Rw6G036210

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011737
Physical Location & Seq
Reverse (-)
60725392 .. 60728785
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036210.1

Sequence Viewer

Length: 1581 bp
ATGGATTCTTGCTGTGCGACTCTGAAGGCTAATGCCCTTCGGTTTAAAGTCAGAGAAGGAGGTCTTAGGAACCAAGGTAATGGCTTTTGGGGTGAGAGTATCAGAGGGAGTCTGAAAAGCAGAGATTTGAGTACCCAATTGTTGAAAAGCTTGAAATCTGAAAGAAAGATCAAGCCTGGTGTGGCACACTCTATTCTTACCTCTCCTGATATCAGCCAAGATAATGTGACATTTCAGGCACCATTATTTGAGACTCCAAAAGCTGACCCAAAGAATGTTGCTTCTATCATTTTGGGTGGAGGTGCTGGAACTCGACTATTTCCACTCACCAGCAAAAGAGCCAAGCCAGCGGTTCCAATTGGAGGGTGTTACAGGCTTATTGATATCCCAATGAGTAATTGCATTAATAGTGGCATCAAAAAGATATTCATACTAACACAATTCAACTCTTTCTCACTCAATCGCCACCTTGCTCGTACTTACAATTTTGGAGATGGTATGAATTTCGGAGATGGTTTTGTGGAGGTTTTAGCAGCCACACAAACACCGGGAGAAGCTGGGAAAAAATGGTTTCAAGGAACAGCTGATGCTGTGAGACAATTTATATGGGTGTTTGAGGATGCTAAGAACAAAAATGTTGAGCATATAGTGATATTATCCGGCGATCACCTCTACCGGATGAACTATTTGGATTTTGTGCAGAAACATATCGACACAAATGCCGACATTACAGTATCATGCATACCTATGGATGAGACCCGCGCATCAGATTATGGTCTCATGAAAATTGACCAGTCGGGTCGTATCGTCCACTTTGCCGAGAAACCTAAAGGCATCGATCTAGAAGCAATGCAAGTTGATACCACTGTACTAGGGCTTTCTGAGCTAGATGCTATGACAAATCCTTATATCGCATCAATGGGTGTTTATGTATTTAGAACTGATGTCCTACTAAAGCTATTAAGATTTAGCTACCCTTCTTCTAATGATTTTGGCTCTGAGATTATTCCAGCAGCTGTGAGGGAGCACAATGTCCAGGCATATCTGTTCAATGACTACTGGGAGGATATTGGAACTGTAAAATCTTTTTTTGATGCCAACTTGGCCCTCACAGAACAGCCTCCGAAGTTTGAATTCAATGATCCAAAGACACCTTTCTACACCTCTCCCAGATTCTTGCCACCTACTAAAGTTGAAAAATGCAGGATTATGGATGCAATAATATCACACGGTTGCTTCTTACGAGAATGTAGTGTTCAACACTCCATAGTTGGGGTGCGGTCACGTTTGGAGTACGGTGTTGAACTGAAGGATACTATGATGATGGGTGCAGACTACTACCAAACTGAAGAAGAGATTGCATCTCTGCTAGCTGATGGAAAGGTTCCAGTTGGTGTGGGAGAAAATACCAAAATCTGGAACTGCATAATCGACAAGAATGCGAAGATCGGAAGAAATGTGGTGATCACAAATGCTGATGGAGTTGAAGAAGCAGAGAGGGCAGAGGAAGGGTTTTACATTAGGTCCGGAATCACAGTCGTACTGAAGAACGCAACCATTAATGATGGAACTATTATATAA

Protein Analysis

526

Amino Acids

58.4

Weight (kDa)

6.2

Isoelectric Point (pI)

