Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010806

Physical Location & Seq

Genomic Coordinates Reverse (-)

53637533 .. 53640244

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCAGTTCTCTCAGGACGACTTCGACCGCCTCTTGCTCTCCGAGCACAGCCGCAAGACCTGTGAAGCTCACTACGCCAAGAACCCTCAAGACGCCGAGAACTTAGTCAAATGGGCCGGAGCTCTGCTCGAACTGTCGCAGTTTCAGAGTATTGCCGACTCCCGGATCATGCTTGATGATTGTATTTCGAAGCTGGAGGAGGCTCTGGTGATCAATCCTACAAAGCATGAAGCTCTATGGTGTCTTGGGAACGCGCATACATCTCATGGATTCATGAATCCTGACTTGGACGAGGCAAGGCCTTATTTCGAGAAGGCGTCGGAGTATTTCCAGAGGGCTGCCGAGCAGGAACCTGCCAATGAGCTTTATCAGAAGTCCATAGAAGTCACAGCTAAGGCACCAGAGTTGCATATGGAGATCCATAAGCAAGGAATGGCTCAACAGGCACTAGGTGGGGGACCTGCCACTTCCTCAAGTGGAAAGAGTTCCAAGGCTAAGAGGAGCAGTGATCTCAAGTATGACATATGTGGATGGATTATCCTTGCAGTTGGCATTTTTGCATGGGTTGGAGCGAAATCCAACGTGCCACCACCCCCACCCCCACCCCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

204

Amino Acids

22.62

Weight (kDa)

