Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010806

Physical Location & Seq

Genomic Coordinates Reverse (-)

26195276 .. 26197764

Gene Structure 2489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCAGTTCTCTCAGGACGACTTCGACCGCCTCATGCTCTCCGAGCACAGCCGCAAGACCTGCGAAGCTCACTACGCCAAGAACCCTCTCGACGCCGAGAATTTAATCAAATGGGCTGGAGCTCTGCTCGAGCTTTCGCAGTTTCAGAGTGTTTCGGACTCCAGGATCATGCTCGATGATTGTATATCGAAGCTGGAGGAGGCTCTGGTGATCAATCCTACGAAGCATGAAGCTCTGTGGTGTTTAGGGAATGCGCATACGTCTCATGGATTCATGAATCCTGACTTGGACGAGGCCAGGCCTTATTTCGAGAAGGCGTCCGAGTATTTCCAGAGGGCTGCCGAGCTGGAACCTGGCAATGAGCTTTATCTGAAGTCCATAGAAGTCACAGCTAAGGCACCAGAGTTGCATACTGAGATCCACAAGCAAGGAATGGCTCAACAGGCACTAGGTGGGGGACCTGCCACTTCCTCGAGTGGAAAGAGCTCCAAGGCTAAGAAGAGCAGTGATTTCAAGTATGACATAGCTGGATGGGTTATCCTTGCACTTGGCATTTTTATATGGGTTGGGGCGAAATCCAATATGCCACCACCACCACCCCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

203

Amino Acids

22.42

Weight (kDa)

