Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010806

Physical Location & Seq

Genomic Coordinates Forward (+)

8422455 .. 8425331

Gene Structure 2877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1118500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAGTTCTCCCAGGAAGACTTCGATCGCCTCTTGCTCTTCGAGCACACACGCAAAACCGCCGAAGTTAACTACGCCAAGAACCCTCTCGACGCCGATAATTTGACGAAATGGGGAGGAGCGCTGCTTGAACTGTCGCAGTTTCAGAGCATTGCGGATTCGAAGAGCATGATTACTGATTGCATCTCGAAGCTGGAGGAGGCTTTGCAGATAAATCCCACGAAGCACGATGCTCTGTGGTGCCTAGGAAATGCCCACACCTCTTTTGCATTTCTGACCCCTGATCTCGGCGAGGCAAGGCCTTATTTCGATAAGGCCACTGAGTTTTTCCAGAGGGCGGCCGATGAGGACCCCGGTAACGAGCTTTATCAGAAGTCCTTAGAAGTTACATCTAAGGCACCAGAATTGCATATGGAGATCCATAAGCATGGACTGGGACCGTTGGGTCAGCAAACTCTGGGTGGGGGACCTGCTCCTTCATCATCCAGTACAAAGAGTTCCAAGACCAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGGTTATCCTTGCTGTTGGCATTGTTGCATGGGTTGGAATGGCAAAATCCCACATGCCACCACCACCCCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

207

Amino Acids

22.76

Weight (kDa)

