Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005625

Physical Location & Seq

Genomic Coordinates Reverse (-)

61444383 .. 61449396

Gene Structure 5014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGAACAAGAACAGCAGATAAGCAGCAGCAGCAGCAGCTCCAGATGGGAAGGCTATGTAGACTGGAGGAACAAACCCGCCTTCAGAGGCCGCCACGGCGGCATGGTGGCGGCCTCCTTCGTGCTGGTGGTGGAGGTGTTGGAGAACTTGGCGTATCTGGCAAATGCGAGCAATTTGGTGATGTACTTATCTACATATATGCATTTATCTCCATCCAAAGCTGCCAACAATGTCACAGATTTCATGGGCACTGCTTTCCTTCTCGCCCTTCTTGGAGGTTTCTTATCCGATGCCTTTTTCACAACTTATCACATCTACTTGATAAGTGCAGTAATTGAATTCCTGGGTTTAGTCCTACTCACAGTGCAAGCCCGCTTGCCTTCACTAAAGCCACCACCGTGCACTCCGGACAATCCCAACAGTCCATGCCAGGAAATTGGTGGTGGAAAAGCCGGGCTGCTGTTCATAGGTCTATACATGGTGGCGCTCGGTGTTGGAGGGATCAAAGGGTCATTACCAAGTCATGGAGCAGAGCAATTTGATGAGAGCACACCACAAGGAAGGAAGCAGAGATCAACCTTCTTCAACTTCTTCGTCTTCTCTCTCGCTTGCGGCGGCCTGATTGCGGTGACACTCGTGGTGTGGATTGAAGACAACAAAGGGTGGGAATGGGGTTTCGGAATCTCGACCATCAGCATATTGTTGTCTATACCAGTGTTTCTTGCTGGCTCCACTCTTTACAGGAATAAGATACCCTGTGGAAGTCCCCTAACAACCATTCTAAAGGTCCTGGCCGCTGCCGCACTCAACAAATGCATAACCAAGAGCCCAAGCAATGCCATTGCCAGCATGGCCGCTAGCCCTTCTTCTCCGACCATCATAAAGCAACCAGACCAACCTCAAACCGCCATCGAACTAAAACACTCCACCACCGAAACCCCCACGCAGAGCCTCAAGCTCCTAAACAGAGCCGTCCTCAACAAGCCCCTCCACGACTCGCTCCAATGCACAGTCCAGCAACTTGAAGAGGTCAAAATCGTCCTCAAAATCCTTCCCATTTTCGCCTGCACAATCATGCTCAACTGCTGCCTCGCCCAGCTCTCCACCTTCTCCGTCCAACAAGCCTCCACCATGGACACCAAGCTCGGCTCCTTCAAAGTCCCGCCCGCCTCCTCCCCATCTTCCCCGTCGTCTTCATCATCATCCTTGCTCCACTCTACGACCAGTTTATCGTCCCCTTCTTCCGAAAAGCCACCAAATCCGAAATGGGCATATCCCACCTCCAGCGCATCGGTATCGGACTATCCCTCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0010119 GO:0010876 GO:0015075 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0016020 GO:0022857 GO:0033036 GO:0034220 GO:0043207 GO:0044464 GO:0046864 GO:0046865 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0080168 GO:0090440 GO:0098656 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

438

Amino Acids

46.91

Weight (kDa)

8.49

Isoelectric Point (pI)

