CACGTC 1 cut(s) 1200
BmgT120I GGNCC 4 cut(s) 451, 1126, 1212, 1395
BmiI GGNNCC 3 cut(s) 394, 820, 1173
BmrFI CCNGG 3 cut(s) 118, 455, 1144
BmsI GCATC 1 cut(s) 969
BmtI GCTAGC 3 cut(s) 525, 1142, 1304
BpiI GAAGAC 3 cut(s) 253, 321, 856
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 2 cut(s) 938, 1352
Bpu10I CCTNAGC 1 cut(s) 1238
Bpu1102I GCTNAGC 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 2 cut(s) 118, 1144
BsaHI GRCGYC 2 cut(s) 1172, 1269
BsaJI CCNNGG 3 cut(s) 801, 1167, 1224
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 4 cut(s) 1226, 1256, 1256, 1286
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 289, 1393
Bse118I RCCGGY 1 cut(s) 1401
Bse1I ACTGG 3 cut(s) 377, 895, 1349
Bse3DI GCAATG 3 cut(s) 504, 505, 999
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 3 cut(s) 801, 1167, 1224
BseGI GGATG 1 cut(s) 873
BseLI CCNNNNNNNGG 3 cut(s) 188, 289, 1393
BseMI GCAATG 3 cut(s) 504, 505, 999
BseMII CTCAG 3 cut(s) 779, 1252, 1375
BseNI ACTGG 3 cut(s) 377, 895, 1349
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 6 cut(s) 108, 448, 743, 1059, 1086, 1191
BsgI GTGCAG 1 cut(s) 721
Bsh1236I CGCG 3 cut(s) 1032, 1044, 1097
BshFI GGCC 9 cut(s) 282, 458, 518, 998, 1037, 1196, 1214, 1223, 1397
BshNI GGYRCC 1 cut(s) 1171
BsiHKAI GWGCWC 3 cut(s) 68, 215, 1362
BsiSI CCGG 5 cut(s) 71, 117, 1143, 1275, 1402
BslFI GGGAC 3 cut(s) 414, 815, 890
BslI CCNNNNNNNGG 3 cut(s) 188, 289, 1393
BsmAI GTCTC 2 cut(s) 1258, 1276
BsmBI CGTCTC 2 cut(s) 1258, 1276
BsmFI GGGAC 3 cut(s) 414, 815, 890
BsnI GGCC 9 cut(s) 282, 458, 518, 998, 1037, 1196, 1214, 1223, 1397
Bsp1286I GDGCHC 4 cut(s) 68, 215, 1121, 1362
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 4 cut(s) 165, 236, 1092, 1288
Bsp1720I GCTNAGC 1 cut(s) 765
Bsp19I CCATGG 2 cut(s) 801, 1224
BspANI GGCC 9 cut(s) 282, 458, 518, 998, 1037, 1196, 1214, 1223, 1397
BspCNI CTCAG 3 cut(s) 778, 1251, 1374
BspEI TCCGGA 1 cut(s) 70
BspFNI CGCG 3 cut(s) 1032, 1044, 1097
BspLI GGNNCC 3 cut(s) 394, 820, 1173
BspMAI CTGCAG 1 cut(s) 1104
BspOI GCTAGC 3 cut(s) 525, 1142, 1304
BspPI GGATC 2 cut(s) 173, 1100
BspT107I GGYRCC 1 cut(s) 1171
BsrDI GCAATG 3 cut(s) 504, 505, 999
BsrFI RCCGGY 1 cut(s) 1401
BsrI ACTGG 3 cut(s) 377, 895, 1349
BssAI RCCGGY 1 cut(s) 1401
BssECI CCNNGG 3 cut(s) 801, 1167, 1224
BssMI GATC 4 cut(s) 165, 236, 1092, 1288
BssNI GRCGYC 2 cut(s) 1172, 1269
BssT1I CCWWGG 2 cut(s) 801, 1224
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 4 cut(s) 28, 86, 682, 1322
Bst6I CTCTTC 1 cut(s) 690
BstACI GRCGYC 2 cut(s) 1172, 1269
BstDEI CTNAG 3 cut(s) 765, 1238, 1361
BstDSI CCRYGG 2 cut(s) 801, 1224
BstF5I GGATG 1 cut(s) 873
BstFNI CGCG 3 cut(s) 1032, 1044, 1097
BstH2I RGCGCY 2 cut(s) 152, 1175
BstHHI GCGC 6 cut(s) 151, 960, 1032, 1046, 1099, 1174
BstKTI GATC 4 cut(s) 168, 239, 1095, 1291
BstMAI GTCTC 2 cut(s) 1258, 1276
BstMBI GATC 4 cut(s) 165, 236, 1092, 1288
BstMWI GCNNNNNNNGC 6 cut(s) 464, 515, 1004, 1043, 1144, 1220
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 116, 453, 1142
