Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010806

Physical Location & Seq

Genomic Coordinates Reverse (-)

9513081 .. 9515050

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGTTCTCTACCGCCGACTTTGAAAGGCTTATCATGTTCGAACATGCTCGCAAAAATTCTGAGGCTCAGTACAAGAACGATCCTCTTGATTCCGAGAATCTGCTGAAATGGGGTGGAGCTTTACTTGAACTTTCACAGTTCCAGCCTATTCCTGAAGCTAAGCTCATGTTAAATGATGCTATTTCCAAGTTGGAAGAGGCCTTGACAATAAATCCAGGGAAGCATCAGGCTCTTTGGTGTATTGCCAACGCGTACACCGCCCACGCGTTTTATGTTCACGATCCTGAAGAAGCAAAAGAGCACTTTGATAAAGCCACTGAATATTTCCAGAGAGCAGAAAATGAGGATCCAGGTAATGACACATATCGCAAGTCCTTGGATTCCTCACTAAAGGCCCCGGAACTGCATATGCAGTTTATGAATCAAGGAATGGGACAGCAAATACTAGGTGGAGGAGGAGGAGGAGGTGGAGGAGGAATGGCTTCATCTAATGTTAGCCAGAGTAGTAAGAAGAAGAAGAGGAACACTGAATTCACTTATGATGTATGCGGTTGGATAATTCTCGCTTGTGGGATTGTTGCTTGGGTTGGCATGGCAAAATCCCTTGGCCCTCCACCTCCTGCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

210

Amino Acids

23.17

Weight (kDa)