60.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	107 - 391	1.7e-65	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27040 AT1G27040 AT1G27040 AT1G69850
fragaria_vesca	FvH4_4g32040 FvH4_4g32040 FvH4_4g32040
malus_domestica	MD13G1079300.v1.1 MD16G1079100.v1.1
prunus_persica	Prupe.1G267500_v2.0.a1 Prupe.1G267500_v2.0.a1 Prupe.1G267500_v2.0.a1
pyrus_communis	pycom13g06900 pycom16g06840
rosa_chinensis	RchiOBHm_Chr4g0440681
rosa_laevigata	RLG00000006159
rosa_multiflora	Rmu_co8303529.1_g000001 Rmu_sc0008018.1_g000011 Rmu_sc0023337.1_g000001 Rmu_sc0032009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381490
rosa_rugosa	Rorug04G0327500 Rorug04G0327500
rosa_samantha	Rh4AG379200 Rh4BG392000 Rh4CG406800 Rh4DG385700
rosa_wichuraiana	Rw4G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	406
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	2 cut(s)	792, 852
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	524, 625
AgsI	TTSAA	5 cut(s)	338, 586, 650, 1025, 1156
AjnI	CCWGG	3 cut(s)	342, 429, 789
AleI	CACNNNNGTG	1 cut(s)	397
AluBI	AGCT	5 cut(s)	39, 221, 958, 1099, 1144
AluI	AGCT	5 cut(s)	39, 221, 958, 1099, 1144
Alw21I	GWGCWC	2 cut(s)	404, 551
Alw44I	GTGCAC	1 cut(s)	400
AlwI	GGATC	1 cut(s)	509
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	5 cut(s)	88, 111, 616, 792, 852
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	9 cut(s)	24, 27, 30, 33, 36, 221, 457, 797, 1086
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	487, 1289
AspS9I	GGNCC	1 cut(s)	787
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	190, 640
AsuNHI	GCTAGC	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	787
BaeGI	GKGCMC	2 cut(s)	251, 404
BanII	GRGCYC	1 cut(s)	830
BauI	CACGAG	1 cut(s)	635
BbsI	GAAGAC	3 cut(s)	589, 657, 1185
Bbv12I	GWGCWC	2 cut(s)	404, 551
BbvI	GCAGC	9 cut(s)	36, 39, 42, 45, 48, 208, 444, 784, 1073
BccI	CCATC	6 cut(s)	39, 220, 698, 884, 917, 1186
BceAI	ACGGC	2 cut(s)	112, 956
BcgI	CGANNNNNNTGC	2 cut(s)	1278, 1312
BciT130I	CCWGG	3 cut(s)	344, 431, 791
BcnI	CCSGG	1 cut(s)	454
BfaI	CTAG	1 cut(s)	858
BfoI	RGCGCY	1 cut(s)	488
BglI	GCCNNNNNGGC	3 cut(s)	96, 99, 851
Bme1390I	CCNGG	4 cut(s)	344, 431, 454, 791
Bme18I	GGWCC	1 cut(s)	787
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	2 cut(s)	730, 1150
BmrFI	CCNGG	4 cut(s)	344, 431, 454, 791
BmsI	GCATC	2 cut(s)	280, 1298
BmtI	GCTAGC	1 cut(s)	861
BpiI	GAAGAC	3 cut(s)	589, 657, 1185
BplI	GAGNNNNNCTC	2 cut(s)	960, 992
BpmI	CTGGAG	3 cut(s)	25, 85, 1267
BpuEI	CTTGAG	1 cut(s)	938
BpuMI	CCSGG	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	94, 343, 1131
BsaWI	WCCGGW	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 625
Bse1I	ACTGG	3 cut(s)	68, 713, 1224
Bse3DI	GCAATG	2 cut(s)	840, 841
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	3 cut(s)	344, 431, 791
BseDI	CCNNGG	3 cut(s)	94, 343, 1131
BseGI	GGATG	2 cut(s)	212, 1202
BseLI	CCNNNNNNNGG	2 cut(s)	524, 625
BseMI	GCAATG	2 cut(s)	840, 841
BseNI	ACTGG	3 cut(s)	68, 713, 1224
BseRI	GAGGAG	1 cut(s)	1162
BseSI	GKGCMC	2 cut(s)	251, 404
BseXI	GCAGC	9 cut(s)	36, 39, 42, 45, 48, 208, 444, 784, 1073
BseYI	CCCAGC	1 cut(s)	1095
BsgI	GTGCAG	2 cut(s)	348, 1051
BshFI	GGCC	5 cut(s)	90, 113, 618, 794, 854
