Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010806

Physical Location & Seq

Genomic Coordinates Reverse (-)

23962377 .. 23967842

Gene Structure 5466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G226600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCAATTCTCTCAGGACGACTTCGATCGCCTTTTGCTCTTCGAGCACACTCGCAAAACTGCCGAAGTTAATTACGCCAAGAACCCTCTCGATGCCGATAATTTAACTAAATGGGGAGGAGCGTTGCTCGAACTATCGCAGTTTCAAAGCCTTGCAGATTCGAAGGGCATGATTAATGATTCTATTTCGAAGTTGGAGGAGGCTTTGCAAATAAACCCCGCGAAGCATGATGCACTATGGTGCCTAGGAAATGCCCACACCTCTTTCGCATTTCTGACCCCTGACCTTGACGAGGCAAGGCCTTATTTTGATAAGGCGTCTGAATTTTTCCAAAAGGCTGCGGATGAGGATCCTGGCAACGAGCTTTATCAGAAGTCCTTAGAAGTCACATCTAAGGCACCAGAATTACATATGGAGATCCATAAGCAAGGGATGGGTCAGCAAATTCTGGGTGGGGGACCTGCTGCTCCATCATCCAGTACAAAGACGAAGACCAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGGTTATCCTTGCAGTTGGCATTGTTGCATGGGTTGGAATGGCGAAATCCAACATGCCACCACCACCCCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

203

Amino Acids

22.34

Weight (kDa)