BstSFI CTRYAG 1 cut(s) 1100
BstSLI GKGCMC 1 cut(s) 68
BstUI CGCG 3 cut(s) 1032, 1044, 1097
BstV1I GCAGC 6 cut(s) 108, 448, 743, 1059, 1086, 1191
BstV2I GAAGAC 3 cut(s) 253, 321, 856
BstXI CCANNNNNNTGG 1 cut(s) 101
BsuI GTATCC 1 cut(s) 1223
BsuRI GGCC 9 cut(s) 282, 458, 518, 998, 1037, 1196, 1214, 1223, 1397
BtgI CCRYGG 2 cut(s) 801, 1224
BtgZI GCGATG 1 cut(s) 985
BtrI CACGTC 1 cut(s) 1200
BtsCI GGATG 1 cut(s) 873
BtsIMutI CAGTG 3 cut(s) 33, 384, 1369
CfoI GCGC 6 cut(s) 151, 960, 1032, 1046, 1099, 1174
Cfr10I RCCGGY 1 cut(s) 1401
Cfr13I GGNCC 4 cut(s) 451, 1126, 1212, 1395
Csp6I GTAC 1 cut(s) 1105
CviQI GTAC 1 cut(s) 1105
DdeI CTNAG 3 cut(s) 765, 1238, 1361
DinI GGCGCC 1 cut(s) 1173
DpnI GATC 4 cut(s) 167, 238, 1094, 1290
DpnII GATC 4 cut(s) 165, 236, 1092, 1288
EaeI YGGCCR 5 cut(s) 456, 516, 996, 1194, 1221
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
EciI GGCGGA 1 cut(s) 1139
Eco130I CCWWGG 2 cut(s) 801, 1224
Eco24I GRGCYC 1 cut(s) 1121
Eco47I GGWCC 2 cut(s) 451, 1126
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 801, 1224
EcoT22I ATGCAT 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 1121
EgeI GGCGCC 1 cut(s) 1173
EheI GGCGCC 1 cut(s) 1173
ErhI CCWWGG 2 cut(s) 801, 1224
Esp3I CGTCTC 2 cut(s) 1258, 1276
FaqI GGGAC 3 cut(s) 414, 815, 890
FauI CCCGC 4 cut(s) 44, 840, 844, 1297
FokI GGATG 1 cut(s) 860
FriOI GRGCYC 1 cut(s) 1121
FspBI CTAG 5 cut(s) 299, 522, 974, 1139, 1301
GlaI GCGC 6 cut(s) 150, 959, 1031, 1045, 1098, 1173
GsuI CTGGAG 2 cut(s) 938, 1352
HaeII RGCGCY 2 cut(s) 152, 1175
HaeIII GGCC 9 cut(s) 282, 458, 518, 998, 1037, 1196, 1214, 1223, 1397
HapII CCGG 5 cut(s) 71, 117, 1143, 1275, 1402
HhaI GCGC 6 cut(s) 151, 960, 1032, 1046, 1099, 1174
Hin1I GRCGYC 2 cut(s) 1172, 1269
Hin6I GCGC 6 cut(s) 149, 958, 1030, 1044, 1097, 1172
HinP1I GCGC 6 cut(s) 149, 958, 1030, 1044, 1097, 1172
HinfI GANTC 3 cut(s) 345, 665, 1058
HpaII CCGG 5 cut(s) 71, 117, 1143, 1275, 1402
HphI GGTGA 2 cut(s) 304, 1156
Hpy166II GTNNAC 3 cut(s) 66, 1134, 1264
Hpy188I TCNGA 6 cut(s) 344, 537, 917, 934, 971, 1288
Hpy188III TCNNGA 5 cut(s) 71, 349, 1090, 1261, 1331
Hpy8I GTNNAC 3 cut(s) 66, 1134, 1264
Hpy99I CGWCG 6 cut(s) 863, 1016, 1204, 1262, 1271, 1423
HpyAV CCTTC 8 cut(s) 54, 219, 253, 537, 731, 787, 832, 919
HpyCH4III ACNGT 4 cut(s) 28, 86, 682, 1322
HpyCH4IV ACGT 2 cut(s) 1199, 1269
HpyCH4V TGCA 7 cut(s) 31, 66, 480, 678, 738, 1102, 1381
HpyF10VI GCNNNNNNNGC 6 cut(s) 464, 515, 1004, 1043, 1144, 1220
HpyF3I CTNAG 3 cut(s) 765, 1238, 1361
HpySE526I ACGT 2 cut(s) 1199, 1269
Hsp92I GRCGYC 2 cut(s) 1172, 1269
HspAI GCGC 6 cut(s) 149, 958, 1030, 1044, 1097, 1172
KasI GGCGCC 1 cut(s) 1171
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 4 cut(s) 165, 236, 1092, 1288
LmnI GCTCC 6 cut(s) 191, 398, 675, 824, 886, 1247
Lsp1109I GCAGC 6 cut(s) 108, 448, 743, 1059, 1086, 1191
LweI GCATC 1 cut(s) 969
MaeI CTAG 5 cut(s) 299, 522, 974, 1139, 1301
MaeII ACGT 2 cut(s) 1199, 1269
MaeIII GTNAC 2 cut(s) 3, 292
MalI GATC 4 cut(s) 167, 238, 1094, 1290