5.64

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	8 - 191	1.2e-87	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27390 AT1G27390
fragaria_vesca	FvH4_4g23830
malus_domestica	MD13G1118400.v1.1 MD16G1118500.v1.1
prunus_persica	Prupe.1G226600_v2.0.a1 Prupe.1G226600_v2.0.a1
pyrus_communis	pycom13g10310 pycom16g10150
rosa_chinensis	RchiOBHm_Chr4g0430391
rosa_laevigata	RLG00000006980
rosa_multiflora	Rmu_co8521431.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372180
rosa_rugosa	Rorug04G0242700 Rorug04G0242700
rosa_samantha	Rh4AG299200 Rh4BG305900 Rh4CG321800 Rh4DG303100
rosa_wichuraiana	Rw4G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	361, 469
AccB1I	GGYRCC	1 cut(s)	397
AccII	CGCG	1 cut(s)	254
AciI	CCGC	2 cut(s)	28, 52
AclWI	GGATC	2 cut(s)	173, 412
AcyI	GRCGYC	2 cut(s)	93, 317
AdeI	CACNNNGTG	1 cut(s)	452
AfiI	CCNNNNNNNGG	1 cut(s)	162
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	6 cut(s)	68, 122, 193, 233, 364, 392
AluI	AGCT	6 cut(s)	68, 122, 193, 233, 364, 392
Alw21I	GWGCWC	2 cut(s)	48, 124
AlwI	GGATC	2 cut(s)	173, 412
AoxI	GGCC	2 cut(s)	114, 299
ApeKI	GCWGC	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	114, 458
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	48, 124
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	525
BclI	TGATCA	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	449
BfuAI	ACCTGC	2 cut(s)	361, 469
BisI	GCNGC	2 cut(s)	52, 339
BlsI	GCNGC	2 cut(s)	53, 340
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	114, 458
BmiI	GGNNCC	3 cut(s)	351, 399, 459
BmrFI	CCNGG	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	188
BpuEI	CTTGAG	3 cut(s)	72, 457, 497
BpuMI	CCSGG	1 cut(s)	163
BsaHI	GRCGYC	2 cut(s)	93, 317
BsaJI	CCNNGG	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	536
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	212, 514
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	116, 301
BshNI	GGYRCC	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	48, 124
BsiSI	CCGG	2 cut(s)	117, 163
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	2 cut(s)	116, 301
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	48, 124
Bsp143I	GATC	4 cut(s)	165, 210, 417, 508
BspACI	CCGC	2 cut(s)	28, 52
BspANI	GGCC	2 cut(s)	116, 301
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	351, 399, 459
BspMI	ACCTGC	2 cut(s)	361, 469
BspPI	GGATC	2 cut(s)	173, 412
BspT104I	TTCGAA	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	4 cut(s)	165, 210, 417, 508
BssNI	GRCGYC	2 cut(s)	93, 317
BssT1I	CCWWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	135
BstACI	GRCGYC	2 cut(s)	93, 317
BstBI	TTCGAA	1 cut(s)	188
BstDEI	CTNAG	4 cut(s)	12, 103, 393, 495
BstF5I	GGATG	1 cut(s)	536
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	4 cut(s)	168, 213, 420, 511
BstMBI	GATC	4 cut(s)	165, 210, 417, 508
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 74, 443
BstSCI	CCNGG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	116, 301
BtsCI	GGATG	1 cut(s)	536
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	511
BveI	ACCTGC	2 cut(s)	361, 469
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	114, 458
CseI	GACGC	2 cut(s)	101, 306
CviAII	CATG	5 cut(s)	169, 227, 266, 274, 561
DdeI	CTNAG	4 cut(s)	12, 103, 393, 495
DpnI	GATC	4 cut(s)	167, 212, 419, 510
DpnII	GATC	4 cut(s)	165, 210, 417, 508
DraIII	CACNNNGTG	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	489
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	458
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	5 cut(s)	172, 230, 269, 277, 564
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	5 cut(s)	168, 226, 265, 273, 560
FauNDI	CATATG	2 cut(s)	411, 524
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	52, 339
FokI	GGATG	1 cut(s)	543
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	52, 339
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	52, 339
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	116, 301
HapII	CCGG	2 cut(s)	117, 163
HgaI	GACGC	2 cut(s)	101, 306
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	2 cut(s)	93, 317
Hin1II	CATG	5 cut(s)	172, 230, 269, 277, 564
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	3 cut(s)	158, 270, 277
HpaII	CCGG	2 cut(s)	117, 163
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	4 cut(s)	43, 147, 322, 372
Hpy188III	TCNNGA	6 cut(s)	14, 89, 274, 281, 310, 331
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	4 cut(s)	4, 409, 545, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 74, 443
HpyF3I	CTNAG	4 cut(s)	12, 103, 393, 495
HpySE526I	ACGT	1 cut(s)	582
Hsp92I	GRCGYC	2 cut(s)	93, 317
Hsp92II	CATG	5 cut(s)	172, 230, 269, 277, 564
HspAI	GCGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	165, 210, 417, 508
LmnI	GCTCC	3 cut(s)	119, 501, 569
Lsp1109I	GCAGC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	4 cut(s)	167, 212, 419, 510
MboI	GATC	4 cut(s)	165, 210, 417, 508
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	2 cut(s)	48, 124
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	3 cut(s)	300, 547, 603
MnlI	CCTC	8 cut(s)	41, 96, 190, 193, 286, 327, 481, 492
MroXI	GAANNNNTTC	1 cut(s)	484
MspI	CCGG	2 cut(s)	117, 163
MspR9I	CCNGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	43, 74, 443
NciI	CCSGG	1 cut(s)	163
NdeI	CATATG	2 cut(s)	411, 524
NdeII	GATC	4 cut(s)	165, 210, 417, 508
NlaIII	CATG	5 cut(s)	172, 230, 269, 277, 564
NlaIV	GGNNCC	3 cut(s)	351, 399, 459
NmeAIII	GCCGAG	2 cut(s)	121, 367
NmuCI	GTSAC	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	188
PagI	TCATGA	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	270, 277
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	53, 340
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	458
PspN4I	GGNNCC	3 cut(s)	351, 399, 459
PspPI	GGNCC	2 cut(s)	114, 458
PspPPI	RGGWCCY	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	124
SatI	GCNGC	2 cut(s)	52, 339
Sau3AI	GATC	4 cut(s)	165, 210, 417, 508
Sau96I	GGNCC	2 cut(s)	114, 458
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	48, 124
SfuI	TTCGAA	1 cut(s)	188
SinI	GGWCC	1 cut(s)	458
SmlI	CTYRAG	3 cut(s)	87, 472, 512
SmoI	CTYRAG	3 cut(s)	87, 472, 512
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	2 cut(s)	28, 52
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	124
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	4 cut(s)	24, 129, 188, 309
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	270, 277
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	243, 262, 290
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	484
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.