Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023337.1

Orthogroup ID

OG0005625

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1864

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023337.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 791 bp

ggtttagtcctactcacagtgcaagcccgcttgccttcactaaagccaccaccgtgcactccggacaatcccaacagtccatgccaagaaattggtggtggaaaagccgggcttctgttcataggtctatacatggtggcgcttggtgttggagggatcaaagggtcattaccaagtcatggagcagagcaatttgatgagagcacaccacaaggaaggaagcagagatcaaccttcttcaacttcttcgtcttctctcttgcttgcggcggcctgattgcggtgacactggtggtgtggattgaagacaacaaagggtgggaatggggtttcggaatctcgaccatcagcatattgttgtctataccagtgtttcttgctggttccactctttacaggaataagataccctgtggaagtcccctaacaaccattctaaaggtcctggccgctgccgcactcaacaaatgcataaccaagaacccaagcaatgccattgccagcatggccgctagcccttcttctccgaacccaatcatcataaagcaaccagcagaccagcctcaaaccgccatcgaactaaaacactccaccaccgaaacccccacgcagagcctcaagttcctaaacagagccgtcctcaacaagccgctccacgactcgctccaatgcacagtccagcaactagaagaggtcaaaatcgtcctcagaatccttcccattttcgcctgcacaatcatgctcaactgctgcctcgcccagctctccaccttctccgtccaacaagcctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0010119 GO:0010876 GO:0015075 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0016020 GO:0022857 GO:0033036 GO:0034220 GO:0043207 GO:0044464 GO:0046864 GO:0046865 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0080168 GO:0090440 GO:0098656 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

264

Amino Acids

28.2

Weight (kDa)

