Rorug06G0304800

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011737
Physical Location & Seq
Forward (+)
45585024 .. 45585596
573 bp
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UTR
Exon/CDS
Intron
Rorug06G0304800.1

Sequence Viewer

Length: 573 bp
ATGTCTTGCTTGAGGCTGAGGCTTCCACCAGCCAGAAAGGCTTGGAAGAGCTTCACTTCCAAACTACACAGCAAGCTCCACAAACGCAAAGCCATCAACAAATCCAGAAATCGAGTCAAGCCCTCCACTACAATCTCTATTCGAGTTCGACCCTACAAGTTTCTTCAGCTACGCTTGCAGCGCAAACCACGCTTTTTGCTGCGCTTTCGCCAGAATTGTCGTAGCCTGCTTCAAAACAGGCATGCACATGTTTATGTGGACAGGCTCTTTAAAGAGCCTGCTGTCTCCGAGCTAGTTGCTGAGCGTTGTCAACAGCAGAAAACTCCACTAGCAAAGTGTGTGATCAAGACTACTGAGGATCGCTCTGTACCAGAAGCAGGCAAGCAATCTCAATCTGCAGTTGGTGAGAATAGCGAGTCTGAAGGAGTAACCAGTGCTGCAGATGATATGTGGGAGTCACTGGGATTTGGCTCCCCCCAGATGGATGGAATTGATGAAAGAGCCGAGGAGTTTATAGCTCGGTTCAGGGCAGAAATGAAGGATCAGGAGACGTTGGCCCGTCGCCATTTGTAG

Protein Analysis

190

Amino Acids

22.03

Weight (kDa)

10.37

Isoelectric Point (pI)