BsiHKAI	GWGCWC	2 cut(s)	404, 551
BsiSI	CCGG	2 cut(s)	407, 453
BslFI	GGGAC	3 cut(s)	750, 1145, 1219
BslI	CCNNNNNNNGG	2 cut(s)	524, 625
BsmFI	GGGAC	3 cut(s)	750, 1145, 1219
BsnI	GGCC	5 cut(s)	90, 113, 618, 794, 854
Bsp1286I	GDGCHC	4 cut(s)	251, 404, 551, 830
Bsp13I	TCCGGA	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	501, 572
Bsp19I	CCATGG	1 cut(s)	1131
BspANI	GGCC	5 cut(s)	90, 113, 618, 794, 854
BspEI	TCCGGA	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	730, 1150
BspOI	GCTAGC	1 cut(s)	861
BspPI	GGATC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	840, 841
BsrI	ACTGG	3 cut(s)	68, 713, 1224
BssECI	CCNNGG	3 cut(s)	94, 343, 1131
BssMI	GATC	2 cut(s)	501, 572
BssSI	CACGAG	1 cut(s)	635
BssT1I	CCWWGG	1 cut(s)	1131
Bst2BI	CACGAG	1 cut(s)	635
Bst2UI	CCWGG	3 cut(s)	344, 431, 791
Bst4CI	ACNGT	4 cut(s)	364, 399, 422, 1012
Bst6I	CTCTTC	1 cut(s)	1020
BstDSI	CCRYGG	2 cut(s)	94, 1131
BstF5I	GGATG	2 cut(s)	212, 1202
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	2 cut(s)	487, 1289
BstKTI	GATC	2 cut(s)	504, 575
BstMBI	GATC	2 cut(s)	501, 572
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 33, 36, 96, 99, 158, 800, 851
BstNI	CCWGG	3 cut(s)	344, 431, 791
BstSCI	CCNGG	4 cut(s)	342, 429, 452, 789
BstSLI	GKGCMC	2 cut(s)	251, 404
BstV1I	GCAGC	9 cut(s)	36, 39, 42, 45, 48, 208, 444, 784, 1073
BstV2I	GAAGAC	3 cut(s)	589, 657, 1185
BstXI	CCANNNNNNTGG	1 cut(s)	437
BsuRI	GGCC	5 cut(s)	90, 113, 618, 794, 854
BtgI	CCRYGG	2 cut(s)	94, 1131
BtsCI	GGATG	2 cut(s)	212, 1202
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	3 cut(s)	249, 369, 720
CfoI	GCGC	2 cut(s)	487, 1289
Cfr13I	GGNCC	1 cut(s)	787
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	8 cut(s)	103, 244, 426, 478, 524, 850, 1075, 1132
CviQI	GTAC	1 cut(s)	184
DpnI	GATC	2 cut(s)	503, 574
DpnII	GATC	2 cut(s)	501, 572
EaeI	YGGCCR	2 cut(s)	792, 852
Eam1104I	CTCTTC	1 cut(s)	1020
EarI	CTCTTC	1 cut(s)	1020
Eco130I	CCWWGG	1 cut(s)	1131
Eco24I	GRGCYC	1 cut(s)	830
Eco47I	GGWCC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	3 cut(s)	342, 429, 789
EcoT14I	CCWWGG	1 cut(s)	1131
EcoT22I	ATGCAT	2 cut(s)	204, 818
EcoT38I	GRGCYC	1 cut(s)	830
ErhI	CCWWGG	1 cut(s)	1131
FaeI	CATG	8 cut(s)	106, 247, 429, 481, 527, 853, 1078, 1135
FaqI	GGGAC	3 cut(s)	750, 1145, 1219
FatI	CATG	8 cut(s)	102, 243, 425, 477, 523, 849, 1074, 1131
FauI	CCCGC	4 cut(s)	85, 380, 1170, 1174
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	2 cut(s)	199, 1189
FriOI	GRGCYC	1 cut(s)	830
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	2 cut(s)	486, 1288
GsaI	CCCAGC	1 cut(s)	1099
GsuI	CTGGAG	3 cut(s)	25, 85, 1267
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	5 cut(s)	90, 113, 618, 794, 854
HapII	CCGG	2 cut(s)	407, 453
HhaI	GCGC	2 cut(s)	487, 1289
Hin1II	CATG	8 cut(s)	106, 247, 429, 481, 527, 853, 1078, 1135
Hin6I	GCGC	2 cut(s)	485, 1287
HinP1I	GCGC	2 cut(s)	485, 1287
HinfI	GANTC	2 cut(s)	681, 995
HpaII	CCGG	2 cut(s)	407, 453
HphI	GGTGA	2 cut(s)	190, 640
Hpy166II	GTNNAC	2 cut(s)	61, 402
Hpy188I	TCNGA	7 cut(s)	86, 289, 680, 873, 1246, 1263, 1300
Hpy188III	TCNNGA	3 cut(s)	42, 407, 685
Hpy8I	GTNNAC	2 cut(s)	61, 402
Hpy99I	CGWCG	1 cut(s)	1192
