Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8303529.1

Orthogroup ID

OG0005625

Physical Location & Seq

Genomic Coordinates Forward (+)

29 .. 721

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8303529.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgctcaactgctgcctcgcccagctctccaccttctccgtccaacaagcctccaccatggacaccaagctcggctccttcaaagtcccgcccgcctccctccccatcttccccgtcgtcttcatcatcatccttgctccactctacgaccagtttatcgtccccttcttccgaaaaaccaccaaatccgaaatgggcatatcccacctccagcgcatcggtatcggactagccctctccatagtcgcaatggccatcgccgccctcgtcgaaatcaagcggaagcgcgtggcctcacgcgccgccatgctcgactccaccgagccgctgcccatcacattcttctggatcgcgctgcagtacttgtttctgggctcggcggacctgttcacgctcgccgggctgctggagtttttcttcaccgaggcgccgagcagcatgaggtcgctggccacgtcgctcacttgggcctctctggccatgggatactacctcagctccgtcatcgtgtccgtcgtgaacgacgtctccggcaagttttccgatcataaatggctggcgggaagcaagttgaacagttatcatctggagaggttctactggctcatgtgtgtgctcagtgggttgaacttcttgcactacctgttctgggcctgccggtataaatacagaacgacgggggcaaataagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0010119 GO:0010876 GO:0015075 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0016020 GO:0022857 GO:0033036 GO:0034220 GO:0043207 GO:0044464 GO:0046864 GO:0046865 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0080168 GO:0090440 GO:0098656 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

230

Amino Acids

25.76

Weight (kDa)