24.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 95 - 372 5.7e-74 Nucleotidyl transferase
LbH_GLGC PF25247 391 - 525 9.9e-54 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27680
fragaria_vesca FvH4_2g39500 FvH4_2g39500
malus_domestica MD08G1027900.v1.1 MD15G1023900.v1.1
prunus_persica Prupe.1G376200_v2.0.a1
pyrus_communis pycom08g02220 pycom15g02050
rosa_chinensis RchiOBHm_Chr6g0301451
rosa_laevigata RLG00000011252
rosa_multiflora Rmu_sc0014417.1_g000012
rosa_roxburghii Rroxscaffold_7G00166810
rosa_rugosa Rorug06G0304800 Rorug06G0304900
rosa_samantha Rh6AG418500 Rh6BG424700 Rh6CG432000 Rh6DG417900
rosa_wichuraiana Rw6G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 1416
AccII CGCG 1 cut(s) 762
AccIII TCCGGA 1 cut(s) 1526
AciI CCGC 3 cut(s) 350, 760, 1279
AclWI GGATC 1 cut(s) 1136
AcsI RAATTY 2 cut(s) 502, 1133
AcuI CTGAAG 4 cut(s) 44, 1328, 1368, 1565
AfaI GTAC 5 cut(s) 133, 478, 870, 1295, 1542
AfiI CCNNNNNNNGG 3 cut(s) 362, 1272, 1416
AjnI CCWGG 2 cut(s) 175, 1035
AluBI AGCT 9 cut(s) 150, 263, 557, 584, 886, 958, 972, 1016, 1373
AluI AGCT 9 cut(s) 150, 263, 557, 584, 886, 958, 972, 1016, 1373
Alw21I GWGCWC 1 cut(s) 1029
Alw26I GTCTC 4 cut(s) 245, 589, 749, 782
AlwI GGATC 1 cut(s) 1136
AlwNI CAGNNNCTG 1 cut(s) 1016
Aor13HI TCCGGA 1 cut(s) 1526
AoxI GGCC 1 cut(s) 1104
ApeKI GCWGC 2 cut(s) 533, 1013
ApoI RAATTY 2 cut(s) 502, 1133
AseI ATTAAT 2 cut(s) 405, 1560
AspLEI GCGC 1 cut(s) 764
AspS9I GGNCC 2 cut(s) 1105, 1524
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 4 cut(s) 104, 319, 659, 1474
AsuNHI GCTAGC 1 cut(s) 1369
AvaII GGWCC 1 cut(s) 1524
BaeI ACNNNNGTAYC 2 cut(s) 852, 885
BanI GGYRCC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 1029
BbvI GCAGC 2 cut(s) 545, 1025
BccI CCATC 6 cut(s) 488, 506, 1318, 1370, 1472, 1559
BcgI CGANNNNNNTGC 4 cut(s) 701, 735, 1421, 1455
BciT130I CCWGG 2 cut(s) 177, 1037
BciVI GTATCC 1 cut(s) 1306
BclI TGATCA 1 cut(s) 1464
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 4 cut(s) 245, 589, 749, 782
BfaI CTAG 4 cut(s) 842, 872, 887, 1370
BfuI GTATCC 1 cut(s) 1306
BglI GCCNNNNNGGC 1 cut(s) 1103
BisI GCNGC 2 cut(s) 534, 1014
BlsI GCNGC 2 cut(s) 535, 1015
Bme1390I CCNGG 3 cut(s) 177, 549, 1037
Bme18I GGWCC 1 cut(s) 1524
BmgT120I GGNCC 2 cut(s) 1105, 1524
BmiI GGNNCC 4 cut(s) 71, 240, 354, 1386
BmrFI CCNGG 3 cut(s) 177, 549, 1037
BmrI ACTGGG 1 cut(s) 1069
BmtI GCTAGC 1 cut(s) 1373
BmuI ACTGGG 1 cut(s) 1069
BpuMI CCSGG 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 837
BsaI GGTCTC 2 cut(s) 749, 782
