Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010806

Physical Location & Seq

Genomic Coordinates Forward (+)

6896196 .. 6898107

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAGTTCTCTCAGGAAGACTTCGATCGCCTCTTGCTATTCGAACACGCCCGCAAAACCGCCGAAGTTAACTACGCTAAGAACCCTCTCGACGCCGATAATTTGACGAAATGGGGAGGAGCGCTCCTCGAACTGTCGCAGTTTCAGAGCATTGCGGATTCGAAGAGCATGATTACTGATTGCATTTCGAAGCTGGAGGAGGCTTTGCAGATAAATCCCACGAAGCATGATGCGCTGTGGTGCCTAGGAAATGCCCACACCTCTTTTGCATTTCTCACCCCTGATCTCGACGAGGCAAGGCCTTATTTAGATAAGGCCACTGGGTTTTTCCAGAGGGCGGCGGATGAGGACCCGGGTAATGAGCTTTATCAGAAGTCCTTAGAAGTCACATCTAAGGCACCAGAATTGCATATGGAGATCCATAAGCATGGGCTTGGACCATTGGGTCAACAAACTCTGGGTGGGGGTCCTGCTCCTTCTTCATCCAGTGCAAAGAGTTCCAAGACCAAGAAGAGCAGTGATCTGAAGTATGACATATTGGGATGGGTTATACTTGCTGTTGGCATTGTTGCATGGGTTGGAATGGCGAAATCCCACATGCCACCGCCACCCCAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

207

Amino Acids

22.65

Weight (kDa)