5.79

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	8 - 197	9.1e-96	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27390 AT1G27390
fragaria_vesca	FvH4_4g23830
malus_domestica	MD13G1118400.v1.1 MD16G1118500.v1.1
prunus_persica	Prupe.1G226600_v2.0.a1 Prupe.1G226600_v2.0.a1
pyrus_communis	pycom13g10310 pycom16g10150
rosa_chinensis	RchiOBHm_Chr4g0430391
rosa_laevigata	RLG00000006980
rosa_multiflora	Rmu_co8521431.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372180
rosa_rugosa	Rorug04G0242700 Rorug04G0242700
rosa_samantha	Rh4AG299200 Rh4BG305900 Rh4CG321800 Rh4DG303100
rosa_wichuraiana	Rw4G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	444
Acc36I	ACCTGC	1 cut(s)	478
AccB1I	GGYRCC	2 cut(s)	240, 397
AciI	CCGC	3 cut(s)	60, 155, 338
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	490
AfeI	AGCGCT	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	287, 337
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	2 cut(s)	193, 364
AluI	AGCT	2 cut(s)	193, 364
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	412
Aor51HI	AGCGCT	1 cut(s)	123
AoxI	GGCC	3 cut(s)	299, 315, 339
ApeKI	GCWGC	1 cut(s)	124
AspA2I	CCTAGG	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	3 cut(s)	349, 437, 467
AsuC2I	CCSGG	1 cut(s)	354
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	3 cut(s)	349, 437, 467
AvrII	CCTAGG	1 cut(s)	244
BanI	GGYRCC	2 cut(s)	240, 397
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	478
BisI	GCNGC	2 cut(s)	125, 339
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	2 cut(s)	126, 340
Bme1390I	CCNGG	2 cut(s)	14, 354
Bme18I	GGWCC	3 cut(s)	349, 437, 467
BmgT120I	GGNCC	3 cut(s)	349, 437, 467
BmiI	GGNNCC	5 cut(s)	242, 351, 399, 438, 468
BmrFI	CCNGG	2 cut(s)	14, 354
BmrI	ACTGGG	1 cut(s)	443
BmsI	GCATC	2 cut(s)	192, 220
BmuI	ACTGGG	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	12, 244, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 337
Bse1I	ACTGG	2 cut(s)	438, 486
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	3 cut(s)	12, 244, 352
BseGI	GGATG	2 cut(s)	482, 548
BseLI	CCNNNNNNNGG	2 cut(s)	287, 337
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	438, 486
BseRI	GAGGAG	2 cut(s)	132, 212
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	111
Bsh1285I	CGRYCG	2 cut(s)	28, 342
BshFI	GGCC	3 cut(s)	301, 317, 341
BshNI	GGYRCC	2 cut(s)	240, 397
BsiEI	CGRYCG	2 cut(s)	28, 342
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	2 cut(s)	450, 480
BslI	CCNNNNNNNGG	2 cut(s)	287, 337
BsmFI	GGGAC	2 cut(s)	450, 480
BsnI	GGCC	3 cut(s)	301, 317, 341
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	25, 283, 417, 520
BspACI	CCGC	3 cut(s)	60, 155, 338
BspANI	GGCC	3 cut(s)	301, 317, 341
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	5 cut(s)	242, 351, 399, 438, 468
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	1 cut(s)	412
BspQI	GCTCTTC	3 cut(s)	44, 158, 506
BspT104I	TTCGAA	1 cut(s)	161
BspT107I	GGYRCC	2 cut(s)	240, 397
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	438, 486
BssECI	CCNNGG	3 cut(s)	12, 244, 352
BssMI	GATC	4 cut(s)	25, 283, 417, 520
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	135, 441
Bst6I	CTCTTC	3 cut(s)	44, 158, 506
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	321, 379, 393
BstF5I	GGATG	2 cut(s)	482, 548
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	4 cut(s)	28, 286, 420, 523
BstMBI	GATC	4 cut(s)	25, 283, 417, 520
BstMCI	CGRYCG	2 cut(s)	28, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	12, 352
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	417
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	301, 317, 341
BtsCI	GGATG	2 cut(s)	482, 548
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	318, 523
BveI	ACCTGC	1 cut(s)	478
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	349, 437, 467
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	4 cut(s)	169, 428, 573, 598
CviJI	RGCY	6 cut(s)	193, 203, 301, 317, 341, 364
CviKI_1	RGCY	6 cut(s)	193, 203, 301, 317, 341, 364
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	3 cut(s)	321, 379, 393
DpnI	GATC	4 cut(s)	27, 285, 419, 522
DpnII	GATC	4 cut(s)	25, 283, 417, 520
DrdI	GACNNNNNNGTC	1 cut(s)	444
DseDI	GACNNNNNNGTC	1 cut(s)	444
EaeI	YGGCCR	1 cut(s)	339
EagI	CGGCCG	1 cut(s)	339
Eam1104I	CTCTTC	3 cut(s)	44, 158, 506
EarI	CTCTTC	3 cut(s)	44, 158, 506
EclXI	CGGCCG	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	301
Eco47I	GGWCC	3 cut(s)	349, 437, 467
Eco47III	AGCGCT	1 cut(s)	123
Eco52I	CGGCCG	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	545
EcoO109I	RGGNCCY	2 cut(s)	349, 467
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	4 cut(s)	172, 431, 576, 601
FaiI	YATR	9 cut(s)	170, 411, 413, 423, 429, 531, 536, 574, 599
FaqI	GGGAC	2 cut(s)	450, 480
FatI	CATG	4 cut(s)	168, 427, 572, 597
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	125, 339
FokI	GGATG	2 cut(s)	469, 555
Fsp4HI	GCNGC	2 cut(s)	125, 339
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	2 cut(s)	125, 339
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	301, 317, 341
HapII	CCGG	1 cut(s)	354
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	172, 431, 576, 601
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	158
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	354
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	4 cut(s)	147, 276, 372, 525
Hpy188III	TCNNGA	3 cut(s)	89, 187, 331
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	2 cut(s)	135, 441
HpyCH4V	TGCA	6 cut(s)	4, 183, 208, 269, 409, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	321, 379, 393
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	172, 431, 576, 601
HspAI	GCGC	1 cut(s)	122
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	25, 283, 417, 520
LguI	GCTCTTC	3 cut(s)	44, 158, 506
LmnI	GCTCC	2 cut(s)	119, 478
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	192, 220
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	356, 385
MalI	GATC	4 cut(s)	27, 285, 419, 522
MboI	GATC	4 cut(s)	25, 283, 417, 520
MboII	GAAGA	4 cut(s)	29, 31, 175, 523
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	100, 404
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	9 cut(s)	41, 96, 110, 190, 193, 271, 286, 327, 340
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	2 cut(s)	14, 354
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	354
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	4 cut(s)	25, 283, 417, 520
NlaIII	CATG	4 cut(s)	172, 431, 576, 601
NlaIV	GGNNCC	5 cut(s)	242, 351, 399, 438, 468
NmeAIII	GCCGAG	1 cut(s)	267
NspI	RCATGY	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	301
PciSI	GCTCTTC	3 cut(s)	44, 158, 506
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	126, 340
Ple19I	CGATCG	1 cut(s)	28
PpuMI	RGGWCCY	2 cut(s)	349, 467
Psp5II	RGGWCCY	2 cut(s)	349, 467
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	5 cut(s)	242, 351, 399, 438, 468
PspPI	GGNCC	3 cut(s)	349, 437, 467
PspPPI	RGGWCCY	2 cut(s)	349, 467
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PsuI	RGATCY	1 cut(s)	417
PvuI	CGATCG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	426
SapI	GCTCTTC	3 cut(s)	44, 158, 506
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	125, 339
Sau3AI	GATC	4 cut(s)	25, 283, 417, 520
Sau96I	GGNCC	3 cut(s)	349, 437, 467
ScrFI	CCNGG	2 cut(s)	14, 354
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	4 cut(s)	195, 263, 366, 472
SfaNI	GCATC	2 cut(s)	192, 220
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	3 cut(s)	349, 437, 467
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	100, 404
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	3 cut(s)	60, 155, 338
SspMI	CTAG	1 cut(s)	245
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	12, 352
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	135, 441
TaqI	TCGA	6 cut(s)	24, 42, 90, 161, 188, 309
TasI	AATT	2 cut(s)	100, 404
TatI	WGTACW	1 cut(s)	488
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	325, 523
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	468
TspRI	CASTG	2 cut(s)	325, 523
VpaK11BI	GGWCC	3 cut(s)	349, 437, 467
XceI	RCATGY	1 cut(s)	601
XmaJI	CCTAGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.