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 2 cut(s) 675, 1526
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 1272, 1416
Bse1I ACTGG 3 cut(s) 793, 1064, 1388
Bse3DI GCAATG 1 cut(s) 855
BseAI TCCGGA 1 cut(s) 1526
BseBI CCWGG 2 cut(s) 177, 1037
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 4 cut(s) 625, 684, 757, 1219
BseLI CCNNNNNNNGG 3 cut(s) 362, 1272, 1416
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 2 cut(s) 873, 990
BseNI ACTGG 3 cut(s) 793, 1064, 1388
BseXI GCAGC 2 cut(s) 545, 1025
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 2 cut(s) 719, 1350
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 1 cut(s) 1106
BshNI GGYRCC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 1029
BsiSI CCGG 4 cut(s) 548, 660, 676, 1527
BslI CCNNNNNNNGG 3 cut(s) 362, 1272, 1416
BsmAI GTCTC 4 cut(s) 245, 589, 749, 782
BsmI GAATGC 1 cut(s) 1444
BsnI GGCC 1 cut(s) 1106
Bso31I GGTCTC 2 cut(s) 749, 782
Bsp1286I GDGCHC 1 cut(s) 1029
Bsp13I TCCGGA 1 cut(s) 1526
Bsp143I GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
BspACI CCGC 3 cut(s) 350, 760, 1279
BspANI GGCC 1 cut(s) 1106
BspCNI CTCAG 2 cut(s) 874, 991
BspDI ATCGAT 1 cut(s) 837
BspEI TCCGGA 1 cut(s) 1526
BspFNI CGCG 1 cut(s) 762
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 4 cut(s) 71, 240, 354, 1386
BspOI GCTAGC 1 cut(s) 1373
BspPI GGATC 1 cut(s) 1136
BspT107I GGYRCC 1 cut(s) 238
BspTNI GGTCTC 2 cut(s) 749, 782
BsrDI GCAATG 1 cut(s) 855
BsrI ACTGG 3 cut(s) 793, 1064, 1388
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 177, 1037
Bst4CI ACNGT 6 cut(s) 733, 868, 1078, 1232, 1298, 1537
Bst6I CTCTTC 1 cut(s) 1347
BstC8I GCNNGC 2 cut(s) 348, 1371
BstDEI CTNAG 4 cut(s) 65, 624, 882, 999
BstF5I GGATG 4 cut(s) 625, 684, 757, 1219
BstFNI CGCG 1 cut(s) 762
BstHHI GCGC 1 cut(s) 764
BstKTI GATC 6 cut(s) 171, 667, 841, 1144, 1449, 1467
BstMAI GTCTC 4 cut(s) 245, 589, 749, 782
BstMBI GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
BstMWI GCNNNNNNNGC 4 cut(s) 347, 883, 1103, 1499
BstNI CCWGG 2 cut(s) 177, 1037
BstSCI CCNGG 3 cut(s) 175, 547, 1035
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 2 cut(s) 545, 1025
BstXI CCANNNNNNTGG 1 cut(s) 80
Bsu15I ATCGAT 1 cut(s) 837
BsuI GTATCC 1 cut(s) 1306
BsuRI GGCC 1 cut(s) 1106
BsuTUI ATCGAT 1 cut(s) 837
BtsCI GGATG 4 cut(s) 625, 684, 757, 1219
BtsIMutI CAGTG 1 cut(s) 864
Cac8I GCNNGC 2 cut(s) 348, 1371
CaiI CAGNNNCTG 1 cut(s) 1016
CciI TCATGA 1 cut(s) 780
CfoI GCGC 1 cut(s) 764
Cfr13I GGNCC 2 cut(s) 1105, 1524
ClaI ATCGAT 1 cut(s) 837