MboI GATC 4 cut(s) 165, 236, 1092, 1288
MhlI GDGCHC 4 cut(s) 68, 215, 1121, 1362
MlsI TGGCCA 3 cut(s) 998, 1196, 1223
MluCI AATT 3 cut(s) 99, 200, 705
MluNI TGGCCA 3 cut(s) 998, 1196, 1223
Mly113I GGCGCC 1 cut(s) 1172
MlyI GAGTC 2 cut(s) 659, 1052
MmeI TCCRAC 3 cut(s) 139, 811, 1131
Mox20I TGGCCA 3 cut(s) 998, 1196, 1223
Mph1103I ATGCAT 1 cut(s) 482
MroI TCCGGA 1 cut(s) 70
MscI TGGCCA 3 cut(s) 998, 1196, 1223
MslI CAYNNNNRTG 3 cut(s) 61, 743, 1355
Msp20I TGGCCA 3 cut(s) 998, 1196, 1223
MspA1I CMGCKG 2 cut(s) 461, 1072
MspI CCGG 5 cut(s) 71, 117, 1143, 1275, 1402
MspR9I CCNGG 3 cut(s) 118, 455, 1144
MvaI CCWGG 1 cut(s) 455
MvnI CGCG 3 cut(s) 1032, 1044, 1097
MwoI GCNNNNNNNGC 6 cut(s) 464, 515, 1004, 1043, 1144, 1220
NarI GGCGCC 1 cut(s) 1172
NciI CCSGG 2 cut(s) 118, 1144
NcoI CCATGG 2 cut(s) 801, 1224
NdeII GATC 4 cut(s) 165, 236, 1092, 1288
NheI GCTAGC 3 cut(s) 521, 1138, 1300
NlaIV GGNNCC 3 cut(s) 394, 820, 1173
NmeAIII GCCGAG 3 cut(s) 795, 1100, 1200
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 482
OliI CACNNNNGTG 1 cut(s) 61
PcsI WCGNNNNNNNCGW 5 cut(s) 1008, 1062, 1196, 1257, 1266
PfeI GAWTC 1 cut(s) 345
PflMI CCANNNNNTGG 1 cut(s) 188
PleI GAGTC 2 cut(s) 659, 1052
PluTI GGCGCC 1 cut(s) 1175
PpsI GAGTC 2 cut(s) 659, 1052
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 394, 820, 1173
PspPI GGNCC 4 cut(s) 451, 1126, 1212, 1395
PspPPI RGGWCCY 1 cut(s) 451
PstI CTGCAG 1 cut(s) 1104
RsaI GTAC 1 cut(s) 1106
RsaNI GTAC 1 cut(s) 1105
RseI CAYNNNNRTG 3 cut(s) 61, 743, 1355
Sau3AI GATC 4 cut(s) 165, 236, 1092, 1288
Sau96I GGNCC 4 cut(s) 451, 1126, 1212, 1395
ScaI AGTACT 1 cut(s) 1106
SchI GAGTC 2 cut(s) 659, 1052
ScrFI CCNGG 3 cut(s) 118, 455, 1144
SduI GDGCHC 4 cut(s) 68, 215, 1121, 1362
SfaNI GCATC 1 cut(s) 969
SfcI CTRYAG 1 cut(s) 1100
SfiI GGCCNNNNNGGCC 1 cut(s) 1220
SfoI GGCGCC 1 cut(s) 1173
SinI GGWCC 2 cut(s) 451, 1126
SmiMI CAYNNNNRTG 3 cut(s) 61, 743, 1355
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SpeI ACTAGT 1 cut(s) 298
Sse9I AATT 3 cut(s) 99, 200, 705
SspDI GGCGCC 1 cut(s) 1171
SspMI CTAG 5 cut(s) 299, 522, 974, 1139, 1301
StyD4I CCNGG 3 cut(s) 116, 453, 1142
StyI CCWWGG 2 cut(s) 801, 1224
TaaI ACNGT 4 cut(s) 28, 86, 682, 1322
TaiI ACGT 2 cut(s) 1202, 1272
TaqI TCGA 4 cut(s) 350, 582, 1014, 1056
TasI AATT 3 cut(s) 99, 200, 705
TatI WGTACW 1 cut(s) 1104
TauI GCSGC 8 cut(s) 279, 282, 461, 467, 521, 1007, 1049, 1072
TfiI GAWTC 1 cut(s) 345
TscAI CASTG 3 cut(s) 33, 384, 1369
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 6 cut(s) 121, 461, 756, 1072, 1099, 1179
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 118, 856
TspGWI ACGGA 3 cut(s) 772, 1234, 1246
TspRI CASTG 3 cut(s) 33, 384, 1369
Van91I CCANNNNNTGG 1 cut(s) 188
VneI GTGCAC 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 451, 1126
XcmI CCANNNNNNNNNTGG 4 cut(s) 101, 511, 934, 991
XspI CTAG 5 cut(s) 299, 522, 974, 1139, 1301
ZraI GACGTC 1 cut(s) 1270
ZrmI AGTACT 1 cut(s) 1106
Zsp2I ATGCAT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.