HpyCH4III	ACNGT	4 cut(s)	364, 399, 422, 1012
HpyCH4V	TGCA	7 cut(s)	202, 329, 367, 402, 816, 1008, 1068
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 33, 36, 96, 99, 158, 800, 851
Hsp92II	CATG	8 cut(s)	106, 247, 429, 481, 527, 853, 1078, 1135
HspAI	GCGC	2 cut(s)	485, 1287
Kpn2I	TCCGGA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	501, 572
LmnI	GCTCC	7 cut(s)	44, 527, 734, 963, 1005, 1154, 1215
Lsp1109I	GCAGC	9 cut(s)	36, 39, 42, 45, 48, 208, 444, 784, 1073
LweI	GCATC	2 cut(s)	280, 1298
MaeI	CTAG	1 cut(s)	858
MaeIII	GTNAC	2 cut(s)	232, 628
MalI	GATC	2 cut(s)	503, 574
MboI	GATC	2 cut(s)	501, 572
MboII	GAAGA	9 cut(s)	574, 583, 589, 662, 858, 1037, 1173, 1185, 1233
MhlI	GDGCHC	4 cut(s)	251, 404, 551, 830
MluCI	AATT	5 cut(s)	172, 333, 338, 435, 536
MlyI	GAGTC	1 cut(s)	989
MmeI	TCCRAC	4 cut(s)	120, 475, 896, 1141
Mph1103I	ATGCAT	2 cut(s)	204, 818
MroI	TCCGGA	1 cut(s)	406
MslI	CAYNNNNRTG	2 cut(s)	397, 1073
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	2 cut(s)	407, 453
MspR9I	CCNGG	4 cut(s)	344, 431, 454, 791
MvaI	CCWGG	3 cut(s)	344, 431, 791
MwoI	GCNNNNNNNGC	8 cut(s)	30, 33, 36, 96, 99, 158, 800, 851
NciI	CCSGG	1 cut(s)	454
NcoI	CCATGG	1 cut(s)	1131
NdeII	GATC	2 cut(s)	501, 572
NheI	GCTAGC	1 cut(s)	857
NlaIII	CATG	8 cut(s)	106, 247, 429, 481, 527, 853, 1078, 1135
NlaIV	GGNNCC	2 cut(s)	730, 1150
NmeAIII	GCCGAG	1 cut(s)	1125
NmuCI	GTSAC	2 cut(s)	232, 628
NsiI	ATGCAT	2 cut(s)	204, 818
OliI	CACNNNNGTG	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	681
PflMI	CCANNNNNTGG	1 cut(s)	524
PleI	GAGTC	1 cut(s)	989
PpsI	GAGTC	1 cut(s)	989
PpuMI	RGGWCCY	1 cut(s)	787
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	3 cut(s)	342, 429, 789
PspFI	CCCAGC	1 cut(s)	1095
PspGI	CCWGG	3 cut(s)	342, 429, 789
PspN4I	GGNNCC	2 cut(s)	730, 1150
PspPI	GGNCC	1 cut(s)	787
PspPPI	RGGWCCY	1 cut(s)	787
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	2 cut(s)	397, 1073
Sau3AI	GATC	2 cut(s)	501, 572
Sau96I	GGNCC	1 cut(s)	787
SchI	GAGTC	1 cut(s)	989
ScrFI	CCNGG	4 cut(s)	344, 431, 454, 791
SduI	GDGCHC	4 cut(s)	251, 404, 551, 830
SfaNI	GCATC	2 cut(s)	280, 1298
SinI	GGWCC	1 cut(s)	787
SmiMI	CAYNNNNRTG	2 cut(s)	397, 1073
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
Sse9I	AATT	5 cut(s)	172, 333, 338, 435, 536
SspMI	CTAG	1 cut(s)	858
StyD4I	CCNGG	4 cut(s)	342, 429, 452, 789
StyI	CCWWGG	1 cut(s)	1131
TaaI	ACNGT	4 cut(s)	364, 399, 422, 1012
TaqI	TCGA	2 cut(s)	686, 912
TasI	AATT	5 cut(s)	172, 333, 338, 435, 536
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	8 cut(s)	93, 102, 113, 615, 618, 797, 803, 857
TfiI	GAWTC	1 cut(s)	681
TscAI	CASTG	3 cut(s)	256, 369, 720
TseFI	GTSAC	2 cut(s)	232, 628
TseI	GCWGC	9 cut(s)	24, 27, 30, 33, 36, 221, 457, 797, 1086
Tsp45I	GTSAC	2 cut(s)	232, 628
TspDTI	ATGAA	3 cut(s)	232, 454, 1185
TspGWI	ACGGA	1 cut(s)	1102
TspRI	CASTG	3 cut(s)	256, 369, 720
Van91I	CCANNNNNTGG	1 cut(s)	524
VneI	GTGCAC	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	787
XapI	RAATTY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	3 cut(s)	437, 847, 1263
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	858
Zsp2I	ATGCAT	2 cut(s)	204, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.