Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011737

Physical Location & Seq

Genomic Coordinates Forward (+)

9631190 .. 9634597

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGAGTCTTGCTTTCCTGCCATGAAGCTGAATCAGTGTACCTTTGGTCTCAACAACGAAATTGTCTCTGAGAGAGTTAGTGCGTTCTGGGGAACCCAAGTTGTCAAGCCCAATCATTTGAGGACAACGAAACTTAGGAGTGCACCTCAGAAGAAGATTCAGACAAACCTCATTCGCTCCGTTCTTACTCCATTTGTTGATCAAGAGTCTCATGAACCTCTGTTGAGAACTCAAAATGCAGACCCTAAGAATGTAGCGTCTATCATACTAGGTGGTGGTGCTGGGACTCGCTTGTTCCCTCTTACAAGCAAGAGAGCTAAACCTGCGGTGCCAATTGGAGGGTGTTACAGGCTGATAGATATACCGATGAGCAATTGCATCAACAGTGGTATTAGAAAGATCTTCATCTTAACTCAGTTCAACTCATTTTCTCTCAATCGCCACTTGTCTCGTACTTACAACTTTGGCAATGGAGTCAATTTTGGTGATGGGTTTGTTGAGGTCCTTGCTGCAACCCAAACTTCCGGAGATGCAGGAAAGAAATGGTTTCAGGGAACTGCTGATGCTGTTAGGCAGTTTATATGGGTCTTTGAGGATGCCAAGACAAAGAATGTGGAACATGTCTTGATCTTGTCTGGGGATCATCTCTATCGGATGGATTACATGAACTTTGTGCAGAAGCACATTGAGTCCAATGCTGATATCACAGTTTCTTGTCTTCCCATGGATGAGAGCCGTGCTTCGGACTTTGGGCTGCTTAAAATTGACCAGTCTGGTAAAATCATTCAATTCTCGGAAAAACCAAAGGGAGATGACTTAAAGGCAATGCAAGTTGACACTTCCATTCTTGGTTTACCACCGAAAGAAGCTGCGGAGTCCCCATACATTGCATCGATGGGTGTTTACGTATTTAGAAAAGAGGTTTTGCTAAAGCTTCTAAGGTCAAGTTATCCTACATCCAATGACTTTGGTTCTGAAATTATCCCGTTGGCCGTAGGGGAGCATAATGTTCAGGCATTTTTGTTCAATGACTATTGGGAGGATATTGGAACCATAGGATCATTCTTTGATGCCAATTTAGCCCTCACGGAACAGCCTCCTAAATTCCAATTCTACGATCAAAAAACACCCTTCTTCACTTCTCCAAGATTCTTGCCACCTACCAAAGTTGATAAATGCAGGATACTTGATTCCATAGTTTCACATGGATGCTTCTTGAGAGAATGCAGTGTGCAGCACTCAATCGTTGGCATACGATCACGTCTCGAGTCTGGAGTAGAGCTTCAGGATACAATGATGATGGGAGCTGATTTCTACCAAACGGAAGCTGAGATCGCGTCTCTTTTGGCGGAAGGGAAAGTTCCGGTAGGGGTTGGCCAGAACACAAAAATCAAGAACTGTATCATTGACAAGAACGCCAAGATCGGGAAGAACGTGGTCATAGCGAATGCAGATGGCGTGGAAGAAGGCGATAGACCAGAGGAAGGGTTTCACATAAGATCAGGCATCACCGTTGTGCTGAAGAACGCCACCATTAGAGATGGTCTGCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008878 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009536 GO:0009987 GO:0016051 GO:0016740 GO:0016772 GO:0016779 GO:0019252 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0070566 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

518

Amino Acids

57.47

Weight (kDa)