Csp6I GTAC 5 cut(s) 132, 477, 869, 1294, 1541
CviAII CATG 2 cut(s) 738, 781
CviQI GTAC 5 cut(s) 132, 477, 869, 1294, 1541
DdeI CTNAG 4 cut(s) 65, 624, 882, 999
DpnI GATC 6 cut(s) 170, 666, 840, 1143, 1448, 1466
DpnII GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
DraI TTTAAA 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 1347
EarI CTCTTC 1 cut(s) 1347
Eco130I CCWWGG 1 cut(s) 73
Eco31I GGTCTC 2 cut(s) 749, 782
Eco32I GATATC 2 cut(s) 211, 385
Eco47I GGWCC 1 cut(s) 1524
Eco57I CTGAAG 4 cut(s) 44, 1328, 1368, 1565
EcoRI GAATTC 1 cut(s) 1133
EcoRII CCWGG 2 cut(s) 175, 1035
EcoRV GATATC 2 cut(s) 211, 385
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 741, 784
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 2 cut(s) 737, 780
FauI CCCGC 1 cut(s) 767
FbaI TGATCA 1 cut(s) 1464
Fnu4HI GCNGC 2 cut(s) 534, 1014
FokI GGATG 4 cut(s) 632, 691, 764, 1226
Fsp4HI GCNGC 2 cut(s) 534, 1014
FspBI CTAG 4 cut(s) 842, 872, 887, 1370
GlaI GCGC 1 cut(s) 763
GluI GCNGC 2 cut(s) 534, 1014
GsaI CCCAGC 1 cut(s) 561
HaeIII GGCC 1 cut(s) 1106
HapII CCGG 4 cut(s) 548, 660, 676, 1527
HhaI GCGC 1 cut(s) 764
Hin1II CATG 2 cut(s) 741, 784
Hin6I GCGC 1 cut(s) 762
HinP1I GCGC 1 cut(s) 762
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 6 cut(s) 5, 19, 109, 253, 1173, 1530
HpaII CCGG 4 cut(s) 548, 660, 676, 1527
HphI GGTGA 4 cut(s) 104, 319, 659, 1474
Hpy166II GTNNAC 1 cut(s) 811
Hpy188III TCNNGA 5 cut(s) 206, 781, 842, 1417, 1527
Hpy8I GTNNAC 1 cut(s) 811
HpyAV CCTTC 6 cut(s) 19, 47, 50, 987, 1303, 1502
HpyCH4III ACNGT 6 cut(s) 733, 868, 1078, 1232, 1298, 1537
HpyCH4IV ACGT 1 cut(s) 1285
HpyCH4V TGCA 9 cut(s) 402, 700, 741, 853, 1203, 1217, 1331, 1361, 1425
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 883, 1103, 1499
HpyF3I CTNAG 4 cut(s) 65, 624, 882, 999
HpySE526I ACGT 1 cut(s) 1285
Hsp92II CATG 2 cut(s) 741, 784
HspAI GCGC 1 cut(s) 762
Kpn2I TCCGGA 1 cut(s) 1526
Ksp22I TGATCA 1 cut(s) 1464
Kzo9I GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
LmnI GCTCC 1 cut(s) 1024
Lsp1109I GCAGC 2 cut(s) 545, 1025
MaeI CTAG 4 cut(s) 842, 872, 887, 1370
MaeII ACGT 1 cut(s) 1285
MaeIII GTNAC 3 cut(s) 226, 368, 1281
MalI GATC 6 cut(s) 170, 666, 840, 1143, 1448, 1466
MboI GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
MboII GAAGA 7 cut(s) 972, 1361, 1364, 1456, 1464, 1499, 1558
MfeI CAATTG 2 cut(s) 137, 357
MhlI GDGCHC 1 cut(s) 1029
MluCI AATT 9 cut(s) 137, 357, 397, 440, 484, 502, 599, 786, 1133
MlyI GAGTC 3 cut(s) 13, 118, 247
Mph1103I ATGCAT 1 cut(s) 743