5.79

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	8 - 197	7.5e-95	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27390 AT1G27390
fragaria_vesca	FvH4_4g23830
malus_domestica	MD13G1118400.v1.1 MD16G1118500.v1.1
prunus_persica	Prupe.1G226600_v2.0.a1 Prupe.1G226600_v2.0.a1
pyrus_communis	pycom13g10310 pycom16g10150
rosa_chinensis	RchiOBHm_Chr4g0430391
rosa_laevigata	RLG00000006980
rosa_multiflora	Rmu_co8521431.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372180
rosa_rugosa	Rorug04G0242700 Rorug04G0242700
rosa_samantha	Rh4AG299200 Rh4BG305900 Rh4CG321800 Rh4DG303100
rosa_wichuraiana	Rw4G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	444
AccB1I	GGYRCC	2 cut(s)	240, 397
AciI	CCGC	6 cut(s)	52, 60, 155, 338, 341, 605
AclWI	GGATC	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	93
AfeI	AGCGCT	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	193, 364
AluI	AGCT	2 cut(s)	193, 364
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	352
Aor51HI	AGCGCT	1 cut(s)	123
AoxI	GGCC	2 cut(s)	299, 315
AspA2I	CCTAGG	1 cut(s)	244
AspLEI	GCGC	2 cut(s)	124, 235
AspS9I	GGNCC	3 cut(s)	349, 437, 467
AsuC2I	CCSGG	2 cut(s)	353, 354
AsuHPI	GGTGA	1 cut(s)	268
AsuII	TTCGAA	3 cut(s)	42, 161, 188
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	3 cut(s)	349, 437, 467
AvrII	CCTAGG	1 cut(s)	244
BanI	GGYRCC	2 cut(s)	240, 397
BbsI	GAAGAC	1 cut(s)	24
BccI	CCATC	1 cut(s)	537
BcnI	CCSGG	2 cut(s)	353, 354
BfaI	CTAG	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	125
BisI	GCNGC	1 cut(s)	339
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	353, 354
Bme18I	GGWCC	3 cut(s)	349, 437, 467
BmeT110I	CYCGRG	1 cut(s)	352
BmgT120I	GGNCC	3 cut(s)	349, 437, 467
BmiI	GGNNCC	4 cut(s)	242, 351, 399, 468
BmrFI	CCNGG	2 cut(s)	353, 354
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	4 cut(s)	108, 140, 111, 143
BpmI	CTGGAG	1 cut(s)	215
Bpu14I	TTCGAA	3 cut(s)	42, 161, 188
BpuMI	CCSGG	2 cut(s)	353, 354
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	244, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	325, 486
Bse3DI	GCAATG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	244, 352
BseGI	GGATG	3 cut(s)	349, 482, 548
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	325, 486
BseRI	GAGGAG	3 cut(s)	116, 132, 212
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	301, 317
BshNI	GGYRCC	2 cut(s)	240, 397
BsiEI	CGRYCG	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	337
BsnI	GGCC	2 cut(s)	301, 317
BsoBI	CYCGRG	1 cut(s)	352
Bsp119I	TTCGAA	3 cut(s)	42, 161, 188
Bsp143I	GATC	4 cut(s)	25, 283, 417, 520
BspACI	CCGC	6 cut(s)	52, 60, 155, 338, 341, 605
BspANI	GGCC	2 cut(s)	301, 317
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	4 cut(s)	242, 351, 399, 468
BspPI	GGATC	1 cut(s)	412
BspQI	GCTCTTC	2 cut(s)	158, 506
BspT104I	TTCGAA	3 cut(s)	42, 161, 188
BspT107I	GGYRCC	2 cut(s)	240, 397
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	325, 486
BssECI	CCNNGG	2 cut(s)	244, 352
BssMI	GATC	4 cut(s)	25, 283, 417, 520
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	2 cut(s)	158, 506
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	3 cut(s)	42, 161, 188
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	4 cut(s)	12, 78, 379, 393
BstF5I	GGATG	3 cut(s)	349, 482, 548
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	124, 235
BstKTI	GATC	4 cut(s)	28, 286, 420, 523
BstMBI	GATC	4 cut(s)	25, 283, 417, 520
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	351, 352
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	301, 317
BtsCI	GGATG	3 cut(s)	349, 482, 548
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	3 cut(s)	318, 493, 523
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	2 cut(s)	124, 235
Cfr13I	GGNCC	3 cut(s)	349, 437, 467
Cfr9I	CCCGGG	1 cut(s)	352
CseI	GACGC	1 cut(s)	101
CviAII	CATG	5 cut(s)	169, 227, 428, 573, 598
CviJI	RGCY	6 cut(s)	193, 203, 301, 317, 364, 433
CviKI_1	RGCY	6 cut(s)	193, 203, 301, 317, 364, 433
DdeI	CTNAG	4 cut(s)	12, 78, 379, 393
DpnI	GATC	4 cut(s)	27, 285, 419, 522
DpnII	GATC	4 cut(s)	25, 283, 417, 520
DrdI	GACNNNNNNGTC	1 cut(s)	444
DseDI	GACNNNNNNGTC	1 cut(s)	444
Eam1104I	CTCTTC	2 cut(s)	158, 506
EarI	CTCTTC	2 cut(s)	158, 506
EciI	GGCGGA	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	301
Eco47I	GGWCC	3 cut(s)	349, 437, 467
Eco47III	AGCGCT	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	352
EcoO109I	RGGNCCY	2 cut(s)	349, 467
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	5 cut(s)	172, 230, 431, 576, 601
FatI	CATG	5 cut(s)	168, 226, 427, 572, 597
FauI	CCCGC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	3 cut(s)	356, 469, 555
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	2 cut(s)	123, 234
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	301, 317
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	2 cut(s)	124, 235
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	172, 230, 431, 576, 601
Hin6I	GCGC	2 cut(s)	122, 233
HinP1I	GCGC	2 cut(s)	122, 233
HincII	GTYRAC	2 cut(s)	70, 449
HindII	GTYRAC	2 cut(s)	70, 449
HinfI	GANTC	1 cut(s)	158
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	70, 449
Hpy188I	TCNGA	3 cut(s)	147, 372, 525
Hpy188III	TCNNGA	4 cut(s)	14, 89, 287, 331
Hpy8I	GTNNAC	2 cut(s)	70, 449
Hpy99I	CGWCG	2 cut(s)	95, 293
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4V	TGCA	7 cut(s)	4, 183, 208, 269, 409, 491, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	4 cut(s)	12, 78, 379, 393
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	172, 230, 431, 576, 601
HspAI	GCGC	2 cut(s)	122, 233
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	25, 283, 417, 520
LguI	GCTCTTC	2 cut(s)	158, 506
LmnI	GCTCC	3 cut(s)	119, 129, 478
LpnPI	CCDG	9 cut(s)	179, 294, 306, 344, 366, 414, 443, 483, 499
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	4 cut(s)	27, 285, 419, 522
MboI	GATC	4 cut(s)	25, 283, 417, 520
MboII	GAAGA	4 cut(s)	29, 175, 471, 523
MflI	RGATCY	1 cut(s)	417
MluCI	AATT	2 cut(s)	100, 404
MmeI	TCCRAC	1 cut(s)	559
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	353, 354
MwoI	GCNNNNNNNGC	1 cut(s)	232
NciI	CCSGG	2 cut(s)	353, 354
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	4 cut(s)	25, 283, 417, 520
NlaIII	CATG	5 cut(s)	172, 230, 431, 576, 601
NlaIV	GGNNCC	4 cut(s)	242, 351, 399, 468
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	601
NspV	TTCGAA	3 cut(s)	42, 161, 188
PceI	AGGCCT	1 cut(s)	301
PciSI	GCTCTTC	2 cut(s)	158, 506
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	340
Ple19I	CGATCG	1 cut(s)	28
PpuMI	RGGWCCY	2 cut(s)	349, 467
Psp5II	RGGWCCY	2 cut(s)	349, 467
PspN4I	GGNNCC	4 cut(s)	242, 351, 399, 468
PspPI	GGNCC	3 cut(s)	349, 437, 467
PspPPI	RGGWCCY	2 cut(s)	349, 467
PsuI	RGATCY	1 cut(s)	417
PvuI	CGATCG	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	426
SapI	GCTCTTC	2 cut(s)	158, 506
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	25, 283, 417, 520
Sau96I	GGNCC	3 cut(s)	349, 437, 467
ScrFI	CCNGG	2 cut(s)	353, 354
SetI	ASST	3 cut(s)	195, 263, 366
SfaNI	GCATC	1 cut(s)	220
SfuI	TTCGAA	3 cut(s)	42, 161, 188
SinI	GGWCC	3 cut(s)	349, 437, 467
SmaI	CCCGGG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	100, 404
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	6 cut(s)	52, 60, 155, 338, 341, 605
SspMI	CTAG	1 cut(s)	245
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	351, 352
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	135
TaqI	TCGA	7 cut(s)	24, 42, 90, 129, 161, 188, 288
TasI	AATT	2 cut(s)	100, 404
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	3 cut(s)	325, 493, 523
TseFI	GTSAC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	471
TspMI	CCCGGG	1 cut(s)	352
TspRI	CASTG	3 cut(s)	325, 493, 523
VpaK11BI	GGWCC	3 cut(s)	349, 437, 467
XceI	RCATGY	1 cut(s)	601
XmaI	CCCGGG	1 cut(s)	352
XmaJI	CCTAGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.