7.15

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	87 - 364	4.2e-74	Nucleotidyl transferase
LbH_GLGC	PF25247	383 - 515	5.7e-53	GLGC left-handed parallel beta-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27680
fragaria_vesca	FvH4_2g39500 FvH4_2g39500
malus_domestica	MD08G1027900.v1.1 MD15G1023900.v1.1
prunus_persica	Prupe.1G376200_v2.0.a1
pyrus_communis	pycom08g02220 pycom15g02050
rosa_chinensis	RchiOBHm_Chr6g0301451
rosa_laevigata	RLG00000011252
rosa_multiflora	Rmu_sc0014417.1_g000012
rosa_roxburghii	Rroxscaffold_7G00166810
rosa_rugosa	Rorug06G0304800 Rorug06G0304900
rosa_samantha	Rh6AG418500 Rh6BG424700 Rh6CG432000 Rh6DG417900
rosa_wichuraiana	Rw6G036210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	328
AccII	CGCG	1 cut(s)	1337
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	3 cut(s)	326, 872, 1349
AclWI	GGATC	2 cut(s)	648, 1066
AcoI	YGGCCR	2 cut(s)	990, 1375
AcsI	RAATTY	1 cut(s)	1103
AcuI	CTGAAG	2 cut(s)	1268, 1541
AfaI	GTAC	2 cut(s)	40, 454
AfiI	CCNNNNNNNGG	4 cut(s)	338, 742, 1425, 1484
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	3 cut(s)	421, 788, 1027
AjiI	CACGTC	1 cut(s)	1262
AleI	CACNNNNGTG	1 cut(s)	1514
AluBI	AGCT	7 cut(s)	28, 317, 869, 934, 1282, 1307, 1328
AluI	AGCT	7 cut(s)	28, 317, 869, 934, 1282, 1307, 1328
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	6 cut(s)	53, 70, 213, 453, 1268, 1344
Alw44I	GTGCAC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	648, 1066
Ama87I	CYCGRG	1 cut(s)	1265
Aor13HI	TCCGGA	1 cut(s)	524
AoxI	GGCC	2 cut(s)	990, 1375
ApaLI	GTGCAC	1 cut(s)	141
ApeKI	GCWGC	4 cut(s)	509, 754, 869, 1234
ApoI	RAATTY	1 cut(s)	1103
Asp700I	GAANNNNTTC	1 cut(s)	1488
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	497, 1501
AvaI	CYCGRG	1 cut(s)	1265
AvaII	GGWCC	1 cut(s)	502
BaeGI	GKGCMC	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	1377
BanI	GGYRCC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	4 cut(s)	496, 741, 856, 1246
BccI	CCATC	6 cut(s)	482, 649, 889, 1294, 1448, 1535
BceAI	ACGGC	2 cut(s)	720, 977
BciVI	GTATCC	2 cut(s)	1176, 1282
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	6 cut(s)	53, 70, 213, 453, 1268, 1344
BfaI	CTAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	2 cut(s)	1176, 1282
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	4 cut(s)	510, 755, 870, 1235
BlsI	GCNGC	4 cut(s)	511, 756, 871, 1236
Bme18I	GGWCC	1 cut(s)	502
BmeT110I	CYCGRG	1 cut(s)	1265
BmgBI	CACGTC	1 cut(s)	1262
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	3 cut(s)	94, 330, 1051
BmsI	GCATC	8 cut(s)	387, 520, 553, 586, 899, 1060, 1199, 1515
BpiI	GAAGAC	1 cut(s)	710
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
BpmI	CTGGAG	1 cut(s)	1293
BpuEI	CTTGAG	1 cut(s)	1237
Bsa29I	ATCGAT	1 cut(s)	893
BsaAI	YACGTR	1 cut(s)	907
BsaBI	GATNNNNATC	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	723
BsaWI	WCCGGW	2 cut(s)	524, 1363
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 742, 1425, 1484
Bse1I	ACTGG	1 cut(s)	769
Bse3DI	GCAATG	3 cut(s)	475, 831, 885
Bse8I	GATNNNNATC	1 cut(s)	404
BseAI	TCCGGA	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	893
BseDI	CCNNGG	1 cut(s)	723
BseGI	GGATG	5 cut(s)	601, 660, 733, 956, 1214
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	4 cut(s)	338, 742, 1425, 1484
BseMI	GCAATG	3 cut(s)	475, 831, 885
BseMII	CTCAG	4 cut(s)	60, 161, 428, 1320
BseNI	ACTGG	1 cut(s)	769
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	4 cut(s)	496, 741, 856, 1246
