Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8521431.1

Orthogroup ID

OG0010806

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2280

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8521431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

aacttagtcaaatgggccggagctctactcgaactgtcgcagtttcagagtattgccgactcccggatcatgcttgatgattgtatttcgaagctggaggaggctctggcgatcaatcctacaaagcatgaagctctatggtgtcttgggaacgcgcatacatctcatggattcatgaatcctgacttggacgaggcaaggccttatttcgagaaggcgtcggagtatttccagagggctgccgagcaggaacctgccaatgagctttatcagaagtccatagaagtcacagctaaggcaccagagttgcatatggagatccataagcaaggaatggctcaacaggcactaggtgggggacctgccacttcctcaagtggaaagagttccaaggctaagaggagcagtgatctcaagtatgacatatgtggatggattatccttgcagttggcatttttgcatgggttggagcgaaatccaacgtgccaccacccccacccccaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

169

Amino Acids

18.5

Weight (kDa)

5.96

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27390 AT1G27390
fragaria_vesca	FvH4_4g23830
malus_domestica	MD13G1118400.v1.1 MD16G1118500.v1.1
prunus_persica	Prupe.1G226600_v2.0.a1 Prupe.1G226600_v2.0.a1
pyrus_communis	pycom13g10310 pycom16g10150
rosa_chinensis	RchiOBHm_Chr4g0430391
rosa_laevigata	RLG00000006980
rosa_multiflora	Rmu_co8521431.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372180
rosa_rugosa	Rorug04G0242700 Rorug04G0242700
rosa_samantha	Rh4AG299200 Rh4BG305900 Rh4CG321800 Rh4DG303100
rosa_wichuraiana	Rw4G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	262, 370
AccB1I	GGYRCC	1 cut(s)	298
AccII	CGCG	1 cut(s)	155
AclWI	GGATC	2 cut(s)	74, 313
AcyI	GRCGYC	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	63
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	5 cut(s)	23, 94, 134, 265, 293
AluI	AGCT	5 cut(s)	23, 94, 134, 265, 293
Alw21I	GWGCWC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	74, 313
AoxI	GGCC	2 cut(s)	15, 200
ApeKI	GCWGC	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	15, 359
AsuC2I	CCSGG	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	64
BfaI	CTAG	1 cut(s)	350
BfuAI	ACCTGC	2 cut(s)	262, 370
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	15, 359
BmiI	GGNNCC	3 cut(s)	252, 300, 360
BmrFI	CCNGG	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	358, 398
BpuMI	CCSGG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	113, 415
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	17, 202
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	18, 64
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	17, 202
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	4 cut(s)	66, 111, 318, 409
BspANI	GGCC	2 cut(s)	17, 202
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	252, 300, 360
BspMI	ACCTGC	2 cut(s)	262, 370
BspPI	GGATC	2 cut(s)	74, 313
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	4 cut(s)	66, 111, 318, 409
BssNI	GRCGYC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	4, 294, 396
BstF5I	GGATG	1 cut(s)	437
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	4 cut(s)	69, 114, 321, 412
BstMBI	GATC	4 cut(s)	66, 111, 318, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	17, 202
BtsCI	GGATG	1 cut(s)	437
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	2 cut(s)	262, 370
CciI	TCATGA	1 cut(s)	174
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	15, 359
CseI	GACGC	1 cut(s)	207
CviAII	CATG	5 cut(s)	70, 128, 167, 175, 462
DdeI	CTNAG	3 cut(s)	4, 294, 396
DpnI	GATC	4 cut(s)	68, 113, 320, 411
DpnII	GATC	4 cut(s)	66, 111, 318, 409
DraIII	CACNNNGTG	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	390
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	5 cut(s)	73, 131, 170, 178, 465
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	5 cut(s)	69, 127, 166, 174, 461
FauNDI	CATATG	2 cut(s)	312, 425
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	17, 202
HapII	CCGG	2 cut(s)	18, 64
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	5 cut(s)	73, 131, 170, 178, 465
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	3 cut(s)	59, 171, 178
HpaII	CCGG	2 cut(s)	18, 64
Hpy188I	TCNGA	3 cut(s)	48, 223, 273
Hpy188III	TCNNGA	4 cut(s)	175, 182, 211, 232
Hpy99I	CGWCG	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	3 cut(s)	310, 446, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	3 cut(s)	4, 294, 396
HpySE526I	ACGT	1 cut(s)	483
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	5 cut(s)	73, 131, 170, 178, 465
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	4 cut(s)	66, 111, 318, 409
LmnI	GCTCC	3 cut(s)	20, 402, 470
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	4 cut(s)	68, 113, 320, 411
MboI	GATC	4 cut(s)	66, 111, 318, 409
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	3 cut(s)	201, 448, 504
MnlI	CCTC	6 cut(s)	91, 94, 187, 228, 382, 393
MroXI	GAANNNNTTC	1 cut(s)	385
MspI	CCGG	2 cut(s)	18, 64
MspR9I	CCNGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	64
NdeI	CATATG	2 cut(s)	312, 425
NdeII	GATC	4 cut(s)	66, 111, 318, 409
NlaIII	CATG	5 cut(s)	73, 131, 170, 178, 465
NlaIV	GGNNCC	3 cut(s)	252, 300, 360
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	89
PagI	TCATGA	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	171, 178
PfoI	TCCNGGA	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	252, 300, 360
PspPI	GGNCC	2 cut(s)	15, 359
PspPPI	RGGWCCY	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	25
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	4 cut(s)	66, 111, 318, 409
Sau96I	GGNCC	2 cut(s)	15, 359
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	9 cut(s)	25, 96, 136, 256, 267, 295, 355, 364, 486
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	373, 413
SmoI	CTYRAG	2 cut(s)	373, 413
SseBI	AGGCCT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	25
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	30, 89, 210
TfiI	GAWTC	2 cut(s)	171, 178
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	144, 163, 191
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.