62.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 162 - 180 5.7e-06 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27680
fragaria_vesca FvH4_2g39500 FvH4_2g39500
malus_domestica MD08G1027900.v1.1 MD15G1023900.v1.1
prunus_persica Prupe.1G376200_v2.0.a1
pyrus_communis pycom08g02220 pycom15g02050
rosa_chinensis RchiOBHm_Chr6g0301451
rosa_laevigata RLG00000011252
rosa_multiflora Rmu_sc0014417.1_g000012
rosa_roxburghii Rroxscaffold_7G00166810
rosa_rugosa Rorug06G0304800 Rorug06G0304900
rosa_samantha Rh6AG418500 Rh6BG424700 Rh6CG432000 Rh6DG417900
rosa_wichuraiana Rw6G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 366, 549
AcuI CTGAAG 2 cut(s) 149, 441
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 377, 481
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 5 cut(s) 51, 76, 169, 292, 518
AluI AGCT 5 cut(s) 51, 76, 169, 292, 518
Alw26I GTCTC 2 cut(s) 289, 542
AlwI GGATC 2 cut(s) 366, 549
AoxI GGCC 1 cut(s) 555
ApeKI GCWGC 3 cut(s) 178, 199, 437
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 183, 204
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 1 cut(s) 416
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 186, 190, 424
BccI CCATC 3 cut(s) 101, 475, 479
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 289, 542
BfaI CTAG 2 cut(s) 293, 329
BfmI CTRYAG 2 cut(s) 396, 438
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 3 cut(s) 179, 200, 438
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 3 cut(s) 180, 201, 439
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 1 cut(s) 472
BmrI ACTGGG 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 504
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 481
Bse1I ACTGG 2 cut(s) 432, 465
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 377, 481
BseMII CTCAG 3 cut(s) 8, 291, 345
BseNI ACTGG 2 cut(s) 432, 465
BseRI GAGGAG 1 cut(s) 521
BseXI GCAGC 3 cut(s) 186, 190, 424
BshFI GGCC 1 cut(s) 557
BslI CCNNNNNNNGG 2 cut(s) 377, 481
BsmAI GTCTC 2 cut(s) 289, 542
BsmBI CGTCTC 1 cut(s) 542
BsnI GGCC 1 cut(s) 557
Bsp143I GATC 3 cut(s) 342, 358, 541
Bsp1720I GCTNAGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 557
BspCNI CTCAG 3 cut(s) 9, 292, 346
BspLI GGNNCC 1 cut(s) 472
BspMAI CTGCAG 2 cut(s) 400, 442
BspPI GGATC 2 cut(s) 366, 549
BspQI GCTCTTC 1 cut(s) 41
BsrI ACTGG 2 cut(s) 432, 465
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 3 cut(s) 342, 358, 541
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 7 cut(s) 74, 176, 227, 243, 279, 379, 383
BstDEI CTNAG 3 cut(s) 17, 300, 354
BstF5I GGATG 1 cut(s) 490
BstHHI GCGC 2 cut(s) 183, 204
BstKTI GATC 3 cut(s) 345, 361, 544
BstMAI GTCTC 2 cut(s) 289, 542
BstMBI GATC 3 cut(s) 342, 358, 541
BstMWI GCNNNNNNNGC 4 cut(s) 38, 175, 180, 189
BstNSI RCATGY 2 cut(s) 245, 251
BstSFI CTRYAG 2 cut(s) 396, 438
BstV1I GCAGC 3 cut(s) 186, 190, 424
BstXI CCANNNNNNTGG 1 cut(s) 485
BsuRI GGCC 1 cut(s) 557
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 439, 458
Cac8I GCNNGC 7 cut(s) 74, 176, 227, 243, 279, 379, 383
CfoI GCGC 2 cut(s) 183, 204
Cfr13I GGNCC 1 cut(s) 556
Csp6I GTAC 1 cut(s) 368
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CviAII CATG 2 cut(s) 242, 248
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 3 cut(s) 17, 300, 354
DpnI GATC 3 cut(s) 344, 360, 543
DpnII GATC 3 cut(s) 342, 358, 541
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco57I CTGAAG 2 cut(s) 149, 441
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 2 cut(s) 245, 251
FaiI YATR 5 cut(s) 243, 249, 255, 449, 515
FatI CATG 2 cut(s) 241, 247
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 179, 200, 438
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 3 cut(s) 179, 200, 438
FspBI CTAG 2 cut(s) 293, 329
GlaI GCGC 2 cut(s) 182, 203
GluI GCNGC 3 cut(s) 179, 200, 438
HaeIII GGCC 1 cut(s) 557
HhaI GCGC 2 cut(s) 183, 204
Hin1II CATG 2 cut(s) 245, 251
Hin6I GCGC 2 cut(s) 181, 202
HinP1I GCGC 2 cut(s) 181, 202
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HinfI GANTC 3 cut(s) 114, 416, 455
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 259, 311
Hpy188I TCNGA 2 cut(s) 289, 421
Hpy188III TCNNGA 3 cut(s) 105, 346, 545
Hpy8I GTNNAC 2 cut(s) 259, 311
Hpy99I CGWCG 1 cut(s) 564
HpyAV CCTTC 2 cut(s) 416, 532
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 4 cut(s) 178, 245, 398, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 175, 180, 189
HpyF3I CTNAG 3 cut(s) 17, 300, 354
HpySE526I ACGT 1 cut(s) 551
Hsp92II CATG 2 cut(s) 245, 251
HspAI GCGC 2 cut(s) 181, 202
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 3 cut(s) 342, 358, 541
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 2 cut(s) 81, 476
Lsp1109I GCAGC 3 cut(s) 186, 190, 424
MaeI CTAG 2 cut(s) 293, 329
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 2 cut(s) 427, 456
MalI GATC 3 cut(s) 344, 360, 543
MboI GATC 3 cut(s) 342, 358, 541
MboII GAAGA 2 cut(s) 58, 155
MluCI AATT 2 cut(s) 214, 489
MlyI GAGTC 3 cut(s) 123, 425, 464
MnlI CCTC 5 cut(s) 6, 12, 133, 349, 499
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 246, 252
MwoI GCNNNNNNNGC 4 cut(s) 38, 175, 180, 189
NdeII GATC 3 cut(s) 342, 358, 541
NlaIII CATG 2 cut(s) 245, 251
NlaIV GGNNCC 1 cut(s) 472
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 456
NspI RCATGY 2 cut(s) 245, 251
PaeI GCATGC 1 cut(s) 245
PciI ACATGT 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 180, 201, 439
PleI GAGTC 3 cut(s) 122, 424, 463
PpsI GAGTC 3 cut(s) 122, 424, 463
PscI ACATGT 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 556
PstI CTGCAG 2 cut(s) 400, 442
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 2 cut(s) 246, 252
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 3 cut(s) 179, 200, 438
Sau3AI GATC 3 cut(s) 342, 358, 541
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 3 cut(s) 123, 425, 464
SetI ASST 6 cut(s) 53, 78, 171, 294, 520, 554
SfcI CTRYAG 2 cut(s) 396, 438
SmiMI CAYNNNNRTG 2 cut(s) 246, 252
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SphI GCATGC 1 cut(s) 245
Sse9I AATT 2 cut(s) 214, 489
SspMI CTAG 2 cut(s) 293, 329
TaiI ACGT 1 cut(s) 554
TaqI TCGA 3 cut(s) 112, 142, 148
TasI AATT 2 cut(s) 214, 489
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 2 cut(s) 439, 465
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 3 cut(s) 178, 199, 437
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 2 cut(s) 510, 551
TspRI CASTG 2 cut(s) 439, 465
XceI RCATGY 2 cut(s) 245, 251
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 2 cut(s) 293, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.