Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010806

Physical Location & Seq

Genomic Coordinates Reverse (-)

61230045 .. 61235291

Gene Structure 5247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG299200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCAGTTCTCTCAGGACGACTTCGACCGCCTCTTGCTCTCCGAGCACAGCCGCAAGACCTGCGAAGCTCACTACGCCAAGAACCCTCAAGACGCCGAGAACTTAGTCAAATGGGCCGGAGCTCTGCTCGAACTGTCGCAGTTTCAGAGTATTGCCGACTCCCGGATCATGCTTGATGATTGTATTTCGAAGCTGGAGGAGGCTCTGGTGATCAATCCTACAAAGCATGAAGCTCTATGGTGTCTTGGGAACGCGCATACATCTCATGGATTCATGAATCCTGACTTGGACGAGGCAAGGCCTTATTTCGAGAAGGCGTCGGAGTATTTCCAGAGGGCTGCCGAGCAGGAACCTGCCAATGAGCTTTATCAGAAGTCCATAGAAGTCACAGCTAAGGTATTTGGACTCTTATTTCTTTCGCGGATGAGTGCTGTAGTTATATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

148

Amino Acids

16.86

Weight (kDa)

4.95

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	8 - 133	2.6e-59	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27390 AT1G27390
fragaria_vesca	FvH4_4g23830
malus_domestica	MD13G1118400.v1.1 MD16G1118500.v1.1
prunus_persica	Prupe.1G226600_v2.0.a1 Prupe.1G226600_v2.0.a1
pyrus_communis	pycom13g10310 pycom16g10150
rosa_chinensis	RchiOBHm_Chr4g0430391
rosa_laevigata	RLG00000006980
rosa_multiflora	Rmu_co8521431.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372180
rosa_rugosa	Rorug04G0242700 Rorug04G0242700
rosa_samantha	Rh4AG299200 Rh4BG305900 Rh4CG321800 Rh4DG303100
rosa_wichuraiana	Rw4G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	68, 361
AccII	CGCG	2 cut(s)	254, 421
AciI	CCGC	3 cut(s)	28, 52, 421
AclWI	GGATC	1 cut(s)	173
AcyI	GRCGYC	2 cut(s)	93, 317
AfiI	CCNNNNNNNGG	1 cut(s)	162
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	6 cut(s)	68, 122, 193, 233, 364, 392
AluI	AGCT	6 cut(s)	68, 122, 193, 233, 364, 392
Alw21I	GWGCWC	2 cut(s)	48, 124
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	2 cut(s)	114, 299
ApeKI	GCWGC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	48, 124
BbvI	GCAGC	1 cut(s)	325
BclI	TGATCA	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	2 cut(s)	68, 361
BisI	GCNGC	2 cut(s)	52, 339
BlsI	GCNGC	2 cut(s)	53, 340
Bme1390I	CCNGG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	163
BsaHI	GRCGYC	2 cut(s)	93, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	2 cut(s)	254, 421
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	116, 301
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	48, 124
BsiSI	CCGG	2 cut(s)	117, 163
BslI	CCNNNNNNNGG	1 cut(s)	162
BsnI	GGCC	2 cut(s)	116, 301
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	48, 124
Bsp143I	GATC	2 cut(s)	165, 210
BspACI	CCGC	3 cut(s)	28, 52, 421
BspANI	GGCC	2 cut(s)	116, 301
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	2 cut(s)	254, 421
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	351
BspMI	ACCTGC	2 cut(s)	68, 361
BspPI	GGATC	1 cut(s)	173
BspT104I	TTCGAA	1 cut(s)	188
BssMI	GATC	2 cut(s)	165, 210
BssNI	GRCGYC	2 cut(s)	93, 317
Bst4CI	ACNGT	1 cut(s)	135
BstACI	GRCGYC	2 cut(s)	93, 317
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	12, 103, 393
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	2 cut(s)	254, 421
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	168, 213
BstMBI	GATC	2 cut(s)	165, 210
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 60, 74
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	2 cut(s)	254, 421
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	116, 301
BtsCI	GGATG	1 cut(s)	429
BveI	ACCTGC	2 cut(s)	68, 361
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	2 cut(s)	101, 306
CviAII	CATG	4 cut(s)	169, 227, 266, 274
DdeI	CTNAG	3 cut(s)	12, 103, 393
DpnI	GATC	2 cut(s)	167, 212
DpnII	GATC	2 cut(s)	165, 210
Ecl136II	GAGCTC	1 cut(s)	122
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	4 cut(s)	172, 230, 269, 277
FaiI	YATR	9 cut(s)	170, 228, 238, 258, 267, 275, 380, 440, 442
FatI	CATG	4 cut(s)	168, 226, 265, 273
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	52, 339
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	52, 339
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	52, 339
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	116, 301
HapII	CCGG	2 cut(s)	117, 163
HgaI	GACGC	2 cut(s)	101, 306
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	2 cut(s)	93, 317
Hin1II	CATG	4 cut(s)	172, 230, 269, 277
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	4 cut(s)	158, 270, 277, 405
HpaII	CCGG	2 cut(s)	117, 163
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	4 cut(s)	43, 147, 322, 372
Hpy188III	TCNNGA	6 cut(s)	14, 89, 274, 281, 310, 331
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 60, 74
HpyF3I	CTNAG	3 cut(s)	12, 103, 393
Hsp92I	GRCGYC	2 cut(s)	93, 317
Hsp92II	CATG	4 cut(s)	172, 230, 269, 277
HspAI	GCGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	165, 210
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	9 cut(s)	73, 130, 176, 179, 191, 294, 332, 344, 366
Lsp1109I	GCAGC	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	167, 212
MboI	GATC	2 cut(s)	165, 210
MhlI	GDGCHC	2 cut(s)	48, 124
MlyI	GAGTC	2 cut(s)	152, 399
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	6 cut(s)	41, 96, 190, 193, 286, 327
MseI	TTAA	1 cut(s)	445
MspI	CCGG	2 cut(s)	117, 163
MspR9I	CCNGG	1 cut(s)	163
MvnI	CGCG	2 cut(s)	254, 421
MwoI	GCNNNNNNNGC	3 cut(s)	43, 60, 74
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	165, 210
NlaIII	CATG	4 cut(s)	172, 230, 269, 277
NlaIV	GGNNCC	1 cut(s)	351
NmeAIII	GCCGAG	2 cut(s)	121, 367
NmuCI	GTSAC	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	188
PagI	TCATGA	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	270, 277
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	53, 340
PleI	GAGTC	2 cut(s)	152, 399
PpsI	GAGTC	2 cut(s)	152, 399
Psp124BI	GAGCTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	445
SatI	GCNGC	2 cut(s)	52, 339
Sau3AI	GATC	2 cut(s)	165, 210
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	152, 399
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	48, 124
SetI	ASST	9 cut(s)	62, 70, 124, 195, 235, 355, 366, 394, 399
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	3 cut(s)	28, 52, 421
SstI	GAGCTC	1 cut(s)	124
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	135
TaqI	TCGA	4 cut(s)	24, 129, 188, 309
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	270, 277
Tru1I	TTAA	1 cut(s)	445
Tru9I	TTAA	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	243, 262, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.