8.88

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27040 AT1G27040 AT1G27040 AT1G69850
fragaria_vesca	FvH4_4g32040 FvH4_4g32040 FvH4_4g32040
malus_domestica	MD13G1079300.v1.1 MD16G1079100.v1.1
prunus_persica	Prupe.1G267500_v2.0.a1 Prupe.1G267500_v2.0.a1 Prupe.1G267500_v2.0.a1
pyrus_communis	pycom13g06900 pycom16g06840
rosa_chinensis	RchiOBHm_Chr4g0440681
rosa_laevigata	RLG00000006159
rosa_multiflora	Rmu_co8303529.1_g000001 Rmu_sc0008018.1_g000011 Rmu_sc0023337.1_g000001 Rmu_sc0032009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381490
rosa_rugosa	Rorug04G0327500 Rorug04G0327500
rosa_samantha	Rh4AG379200 Rh4BG392000 Rh4CG406800 Rh4DG385700
rosa_wichuraiana	Rw4G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	652
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	9 cut(s)	28, 267, 270, 281, 450, 456, 510, 570, 650
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	2 cut(s)	447, 507
AfiI	CCNNNNNNNGG	2 cut(s)	179, 280
AgsI	TTSAA	2 cut(s)	241, 305
AjnI	CCWGG	1 cut(s)	444
AleI	CACNNNNGTG	1 cut(s)	52
AluBI	AGCT	1 cut(s)	763
AluI	AGCT	1 cut(s)	763
Alw21I	GWGCWC	2 cut(s)	59, 206
Alw44I	GTGCAC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	164
Aor13HI	TCCGGA	1 cut(s)	61
AoxI	GGCC	3 cut(s)	271, 447, 507
ApaLI	GTGCAC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	452, 750
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	442
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	295
AsuNHI	GCTAGC	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	244, 312
Bbv12I	GWGCWC	2 cut(s)	59, 206
BbvI	GCAGC	2 cut(s)	439, 737
BccI	CCATC	2 cut(s)	353, 581
BceAI	ACGGC	1 cut(s)	620
BciT130I	CCWGG	1 cut(s)	446
BcnI	CCSGG	1 cut(s)	109
BfaI	CTAG	2 cut(s)	513, 686
BfoI	RGCGCY	1 cut(s)	143
BglI	GCCNNNNNGGC	1 cut(s)	506
BisI	GCNGC	8 cut(s)	268, 271, 450, 453, 456, 510, 650, 751
BlsI	GCNGC	8 cut(s)	269, 272, 451, 454, 457, 511, 651, 752
Bme1390I	CCNGG	2 cut(s)	109, 446
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	2 cut(s)	109, 446
BmtI	GCTAGC	1 cut(s)	516
BpiI	GAAGAC	2 cut(s)	244, 312
BplI	GAGNNNNNCTC	2 cut(s)	624, 656
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 280
Bse1I	ACTGG	2 cut(s)	294, 368
Bse3DI	GCAATG	2 cut(s)	495, 496
BseAI	TCCGGA	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	179, 280
BseMI	GCAATG	2 cut(s)	495, 496
BseMII	CTCAG	1 cut(s)	721
BseNI	ACTGG	2 cut(s)	294, 368
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	439, 737
BseYI	CCCAGC	1 cut(s)	759
BsgI	GTGCAG	1 cut(s)	715
BshFI	GGCC	3 cut(s)	273, 449, 509
BsiHKAI	GWGCWC	2 cut(s)	59, 206
BsiSI	CCGG	2 cut(s)	62, 108
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	179, 280
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	273, 449, 509
Bsp1286I	GDGCHC	2 cut(s)	59, 206
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	156, 227
BspACI	CCGC	9 cut(s)	28, 267, 270, 281, 450, 456, 510, 570, 650
BspANI	GGCC	3 cut(s)	273, 449, 509
BspCNI	CTCAG	1 cut(s)	720
BspEI	TCCGGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	652
BsrDI	GCAATG	2 cut(s)	495, 496
BsrI	ACTGG	2 cut(s)	294, 368
BssMI	GATC	2 cut(s)	156, 227
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	4 cut(s)	19, 54, 77, 676
Bst6I	CTCTTC	1 cut(s)	684
BstC8I	GCNNGC	7 cut(s)	24, 28, 32, 265, 502, 514, 730
BstDEI	CTNAG	1 cut(s)	707
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	159, 230
BstMBI	GATC	2 cut(s)	156, 227
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 506
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	107, 444
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	439, 737
BstV2I	GAAGAC	2 cut(s)	244, 312
BstXI	CCANNNNNNTGG	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	273, 449, 509
BtsIMutI	CAGTG	3 cut(s)	24, 287, 375
Cac8I	GCNNGC	7 cut(s)	24, 28, 32, 265, 502, 514, 730
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	442
CviAII	CATG	5 cut(s)	81, 133, 179, 505, 739
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	2 cut(s)	158, 229
DpnII	GATC	2 cut(s)	156, 227
EaeI	YGGCCR	2 cut(s)	447, 507
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco47I	GGWCC	1 cut(s)	442
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	473
FaeI	CATG	5 cut(s)	84, 136, 182, 508, 742
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	5 cut(s)	80, 132, 178, 504, 738
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	8 cut(s)	268, 271, 450, 453, 456, 510, 650, 751
Fsp4HI	GCNGC	8 cut(s)	268, 271, 450, 453, 456, 510, 650, 751
FspBI	CTAG	2 cut(s)	513, 686
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	8 cut(s)	268, 271, 450, 453, 456, 510, 650, 751
GsaI	CCCAGC	1 cut(s)	763
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	273, 449, 509
HapII	CCGG	2 cut(s)	62, 108
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	5 cut(s)	84, 136, 182, 508, 742
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	3 cut(s)	336, 659, 711
HpaII	CCGG	2 cut(s)	62, 108
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	335, 528, 710
Hpy188III	TCNNGA	2 cut(s)	62, 340
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	6 cut(s)	45, 210, 244, 528, 725, 781
HpyCH4III	ACNGT	4 cut(s)	19, 54, 77, 676
HpyCH4V	TGCA	5 cut(s)	22, 57, 471, 672, 732
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 506
HpyF3I	CTNAG	1 cut(s)	707
Hsp92II	CATG	5 cut(s)	84, 136, 182, 508, 742
HspAI	GCGC	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	156, 227
LmnI	GCTCC	3 cut(s)	182, 657, 669
Lsp1109I	GCAGC	2 cut(s)	439, 737
MaeI	CTAG	2 cut(s)	513, 686
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	158, 229
MbiI	CCGCTC	1 cut(s)	652
MboI	GATC	2 cut(s)	156, 227
MboII	GAAGA	6 cut(s)	229, 238, 244, 317, 513, 701
MhlI	GDGCHC	2 cut(s)	59, 206
MluCI	AATT	2 cut(s)	90, 191
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	7 cut(s)	146, 573, 626, 650, 685, 716, 764
Mph1103I	ATGCAT	1 cut(s)	473
MroI	TCCGGA	1 cut(s)	61
MslI	CAYNNNNRTG	2 cut(s)	52, 737
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	2 cut(s)	62, 108
MspR9I	CCNGG	2 cut(s)	109, 446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	455, 506
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	156, 227
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	5 cut(s)	84, 136, 182, 508, 742
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	473
OliI	CACNNNNGTG	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	336, 711
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	8 cut(s)	269, 272, 451, 454, 457, 511, 651, 752
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	759
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	442
PspPPI	RGGWCCY	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	52, 737
SatI	GCNGC	8 cut(s)	268, 271, 450, 453, 456, 510, 650, 751
Sau3AI	GATC	2 cut(s)	156, 227
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	109, 446
SduI	GDGCHC	2 cut(s)	59, 206
SetI	ASST	6 cut(s)	127, 236, 444, 696, 765, 773
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	2 cut(s)	52, 737
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	2 cut(s)	90, 191
SsiI	CCGC	9 cut(s)	28, 267, 270, 281, 450, 456, 510, 570, 650
SspMI	CTAG	2 cut(s)	513, 686
StyD4I	CCNGG	2 cut(s)	107, 444
TaaI	ACNGT	4 cut(s)	19, 54, 77, 676
TaqI	TCGA	2 cut(s)	341, 576
TasI	AATT	2 cut(s)	90, 191
TauI	GCSGC	6 cut(s)	270, 273, 452, 458, 512, 652
TfiI	GAWTC	2 cut(s)	336, 711
TscAI	CASTG	3 cut(s)	24, 294, 375
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	452, 750
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	3 cut(s)	24, 294, 375
Van91I	CCANNNNNTGG	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	2 cut(s)	92, 502
XspI	CTAG	2 cut(s)	513, 686
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.