5.64

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	8 - 191	7.9e-86	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27390 AT1G27390
fragaria_vesca	FvH4_4g23830
malus_domestica	MD13G1118400.v1.1 MD16G1118500.v1.1
prunus_persica	Prupe.1G226600_v2.0.a1 Prupe.1G226600_v2.0.a1
pyrus_communis	pycom13g10310 pycom16g10150
rosa_chinensis	RchiOBHm_Chr4g0430391
rosa_laevigata	RLG00000006980
rosa_multiflora	Rmu_co8521431.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372180
rosa_rugosa	Rorug04G0242700 Rorug04G0242700
rosa_samantha	Rh4AG299200 Rh4BG305900 Rh4CG321800 Rh4DG303100
rosa_wichuraiana	Rw4G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	255
Acc36I	ACCTGC	2 cut(s)	68, 469
AccB1I	GGYRCC	1 cut(s)	397
AciI	CCGC	2 cut(s)	28, 52
AclWI	GGATC	2 cut(s)	173, 412
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	2 cut(s)	93, 317
AdeI	CACNNNGTG	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	514
AjnI	CCWGG	3 cut(s)	161, 296, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
Alw21I	GWGCWC	3 cut(s)	48, 124, 488
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	173, 412
Ama87I	CYCGRG	2 cut(s)	128, 472
AoxI	GGCC	2 cut(s)	294, 299
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	2 cut(s)	128, 472
AvaII	GGWCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	2 cut(s)	124, 488
Bbv12I	GWGCWC	3 cut(s)	48, 124, 488
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	525
BciT130I	CCWGG	3 cut(s)	163, 298, 354
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	449
BfuAI	ACCTGC	2 cut(s)	68, 469
BisI	GCNGC	2 cut(s)	52, 339
BlsI	GCNGC	2 cut(s)	53, 340
Bme1390I	CCNGG	3 cut(s)	163, 298, 354
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	2 cut(s)	128, 472
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	3 cut(s)	351, 399, 459
BmrFI	CCNGG	3 cut(s)	163, 298, 354
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	3 cut(s)	138, 145, 215
Bpu10I	CCTNAGC	1 cut(s)	393
BsaHI	GRCGYC	2 cut(s)	93, 317
BsaJI	CCNNGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	364
BseBI	CCWGG	3 cut(s)	163, 298, 354
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	2 cut(s)	26, 405
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	296, 301
BshNI	GGYRCC	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	3 cut(s)	48, 124, 488
BsiHKCI	CYCGRG	2 cut(s)	128, 472
BslFI	GGGAC	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	296, 301
BsoBI	CYCGRG	2 cut(s)	128, 472
Bsp1286I	GDGCHC	3 cut(s)	48, 124, 488
Bsp143I	GATC	3 cut(s)	165, 210, 417
BspACI	CCGC	2 cut(s)	28, 52
BspANI	GGCC	2 cut(s)	296, 301
BspCNI	CTCAG	2 cut(s)	25, 406
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	351, 399, 459
BspMI	ACCTGC	2 cut(s)	68, 469
BspPI	GGATC	2 cut(s)	173, 412
BspQI	GCTCTTC	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	3 cut(s)	165, 210, 417
BssNI	GRCGYC	2 cut(s)	93, 317
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	3 cut(s)	163, 298, 354
Bst6I	CTCTTC	1 cut(s)	494
BstACI	GRCGYC	2 cut(s)	93, 317
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	12, 393, 414, 495
BstF5I	GGATG	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	168, 213, 420
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	3 cut(s)	165, 210, 417
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 60, 74, 443
BstNI	CCWGG	3 cut(s)	163, 298, 354
BstSCI	CCNGG	3 cut(s)	161, 296, 352
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	296, 301
BtsCI	GGATG	1 cut(s)	536
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	511
BveI	ACCTGC	2 cut(s)	68, 469
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	2 cut(s)	101, 306
CviAII	CATG	5 cut(s)	34, 169, 227, 266, 274
DdeI	CTNAG	4 cut(s)	12, 393, 414, 495
DpnI	GATC	3 cut(s)	167, 212, 419
DpnII	GATC	3 cut(s)	165, 210, 417
DraIII	CACNNNGTG	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
Ecl136II	GAGCTC	2 cut(s)	122, 486
Eco130I	CCWWGG	1 cut(s)	489
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	2 cut(s)	124, 488
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	2 cut(s)	122, 486
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	2 cut(s)	128, 472
EcoICRI	GAGCTC	2 cut(s)	122, 486
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	3 cut(s)	161, 296, 352
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	124, 488
ErhI	CCWWGG	1 cut(s)	489
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	5 cut(s)	37, 172, 230, 269, 277
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	5 cut(s)	33, 168, 226, 265, 273
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	52, 339
FokI	GGATG	1 cut(s)	543
FriOI	GRGCYC	2 cut(s)	124, 488
Fsp4HI	GCNGC	2 cut(s)	52, 339
FspAI	RTGCGCAY	1 cut(s)	255
FspBI	CTAG	1 cut(s)	449
FspI	TGCGCA	1 cut(s)	255
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	52, 339
GsuI	CTGGAG	3 cut(s)	138, 145, 215
HaeIII	GGCC	2 cut(s)	296, 301
HgaI	GACGC	2 cut(s)	101, 306
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	2 cut(s)	93, 317
Hin1II	CATG	5 cut(s)	37, 172, 230, 269, 277
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	3 cut(s)	158, 270, 277
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	43, 147, 157, 322, 372
Hpy188III	TCNNGA	6 cut(s)	14, 89, 274, 281, 310, 331
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	4, 409, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 60, 74, 443
HpyF3I	CTNAG	4 cut(s)	12, 393, 414, 495
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	2 cut(s)	93, 317
Hsp92II	CATG	5 cut(s)	37, 172, 230, 269, 277
HspAI	GCGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	165, 210, 417
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	2 cut(s)	119, 491
Lsp1109I	GCAGC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	167, 212, 419
MboI	GATC	3 cut(s)	165, 210, 417
MboII	GAAGA	1 cut(s)	511
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	3 cut(s)	48, 124, 488
MluCI	AATT	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	7 cut(s)	41, 96, 190, 193, 286, 327, 481
MseI	TTAA	1 cut(s)	104
MspR9I	CCNGG	3 cut(s)	163, 298, 354
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	163, 298, 354
MwoI	GCNNNNNNNGC	4 cut(s)	43, 60, 74, 443
NdeII	GATC	3 cut(s)	165, 210, 417
NlaIII	CATG	5 cut(s)	37, 172, 230, 269, 277
NlaIV	GGNNCC	3 cut(s)	351, 399, 459
NmeAIII	GCCGAG	2 cut(s)	121, 367
NmuCI	GTSAC	1 cut(s)	385
NsbI	TGCGCA	1 cut(s)	255
PaeR7I	CTCGAG	2 cut(s)	128, 472
PagI	TCATGA	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	494
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	270, 277
PfoI	TCCNGGA	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	53, 340
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	458
Psp124BI	GAGCTC	2 cut(s)	124, 488
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	3 cut(s)	161, 296, 352
PspGI	CCWGG	3 cut(s)	161, 296, 352
PspN4I	GGNNCC	3 cut(s)	351, 399, 459
PspPI	GGNCC	1 cut(s)	458
PspPPI	RGGWCCY	1 cut(s)	458
PspXI	VCTCGAGB	2 cut(s)	128, 472
PsuI	RGATCY	1 cut(s)	417
SacI	GAGCTC	2 cut(s)	124, 488
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	2 cut(s)	52, 339
Sau3AI	GATC	3 cut(s)	165, 210, 417
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	163, 298, 354
SduI	GDGCHC	3 cut(s)	48, 124, 488
Sfr274I	CTCGAG	2 cut(s)	128, 472
SinI	GGWCC	1 cut(s)	458
SlaI	CTCGAG	2 cut(s)	128, 472
SmlI	CTYRAG	2 cut(s)	128, 472
SmoI	CTYRAG	2 cut(s)	128, 472
Sse9I	AATT	1 cut(s)	100
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	2 cut(s)	28, 52
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	2 cut(s)	124, 488
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	3 cut(s)	161, 296, 352
StyI	CCWWGG	1 cut(s)	489
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	7 cut(s)	24, 90, 129, 174, 188, 309, 473
TasI	AATT	1 cut(s)	100
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	270, 277
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	243, 262, 290
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	1 cut(s)	100
XhoI	CTCGAG	2 cut(s)	128, 472
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.