MroI TCCGGA 1 cut(s) 1526
MseI TTAA 4 cut(s) 45, 405, 962, 1560
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 3 cut(s) 350, 584, 1016
MspI CCGG 4 cut(s) 548, 660, 676, 1527
MspR9I CCNGG 3 cut(s) 177, 549, 1037
MunI CAATTG 2 cut(s) 137, 357
Mva1269I GAATGC 1 cut(s) 1444
MvaI CCWGG 2 cut(s) 177, 1037
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 4 cut(s) 347, 883, 1103, 1499
NciI CCSGG 1 cut(s) 549
NdeII GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
NheI GCTAGC 1 cut(s) 1369
NlaIII CATG 2 cut(s) 741, 784
NlaIV GGNNCC 4 cut(s) 71, 240, 354, 1386
NmeAIII GCCGAG 1 cut(s) 844
NmuCI GTSAC 2 cut(s) 226, 1281
NsiI ATGCAT 1 cut(s) 743
PagI TCATGA 1 cut(s) 780
PctI GAATGC 1 cut(s) 1444
PfeI GAWTC 3 cut(s) 5, 1173, 1530
PflMI CCANNNNNTGG 1 cut(s) 1416
PkrI GCNGC 2 cut(s) 535, 1015
PleI GAGTC 3 cut(s) 13, 117, 247
PpsI GAGTC 3 cut(s) 13, 117, 247
PshBI ATTAAT 2 cut(s) 405, 1560
Psp6I CCWGG 2 cut(s) 175, 1035
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 175, 1035
PspN4I GGNNCC 4 cut(s) 71, 240, 354, 1386
PspPI GGNCC 2 cut(s) 1105, 1524
PstNI CAGNNNCTG 1 cut(s) 1016
PvuII CAGCTG 2 cut(s) 584, 1016
RsaI GTAC 5 cut(s) 133, 478, 870, 1295, 1542
RsaNI GTAC 5 cut(s) 132, 477, 869, 1294, 1541
RseI CAYNNNNRTG 1 cut(s) 746
SaqAI TTAA 4 cut(s) 45, 405, 962, 1560
SatI GCNGC 2 cut(s) 534, 1014
Sau3AI GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
Sau96I GGNCC 2 cut(s) 1105, 1524
SchI GAGTC 3 cut(s) 13, 118, 247
ScrFI CCNGG 3 cut(s) 177, 549, 1037
SduI GDGCHC 1 cut(s) 1029
SinI GGWCC 1 cut(s) 1524
SmiMI CAYNNNNRTG 1 cut(s) 746
Sse9I AATT 9 cut(s) 137, 357, 397, 440, 484, 502, 599, 786, 1133
SsiI CCGC 3 cut(s) 350, 760, 1279
SspMI CTAG 4 cut(s) 842, 872, 887, 1370
StyD4I CCNGG 3 cut(s) 175, 547, 1035
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 6 cut(s) 733, 868, 1078, 1232, 1298, 1537
TaiI ACGT 1 cut(s) 1288
TaqI TCGA 4 cut(s) 313, 711, 837, 1431
TasI AATT 9 cut(s) 137, 357, 397, 440, 484, 502, 599, 786, 1133
TatI WGTACW 1 cut(s) 868
TfiI GAWTC 3 cut(s) 5, 1173, 1530
Tru1I TTAA 4 cut(s) 45, 405, 962, 1560
Tru9I TTAA 4 cut(s) 45, 405, 962, 1560
TscAI CASTG 1 cut(s) 871
TseFI GTSAC 2 cut(s) 226, 1281
TseI GCWGC 2 cut(s) 533, 1013
Tsp45I GTSAC 2 cut(s) 226, 1281
TspDTI ATGAA 4 cut(s) 418, 515, 695, 797
TspRI CASTG 1 cut(s) 871
Van91I CCANNNNNTGG 1 cut(s) 1416
VpaK11BI GGWCC 1 cut(s) 1524
VspI ATTAAT 2 cut(s) 405, 1560
XapI RAATTY 2 cut(s) 502, 1133
XbaI TCTAGA 1 cut(s) 841
XspI CTAG 4 cut(s) 842, 872, 887, 1370
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.