9.41

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27040 AT1G27040 AT1G27040 AT1G69850
fragaria_vesca	FvH4_4g32040 FvH4_4g32040 FvH4_4g32040
malus_domestica	MD13G1079300.v1.1 MD16G1079100.v1.1
prunus_persica	Prupe.1G267500_v2.0.a1 Prupe.1G267500_v2.0.a1 Prupe.1G267500_v2.0.a1
pyrus_communis	pycom13g06900 pycom16g06840
rosa_chinensis	RchiOBHm_Chr4g0440681
rosa_laevigata	RLG00000006159
rosa_multiflora	Rmu_co8303529.1_g000001 Rmu_sc0008018.1_g000011 Rmu_sc0023337.1_g000001 Rmu_sc0032009.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381490
rosa_rugosa	Rorug04G0327500 Rorug04G0327500
rosa_samantha	Rh4AG379200 Rh4BG392000 Rh4CG406800 Rh4DG385700
rosa_wichuraiana	Rw4G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	427
AccII	CGCG	3 cut(s)	288, 300, 353
AciI	CCGC	8 cut(s)	89, 93, 261, 280, 303, 326, 380, 560
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	3 cut(s)	252, 450, 477
AcyI	GRCGYC	2 cut(s)	428, 525
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	649
AgsI	TTSAA	3 cut(s)	82, 574, 628
AjiI	CACGTC	1 cut(s)	456
AloI	GAACNNNNNNTCC	2 cut(s)	512, 544
AluBI	AGCT	3 cut(s)	25, 70, 498
AluI	AGCT	3 cut(s)	25, 70, 498
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	1 cut(s)	356
AoxI	GGCC	6 cut(s)	252, 291, 450, 468, 477, 651
ApeKI	GCWGC	5 cut(s)	12, 328, 355, 403, 435
AspLEI	GCGC	5 cut(s)	216, 288, 302, 355, 430
AspS9I	GGNCC	3 cut(s)	382, 468, 651
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	382
BalI	TGGCCA	3 cut(s)	254, 452, 479
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	618
BbvCI	CCTCAGC	1 cut(s)	494
BbvI	GCAGC	4 cut(s)	315, 342, 390, 447
BccI	CCATC	3 cut(s)	113, 263, 341
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciVI	GTATCC	1 cut(s)	479
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	479
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	8 cut(s)	13, 261, 303, 326, 329, 356, 404, 436
BlsI	GCNGC	8 cut(s)	14, 262, 304, 327, 330, 357, 405, 437
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	456
BmgT120I	GGNCC	3 cut(s)	382, 468, 651
BmiI	GGNNCC	2 cut(s)	76, 429
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	112
BpmI	CTGGAG	3 cut(s)	194, 428, 608
Bpu10I	CCTNAGC	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	400
BsaHI	GRCGYC	2 cut(s)	428, 525
BsaJI	CCNNGG	3 cut(s)	57, 423, 480
BsaXI	ACNNNNNCTCC	4 cut(s)	482, 512, 512, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse118I	RCCGGY	1 cut(s)	657
Bse1I	ACTGG	2 cut(s)	151, 605
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	57, 423, 480
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	508, 631
BseNI	ACTGG	2 cut(s)	151, 605
BseXI	GCAGC	4 cut(s)	315, 342, 390, 447
BseYI	CCCAGC	1 cut(s)	21
Bsh1236I	CGCG	3 cut(s)	288, 300, 353
BshFI	GGCC	6 cut(s)	254, 293, 452, 470, 479, 653
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	3 cut(s)	399, 531, 658
BslFI	GGGAC	2 cut(s)	71, 146
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmAI	GTCTC	1 cut(s)	532
BsmBI	CGTCTC	1 cut(s)	532
BsmFI	GGGAC	2 cut(s)	71, 146
BsnI	GGCC	6 cut(s)	254, 293, 452, 470, 479, 653
Bsp1286I	GDGCHC	2 cut(s)	377, 618
Bsp143I	GATC	2 cut(s)	348, 544
Bsp19I	CCATGG	2 cut(s)	57, 480
BspACI	CCGC	8 cut(s)	89, 93, 261, 280, 303, 326, 380, 560
BspANI	GGCC	6 cut(s)	254, 293, 452, 470, 479, 653
BspCNI	CTCAG	2 cut(s)	507, 630
BspFNI	CGCG	3 cut(s)	288, 300, 353
BspLI	GGNNCC	2 cut(s)	76, 429
BspMAI	CTGCAG	1 cut(s)	360
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	151, 605
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	3 cut(s)	57, 423, 480
BssMI	GATC	2 cut(s)	348, 544
BssNI	GRCGYC	2 cut(s)	428, 525
BssT1I	CCWWGG	2 cut(s)	57, 480
Bst4CI	ACNGT	1 cut(s)	578
BstACI	GRCGYC	2 cut(s)	428, 525
BstC8I	GCNNGC	5 cut(s)	93, 396, 450, 558, 655
BstDEI	CTNAG	2 cut(s)	494, 617
BstDSI	CCRYGG	2 cut(s)	57, 480
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	3 cut(s)	288, 300, 353
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	5 cut(s)	216, 288, 302, 355, 430
BstKTI	GATC	2 cut(s)	351, 547
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	2 cut(s)	348, 544
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 299, 400, 476
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	356
BstUI	CGCG	3 cut(s)	288, 300, 353
BstV1I	GCAGC	4 cut(s)	315, 342, 390, 447
BstV2I	GAAGAC	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	6 cut(s)	254, 293, 452, 470, 479, 653
BtgI	CCRYGG	2 cut(s)	57, 480
BtgZI	GCGATG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	5 cut(s)	93, 396, 450, 558, 655
CfoI	GCGC	5 cut(s)	216, 288, 302, 355, 430
Cfr10I	RCCGGY	1 cut(s)	657