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	2 cut(s)	695, 1253
Bsh1236I	CGCG	1 cut(s)	1337
BshFI	GGCC	2 cut(s)	992, 1377
BshNI	GGYRCC	1 cut(s)	328
BshVI	ATCGAT	1 cut(s)	893
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	1265
BsiSI	CCGG	2 cut(s)	525, 1364
BslFI	GGGAC	2 cut(s)	298, 862
BslI	CCNNNNNNNGG	4 cut(s)	338, 742, 1425, 1484
BsmAI	GTCTC	6 cut(s)	53, 70, 213, 453, 1268, 1344
BsmBI	CGTCTC	2 cut(s)	1268, 1344
BsmFI	GGGAC	2 cut(s)	298, 862
BsmI	GAATGC	2 cut(s)	1229, 1453
BsnI	GGCC	2 cut(s)	992, 1377
Bso31I	GGTCTC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	1265
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	524
Bsp19I	CCATGG	1 cut(s)	723
BspACI	CCGC	3 cut(s)	326, 872, 1349
BspANI	GGCC	2 cut(s)	992, 1377
BspCNI	CTCAG	4 cut(s)	61, 160, 427, 1321
BspDI	ATCGAT	1 cut(s)	893
BspEI	TCCGGA	1 cut(s)	524
BspFNI	CGCG	1 cut(s)	1337
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	94, 330, 1051
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	648, 1066
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	3 cut(s)	475, 831, 885
BsrI	ACTGG	1 cut(s)	769
BssECI	CCNNGG	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	723
Bst4CI	ACNGT	4 cut(s)	386, 709, 1400, 1513
BstBAI	YACGTR	1 cut(s)	907
BstDEI	CTNAG	7 cut(s)	69, 134, 147, 246, 414, 938, 1329
BstDSI	CCRYGG	1 cut(s)	723
BstF5I	GGATG	5 cut(s)	601, 660, 733, 956, 1214
BstFNI	CGCG	1 cut(s)	1337
BstMAI	GTCTC	6 cut(s)	53, 70, 213, 453, 1268, 1344
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 1079, 1334
BstNSI	RCATGY	1 cut(s)	623
BstSLI	GKGCMC	1 cut(s)	145
BstSNI	TACGTA	1 cut(s)	907
BstUI	CGCG	1 cut(s)	1337
BstV1I	GCAGC	4 cut(s)	496, 741, 856, 1246
BstV2I	GAAGAC	1 cut(s)	710
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	893
BsuI	GTATCC	2 cut(s)	1176, 1282
BsuRI	GGCC	2 cut(s)	992, 1377
BsuTUI	ATCGAT	1 cut(s)	893
BtgI	CCRYGG	1 cut(s)	723
BtrI	CACGTC	1 cut(s)	1262
BtsCI	GGATG	5 cut(s)	601, 660, 733, 956, 1214
BtsI	GCAGTG	1 cut(s)	1234
BtsIMutI	CAGTG	3 cut(s)	41, 391, 1234
BveI	ACCTGC	1 cut(s)	331
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	502
ClaI	ATCGAT	1 cut(s)	893
CseI	GACGC	2 cut(s)	246, 1326
Csp6I	GTAC	2 cut(s)	39, 453
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	6 cut(s)	22, 212, 620, 664, 724, 1205
CviQI	GTAC	2 cut(s)	39, 453
DdeI	CTNAG	7 cut(s)	69, 134, 147, 246, 414, 938, 1329
EaeI	YGGCCR	2 cut(s)	990, 1375
EciI	GGCGGA	1 cut(s)	1364
Eco105I	TACGTA	1 cut(s)	907
Eco130I	CCWWGG	1 cut(s)	723
Eco31I	GGTCTC	1 cut(s)	53
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	1268, 1541
Eco88I	CYCGRG	1 cut(s)	1265
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	723
Esp3I	CGTCTC	2 cut(s)	1268, 1344
FaeI	CATG	6 cut(s)	25, 215, 623, 667, 727, 1208
FaqI	GGGAC	2 cut(s)	298, 862
FatI	CATG	6 cut(s)	21, 211, 619, 663, 723, 1204
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	510, 755, 870, 1235
FokI	GGATG	5 cut(s)	608, 667, 740, 943, 1221
Fsp4HI	GCNGC	4 cut(s)	510, 755, 870, 1235
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	4 cut(s)	510, 755, 870, 1235
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	1293
HaeIII	GGCC	2 cut(s)	992, 1377
HapII	CCGG	2 cut(s)	525, 1364
HgaI	GACGC	2 cut(s)	246, 1326
Hin1II	CATG	6 cut(s)	25, 215, 623, 667, 727, 1208
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HindIII	AAGCTT	1 cut(s)	932
HpaII	CCGG	2 cut(s)	525, 1364
HphI	GGTGA	2 cut(s)	497, 1501
Hpy166II	GTNNAC	5 cut(s)	39, 143, 835, 854, 904