5.37

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27390 AT1G27390
fragaria_vesca	FvH4_4g23830
malus_domestica	MD13G1118400.v1.1 MD16G1118500.v1.1
prunus_persica	Prupe.1G226600_v2.0.a1 Prupe.1G226600_v2.0.a1
pyrus_communis	pycom13g10310 pycom16g10150
rosa_chinensis	RchiOBHm_Chr4g0430391
rosa_laevigata	RLG00000006980
rosa_multiflora	Rmu_co8521431.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372180
rosa_rugosa	Rorug04G0242700 Rorug04G0242700
rosa_samantha	Rh4AG299200 Rh4BG305900 Rh4CG321800 Rh4DG303100
rosa_wichuraiana	Rw4G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AccB1I	GGYRCC	2 cut(s)	240, 397
AccII	CGCG	1 cut(s)	221
AciI	CCGC	2 cut(s)	219, 341
AclWI	GGATC	3 cut(s)	344, 357, 412
AcsI	RAATTY	2 cut(s)	323, 444
AcuI	CTGAAG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	352
AleI	CACNNNNGTG	1 cut(s)	238
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	3 cut(s)	344, 357, 412
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	338, 464
ApoI	RAATTY	2 cut(s)	323, 444
AseI	ATTAAT	1 cut(s)	174
AspA2I	CCTAGG	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	458
AsuII	TTCGAA	2 cut(s)	161, 188
AvaII	GGWCC	1 cut(s)	458
AvrII	CCTAGG	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	349
BanI	GGYRCC	2 cut(s)	240, 397
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	325, 451
BccI	CCATC	3 cut(s)	427, 478, 525
BciT130I	CCWGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	469
BisI	GCNGC	2 cut(s)	339, 465
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	2 cut(s)	340, 466
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	4 cut(s)	242, 351, 399, 459
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	2 cut(s)	82, 220
BpiI	GAAGAC	1 cut(s)	497
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
Bpu14I	TTCGAA	2 cut(s)	161, 188
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	4 cut(s)	349, 438, 473, 536
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	2 cut(s)	132, 212
BseXI	GCAGC	2 cut(s)	325, 451
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	301
BshNI	GGYRCC	2 cut(s)	240, 397
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	301
Bsp119I	TTCGAA	2 cut(s)	161, 188
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	25, 349, 417, 508
BspACI	CCGC	2 cut(s)	219, 341
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	4 cut(s)	242, 351, 399, 459
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	3 cut(s)	344, 357, 412
BspQI	GCTCTTC	2 cut(s)	44, 494
BspT104I	TTCGAA	2 cut(s)	161, 188
BspT107I	GGYRCC	2 cut(s)	240, 397
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	25, 349, 417, 508
BssNI	GRCGYC	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	354
Bst6I	CTCTTC	2 cut(s)	44, 494
BstACI	GRCGYC	1 cut(s)	317
BstBI	TTCGAA	2 cut(s)	161, 188
BstDEI	CTNAG	3 cut(s)	12, 379, 393
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	4 cut(s)	349, 438, 473, 536
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	4 cut(s)	28, 352, 420, 511
BstMBI	GATC	4 cut(s)	25, 349, 417, 508
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	325, 451
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	2 cut(s)	349, 417
BstYI	RGATCY	2 cut(s)	349, 417
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	4 cut(s)	349, 438, 473, 536
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	511
BveI	ACCTGC	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	4 cut(s)	169, 227, 561, 586
CviJI	RGCY	5 cut(s)	150, 203, 301, 338, 364
CviKI_1	RGCY	5 cut(s)	150, 203, 301, 338, 364
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	3 cut(s)	12, 379, 393
DpnI	GATC	4 cut(s)	27, 351, 419, 510
DpnII	GATC	4 cut(s)	25, 349, 417, 508
Eam1104I	CTCTTC	2 cut(s)	44, 494
EarI	CTCTTC	2 cut(s)	44, 494
Eco130I	CCWWGG	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	533
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	4 cut(s)	172, 230, 564, 589
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	4 cut(s)	168, 226, 560, 585
FauI	CCCGC	1 cut(s)	226
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	339, 465
FokI	GGATG	4 cut(s)	356, 445, 460, 543
Fsp4HI	GCNGC	2 cut(s)	339, 465
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	2 cut(s)	339, 465
HaeIII	GGCC	1 cut(s)	301
HgaI	GACGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	4 cut(s)	172, 230, 564, 589
HinfI	GANTC	2 cut(s)	158, 179
Hpy188I	TCNGA	4 cut(s)	276, 322, 372, 513
Hpy188III	TCNNGA	2 cut(s)	14, 89
HpyAV	CCTTC	1 cut(s)	157
HpyCH4V	TGCA	6 cut(s)	4, 155, 208, 233, 545, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	12, 379, 393
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	4 cut(s)	172, 230, 564, 589
Kzo9I	GATC	4 cut(s)	25, 349, 417, 508
LguI	GCTCTTC	2 cut(s)	44, 494
LmnI	GCTCC	2 cut(s)	119, 472
LpnPI	CCDG	7 cut(s)	294, 339, 366, 414, 434, 474, 490
Lsp1109I	GCAGC	2 cut(s)	325, 451
LweI	GCATC	2 cut(s)	82, 220
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	4 cut(s)	27, 351, 419, 510
MboI	GATC	4 cut(s)	25, 349, 417, 508
MboII	GAAGA	3 cut(s)	31, 502, 511
MflI	RGATCY	2 cut(s)	349, 417
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	6 cut(s)	5, 70, 100, 323, 404, 444
MmeI	TCCRAC	3 cut(s)	174, 547, 606
MnlI	CCTC	7 cut(s)	96, 110, 190, 193, 271, 286, 340
MseI	TTAA	3 cut(s)	69, 104, 174
MslI	CAYNNNNRTG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	4 cut(s)	25, 349, 417, 508
NlaIII	CATG	4 cut(s)	172, 230, 564, 589
NlaIV	GGNNCC	4 cut(s)	242, 351, 399, 459
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	589
NspV	TTCGAA	2 cut(s)	161, 188
OliI	CACNNNNGTG	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	301
PciSI	GCTCTTC	2 cut(s)	44, 494
PfeI	GAWTC	2 cut(s)	158, 179
PkrI	GCNGC	2 cut(s)	340, 466
Ple19I	CGATCG	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	458
PshBI	ATTAAT	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	242, 351, 399, 459
PspPI	GGNCC	1 cut(s)	458
PspPPI	RGGWCCY	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	349, 417
PvuI	CGATCG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	238
SapI	GCTCTTC	2 cut(s)	44, 494
SaqAI	TTAA	3 cut(s)	69, 104, 174
SatI	GCNGC	2 cut(s)	339, 465
Sau3AI	GATC	4 cut(s)	25, 349, 417, 508
Sau96I	GGNCC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	4 cut(s)	263, 288, 366, 463
SfaNI	GCATC	2 cut(s)	82, 220
SfuI	TTCGAA	2 cut(s)	161, 188
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	238
Sse9I	AATT	6 cut(s)	5, 70, 100, 323, 404, 444
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	2 cut(s)	219, 341
SspMI	CTAG	1 cut(s)	245
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	244
TaqI	TCGA	6 cut(s)	24, 42, 90, 129, 161, 188
TasI	AATT	6 cut(s)	5, 70, 100, 323, 404, 444
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	158, 179
Tru1I	TTAA	3 cut(s)	69, 104, 174
Tru9I	TTAA	3 cut(s)	69, 104, 174
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	2 cut(s)	338, 464
Tsp45I	GTSAC	1 cut(s)	385
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	458
VspI	ATTAAT	1 cut(s)	174
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	2 cut(s)	323, 444
XceI	RCATGY	1 cut(s)	589
XmaJI	CCTAGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.