Cfr13I	GGNCC	3 cut(s)	382, 468, 651
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	5 cut(s)	58, 307, 439, 481, 607
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	494, 617
DinI	GGCGCC	1 cut(s)	429
DpnI	GATC	2 cut(s)	350, 546
DpnII	GATC	2 cut(s)	348, 544
EaeI	YGGCCR	3 cut(s)	252, 450, 477
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	2 cut(s)	57, 480
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	57, 480
EcoT38I	GRGCYC	1 cut(s)	377
EgeI	GGCGCC	1 cut(s)	429
EheI	GGCGCC	1 cut(s)	429
ErhI	CCWWGG	2 cut(s)	57, 480
Esp3I	CGTCTC	1 cut(s)	532
FaeI	CATG	5 cut(s)	61, 310, 442, 484, 610
FaiI	YATR	9 cut(s)	59, 200, 242, 308, 440, 482, 549, 608, 663
FaqI	GGGAC	2 cut(s)	71, 146
FatI	CATG	5 cut(s)	57, 306, 438, 480, 606
FauI	CCCGC	3 cut(s)	96, 100, 553
Fnu4HI	GCNGC	8 cut(s)	13, 261, 303, 326, 329, 356, 404, 436
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	8 cut(s)	13, 261, 303, 326, 329, 356, 404, 436
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	5 cut(s)	215, 287, 301, 354, 429
GluI	GCNGC	8 cut(s)	13, 261, 303, 326, 329, 356, 404, 436
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	3 cut(s)	194, 428, 608
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	6 cut(s)	254, 293, 452, 470, 479, 653
HapII	CCGG	3 cut(s)	399, 531, 658
HhaI	GCGC	5 cut(s)	216, 288, 302, 355, 430
Hin1I	GRCGYC	2 cut(s)	428, 525
Hin1II	CATG	5 cut(s)	61, 310, 442, 484, 610
Hin6I	GCGC	5 cut(s)	214, 286, 300, 353, 428
HinP1I	GCGC	5 cut(s)	214, 286, 300, 353, 428
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	3 cut(s)	399, 531, 658
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	2 cut(s)	390, 520
Hpy188I	TCNGA	4 cut(s)	173, 190, 227, 544
Hpy188III	TCNNGA	3 cut(s)	346, 517, 587
Hpy8I	GTNNAC	2 cut(s)	390, 520
Hpy99I	CGWCG	6 cut(s)	119, 272, 460, 518, 527, 679
HpyAV	CCTTC	3 cut(s)	43, 88, 175
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	2 cut(s)	455, 525
HpyCH4V	TGCA	2 cut(s)	358, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 299, 400, 476
HpyF3I	CTNAG	2 cut(s)	494, 617
HpySE526I	ACGT	2 cut(s)	455, 525
Hsp92I	GRCGYC	2 cut(s)	428, 525
Hsp92II	CATG	5 cut(s)	61, 310, 442, 484, 610
HspAI	GCGC	5 cut(s)	214, 286, 300, 353, 428
KasI	GGCGCC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	348, 544
LmnI	GCTCC	3 cut(s)	80, 142, 503
Lsp1109I	GCAGC	4 cut(s)	315, 342, 390, 447
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	455, 525
MalI	GATC	2 cut(s)	350, 546
MboI	GATC	2 cut(s)	348, 544
MboII	GAAGA	5 cut(s)	100, 112, 160, 334, 409
MhlI	GDGCHC	2 cut(s)	377, 618
MlsI	TGGCCA	3 cut(s)	254, 452, 479
MluNI	TGGCCA	3 cut(s)	254, 452, 479
Mly113I	GGCGCC	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	67
Mox20I	TGGCCA	3 cut(s)	254, 452, 479
MscI	TGGCCA	3 cut(s)	254, 452, 479
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	3 cut(s)	254, 452, 479
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	3 cut(s)	399, 531, 658
MspR9I	CCNGG	1 cut(s)	400
MvnI	CGCG	3 cut(s)	288, 300, 353
MwoI	GCNNNNNNNGC	4 cut(s)	260, 299, 400, 476
NarI	GGCGCC	1 cut(s)	428
NciI	CCSGG	1 cut(s)	400
NcoI	CCATGG	2 cut(s)	57, 480
NdeII	GATC	2 cut(s)	348, 544
NlaIII	CATG	5 cut(s)	61, 310, 442, 484, 610
NlaIV	GGNNCC	2 cut(s)	76, 429
NmeAIII	GCCGAG	3 cut(s)	51, 356, 456
PcsI	WCGNNNNNNNCGW	5 cut(s)	264, 318, 452, 513, 522
PkrI	GCNGC	8 cut(s)	14, 262, 304, 327, 330, 357, 405, 437
PleI	GAGTC	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	76, 429
PspPI	GGNCC	3 cut(s)	382, 468, 651
PstI	CTGCAG	1 cut(s)	360
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	611
SatI	GCNGC	8 cut(s)	13, 261, 303, 326, 329, 356, 404, 436
Sau3AI	GATC	2 cut(s)	348, 544
Sau96I	GGNCC	3 cut(s)	382, 468, 651
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	377, 618
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	356
SfiI	GGCCNNNNNGGCC	1 cut(s)	476
SfoI	GGCGCC	1 cut(s)	429
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	611
SsiI	CCGC	8 cut(s)	89, 93, 261, 280, 303, 326, 380, 560
SspDI	GGCGCC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	2 cut(s)	57, 480
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	2 cut(s)	458, 528
TaqI	TCGA	2 cut(s)	270, 312
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	3 cut(s)	263, 305, 328
TscAI	CASTG	1 cut(s)	625
TseI	GCWGC	5 cut(s)	12, 328, 355, 403, 435
TspDTI	ATGAA	1 cut(s)	112
TspGWI	ACGGA	3 cut(s)	28, 490, 502
TspRI	CASTG	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	2 cut(s)	190, 247
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	1 cut(s)	526
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.