Hpy188I	TCNGA	7 cut(s)	70, 150, 162, 654, 745, 796, 976
Hpy8I	GTNNAC	5 cut(s)	39, 143, 835, 854, 904
HpyAV	CCTTC	4 cut(s)	1141, 1346, 1460, 1478
HpyCH4III	ACNGT	4 cut(s)	386, 709, 1400, 1513
HpyCH4IV	ACGT	3 cut(s)	906, 1261, 1434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 1079, 1334
HpyF3I	CTNAG	7 cut(s)	69, 134, 147, 246, 414, 938, 1329
HpySE526I	ACGT	3 cut(s)	906, 1261, 1434
Hsp92II	CATG	6 cut(s)	25, 215, 623, 667, 727, 1208
Kpn2I	TCCGGA	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	199
LmnI	GCTCC	3 cut(s)	182, 1000, 1304
Lsp1109I	GCAGC	4 cut(s)	496, 741, 856, 1246
LweI	GCATC	8 cut(s)	387, 520, 553, 586, 899, 1060, 1199, 1515
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	3 cut(s)	906, 1261, 1434
MaeIII	GTNAC	1 cut(s)	344
MboII	GAAGA	8 cut(s)	163, 166, 394, 710, 1126, 1441, 1475, 1534
MfeI	CAATTG	2 cut(s)	333, 373
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	1377
MluNI	TGGCCA	1 cut(s)	1377
MlyI	GAGTC	7 cut(s)	14, 215, 280, 483, 698, 884, 1277
Mox20I	TGGCCA	1 cut(s)	1377
MroI	TCCGGA	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	1488
MscI	TGGCCA	1 cut(s)	1377
MseI	TTAA	4 cut(s)	410, 759, 818, 1555
MslI	CAYNNNNRTG	2 cut(s)	1207, 1514
Msp20I	TGGCCA	1 cut(s)	1377
MspI	CCGG	2 cut(s)	525, 1364
MunI	CAATTG	2 cut(s)	333, 373
Mva1269I	GAATGC	2 cut(s)	1229, 1453
MvnI	CGCG	1 cut(s)	1337
MwoI	GCNNNNNNNGC	3 cut(s)	323, 1079, 1334
NcoI	CCATGG	1 cut(s)	723
NlaIII	CATG	6 cut(s)	25, 215, 623, 667, 727, 1208
NlaIV	GGNNCC	3 cut(s)	94, 330, 1051
NspI	RCATGY	1 cut(s)	623
OliI	CACNNNNGTG	1 cut(s)	1514
PaeR7I	CTCGAG	1 cut(s)	1265
PagI	TCATGA	1 cut(s)	211
PciI	ACATGT	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	1431
PctI	GAATGC	2 cut(s)	1229, 1453
PdmI	GAANNNNTTC	1 cut(s)	1488
PfeI	GAWTC	4 cut(s)	31, 157, 1149, 1190
PkrI	GCNGC	4 cut(s)	511, 756, 871, 1236
PleI	GAGTC	7 cut(s)	13, 214, 280, 482, 697, 883, 1276
PpsI	GAGTC	7 cut(s)	13, 214, 280, 482, 697, 883, 1276
Ppu21I	YACGTR	1 cut(s)	907
PpuMI	RGGWCCY	1 cut(s)	502
PscI	ACATGT	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	94, 330, 1051
PspPI	GGNCC	1 cut(s)	502
PspPPI	RGGWCCY	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	2 cut(s)	40, 454
RsaNI	GTAC	2 cut(s)	39, 453
RseI	CAYNNNNRTG	2 cut(s)	1207, 1514
SaqAI	TTAA	4 cut(s)	410, 759, 818, 1555
SatI	GCNGC	4 cut(s)	510, 755, 870, 1235
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	7 cut(s)	14, 215, 280, 483, 698, 884, 1277
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	8 cut(s)	387, 520, 553, 586, 899, 1060, 1199, 1515
Sfr274I	CTCGAG	1 cut(s)	1265
SinI	GGWCC	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	1265
SmiMI	CAYNNNNRTG	2 cut(s)	1207, 1514
SmlI	CTYRAG	2 cut(s)	1216, 1265
SmoI	CTYRAG	2 cut(s)	1216, 1265
SnaBI	TACGTA	1 cut(s)	907
SsiI	CCGC	3 cut(s)	326, 872, 1349
SspMI	CTAG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	4 cut(s)	386, 709, 1400, 1513
TaiI	ACGT	3 cut(s)	909, 1264, 1437
TaqI	TCGA	2 cut(s)	893, 1266
TfiI	GAWTC	4 cut(s)	31, 157, 1149, 1190
Tru1I	TTAA	4 cut(s)	410, 759, 818, 1555
Tru9I	TTAA	4 cut(s)	410, 759, 818, 1555
TscAI	CASTG	3 cut(s)	41, 391, 1234
TseI	GCWGC	4 cut(s)	509, 754, 869, 1234
TspDTI	ATGAA	4 cut(s)	38, 228, 394, 680
TspGWI	ACGGA	3 cut(s)	169, 1103, 1337
TspRI	CASTG	3 cut(s)	41, 391, 1234
VneI	GTGCAC	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	1103
XceI	RCATGY	1 cut(s)	623
XhoI	CTCGAG	1 cut(s)	1265
XmnI	GAANNNNTTC	1 cut(s)	1488
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.