5.53

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	1 - 145	4.2e-69	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27390 AT1G27390
fragaria_vesca	FvH4_4g23830
malus_domestica	MD13G1118400.v1.1 MD16G1118500.v1.1
prunus_persica	Prupe.1G226600_v2.0.a1 Prupe.1G226600_v2.0.a1
pyrus_communis	pycom13g10310 pycom16g10150
rosa_chinensis	RchiOBHm_Chr4g0430391
rosa_laevigata	RLG00000006980
rosa_multiflora	Rmu_co8521431.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372180
rosa_rugosa	Rorug04G0242700 Rorug04G0242700
rosa_samantha	Rh4AG299200 Rh4BG305900 Rh4CG321800 Rh4DG303100
rosa_wichuraiana	Rw4G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	254, 269
AciI	CCGC	3 cut(s)	15, 261, 552
AclWI	GGATC	4 cut(s)	77, 278, 344, 357
AcsI	RAATTY	2 cut(s)	58, 533
AcuI	CTGAAG	2 cut(s)	177, 309
AfaI	GTAC	2 cut(s)	74, 257
AflIII	ACRYGT	2 cut(s)	252, 267
AgsI	TTSAA	2 cut(s)	26, 131
AjnI	CCWGG	2 cut(s)	217, 352
AluBI	AGCT	3 cut(s)	122, 161, 166
AluI	AGCT	3 cut(s)	122, 161, 166
Alw21I	GWGCWC	1 cut(s)	306
AlwI	GGATC	4 cut(s)	77, 278, 344, 357
AoxI	GGCC	3 cut(s)	201, 396, 610
ApoI	RAATTY	2 cut(s)	58, 533
Asp700I	GAANNNNTTC	1 cut(s)	484
AspS9I	GGNCC	2 cut(s)	397, 611
AsuC2I	CCSGG	1 cut(s)	401
AsuII	TTCGAA	1 cut(s)	42
BamHI	GGATCC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	306
BciT130I	CCWGG	2 cut(s)	219, 354
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	1 cut(s)	449
BlpI	GCTNAGC	1 cut(s)	162
Bme1390I	CCNGG	3 cut(s)	219, 354, 401
BmgT120I	GGNCC	2 cut(s)	397, 611
BmiI	GGNNCC	2 cut(s)	351, 399
BmrFI	CCNGG	3 cut(s)	219, 354, 401
BmsI	GCATC	2 cut(s)	169, 235
Bpu1102I	GCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	4 cut(s)	218, 378, 399, 607
BseBI	CCWGG	2 cut(s)	219, 354
BseDI	CCNNGG	4 cut(s)	218, 378, 399, 607
BseMII	CTCAG	2 cut(s)	54, 83
BseRI	GAGGAG	5 cut(s)	471, 474, 477, 480, 489
Bsh1236I	CGCG	2 cut(s)	254, 269
BshFI	GGCC	3 cut(s)	203, 398, 612
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	3 cut(s)	203, 398, 612
Bsp119I	TTCGAA	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	82, 283, 349
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	3 cut(s)	15, 261, 552
BspANI	GGCC	3 cut(s)	203, 398, 612
BspCNI	CTCAG	2 cut(s)	55, 82
BspFNI	CGCG	2 cut(s)	254, 269
BspLI	GGNNCC	2 cut(s)	351, 399
BspPI	GGATC	4 cut(s)	77, 278, 344, 357
BspT104I	TTCGAA	1 cut(s)	42
BssECI	CCNNGG	4 cut(s)	218, 378, 399, 607
BssMI	GATC	3 cut(s)	82, 283, 349
BssT1I	CCWWGG	2 cut(s)	378, 607
Bst2UI	CCWGG	2 cut(s)	219, 354
Bst4CI	ACNGT	1 cut(s)	141
Bst6I	CTCTTC	2 cut(s)	192, 515
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	63, 69, 162
BstFNI	CGCG	2 cut(s)	254, 269
BstKTI	GATC	3 cut(s)	85, 286, 352
BstMBI	GATC	3 cut(s)	82, 283, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	219, 354
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	217, 352, 399
BstUI	CGCG	2 cut(s)	254, 269
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	203, 398, 612
BtsIMutI	CAGTG	2 cut(s)	318, 528
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	397, 611
Csp6I	GTAC	2 cut(s)	73, 256
CviAII	CATG	4 cut(s)	37, 47, 169, 595
CviQI	GTAC	2 cut(s)	73, 256
DdeI	CTNAG	3 cut(s)	63, 69, 162
DpnI	GATC	3 cut(s)	84, 285, 351
DpnII	GATC	3 cut(s)	82, 283, 349
Eam1104I	CTCTTC	2 cut(s)	192, 515
EarI	CTCTTC	2 cut(s)	192, 515
Eco130I	CCWWGG	2 cut(s)	378, 607
Eco147I	AGGCCT	1 cut(s)	203
Eco57I	CTGAAG	2 cut(s)	177, 309
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	217, 352
EcoT14I	CCWWGG	2 cut(s)	378, 607
ErhI	CCWWGG	2 cut(s)	378, 607
FaeI	CATG	4 cut(s)	40, 50, 172, 598
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	4 cut(s)	36, 46, 168, 594
FauNDI	CATATG	1 cut(s)	411
FspBI	CTAG	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	203, 398, 612
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	4 cut(s)	40, 50, 172, 598
HinfI	GANTC	4 cut(s)	92, 100, 383, 424
HpaII	CCGG	1 cut(s)	401
Hpy166II	GTNNAC	2 cut(s)	258, 280
Hpy188I	TCNGA	2 cut(s)	64, 97
Hpy188III	TCNNGA	5 cut(s)	89, 155, 281, 287, 331
Hpy8I	GTNNAC	2 cut(s)	258, 280
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	409, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	63, 69, 162
Hsp92II	CATG	4 cut(s)	40, 50, 172, 598
Kzo9I	GATC	3 cut(s)	82, 283, 349
LmnI	GCTCC	1 cut(s)	119
LweI	GCATC	2 cut(s)	169, 235
MaeI	CTAG	1 cut(s)	449
MalI	GATC	3 cut(s)	84, 285, 351
MboI	GATC	3 cut(s)	82, 283, 349
MboII	GAAGA	5 cut(s)	209, 302, 526, 529, 532
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	3 cut(s)	58, 533, 561
MluI	ACGCGT	2 cut(s)	252, 267
MmeI	TCCRAC	2 cut(s)	174, 536
MroXI	GAANNNNTTC	1 cut(s)	484
MseI	TTAA	1 cut(s)	173
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	3 cut(s)	219, 354, 401
MvaI	CCWGG	2 cut(s)	219, 354
MvnI	CGCG	2 cut(s)	254, 269
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	401
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	3 cut(s)	82, 283, 349
NlaIII	CATG	4 cut(s)	40, 50, 172, 598
NlaIV	GGNNCC	2 cut(s)	351, 399
NspI	RCATGY	1 cut(s)	50
NspV	TTCGAA	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	484
PfeI	GAWTC	4 cut(s)	92, 100, 383, 424
Psp6I	CCWGG	2 cut(s)	217, 352
PspGI	CCWGG	2 cut(s)	217, 352
PspN4I	GGNNCC	2 cut(s)	351, 399
PspPI	GGNCC	2 cut(s)	397, 611
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	2 cut(s)	74, 257
RsaNI	GTAC	2 cut(s)	73, 256
SaqAI	TTAA	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	82, 283, 349
Sau96I	GGNCC	2 cut(s)	397, 611
ScrFI	CCNGG	3 cut(s)	219, 354, 401
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	7 cut(s)	124, 163, 168, 358, 454, 472, 622
SfaNI	GCATC	2 cut(s)	169, 235
SfuI	TTCGAA	1 cut(s)	42
Sse9I	AATT	3 cut(s)	58, 533, 561
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	3 cut(s)	15, 261, 552
SspI	AATATT	1 cut(s)	326
SspMI	CTAG	1 cut(s)	449
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	3 cut(s)	217, 352, 399
StyI	CCWWGG	2 cut(s)	378, 607
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	58, 533, 561
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	4 cut(s)	92, 100, 383, 424
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	325, 535
TspDTI	ATGAA	2 cut(s)	437, 477
TspRI	CASTG	2 cut(s)	325, 535
XapI	RAATTY	2 cut(s)	58, 533
XceI	RCATGY	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	484
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.