Rh6CG432000

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011737
Physical Location & Seq
Reverse (-)
61233108 .. 61237381
4274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG432000.1

Sequence Viewer

Length: 1137 bp
ATGGATTCTTGCTGTGCGACTCTGAAGGTTAATGCCCTACCGGTTAAAGTCAGAGAAGGAGGTCTTAGGAACCAAGGTAATGGCTTTTGGGGTGAGAGTATCAGAGGGAGTCTGAAAAGCAGAGATTTGAGTACCCAATTGTTGAAAAGCTTGAAATCTGAAAGAAAGATCAAGCCTGGTGTGGCACACTCTATTCTTACCTCTCCTGATATCAGCCAAGATAATGTGACATTTCAGGCACCATTATTTGAGACTCCAAAAGCTGACCCAAAGAATGTTGCTTCTATCATTTTGGGTGGAGGTGCTGGAACTCGACTATTTCCACTCACCAGCAAAAGAGCCAAGCCAGCGGTTCCAATTGGAGGGTGTTACAGGCTTATTGATATCCCAATGAGTAATTGCATTAATAGTGGCATCAAAAAGATATTCATACTAACACAATTCAACTCTTTCTCACTCAATCGCCACCTTGCTCGTACTTACAATTTTGGAGATGGTATGAATTTCGGAGATGGTTTTGTGGAGGTTTTAGCAGCCACACAAACACCGGGAGAAGCTGGGAAAAAATGGTTTCAAGGAACAGCTGATGCTGTGAGACAATTTATATGGGTGTTTGAGGATGCTAAGAACAAAAATGTTGAGCATATAGTGATATTATCCGGCGATCACCTCTACCGGATGAACTATTTGGATTTTGTGCAGAAACATATTGACACAAATGCCGACATTACGGTATCATGCATACCTATGGATGAGACCCGCGCATCAGATTATGGTCTCATGAAAATTGACCAGTCGGGTCGTATCGTCCACTTTGCCGAGAAACCTAAAGGCATCGATCTAGAAGCAATGCAAGTTGATACCACTGTACTAGGGCTTTCTGAGCTAGATGCTATGACAAATCCTTATATCGCATCAATGGGTGTTTATGTATTTAGAACTGATGTCCTACTAAAGCTATTAAGATTTAGCTACCCTTCTTCCAATGATTTTGGCTCTGAGATTATTCCAGCAGCTGTGAGGGAGCACAATGTCCAGGCATATCTGTTCAATGACTACTGGGAGGATATTGGAACTGTAAAATCTTTTTTTGATGCCAACTTGGCCCTCACAGAACAGGTTAGTAATGAACACTAG

Protein Analysis

378

Amino Acids

41.86

Weight (kDa)

6.46

Isoelectric Point (pI)

20.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 95 - 372 2.2e-74 Nucleotidyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27680
fragaria_vesca FvH4_2g39500 FvH4_2g39500
malus_domestica MD08G1027900.v1.1 MD15G1023900.v1.1
prunus_persica Prupe.1G376200_v2.0.a1
pyrus_communis pycom08g02220 pycom15g02050
rosa_chinensis RchiOBHm_Chr6g0301451
rosa_laevigata RLG00000011252
rosa_multiflora Rmu_sc0014417.1_g000012
rosa_roxburghii Rroxscaffold_7G00166810
rosa_rugosa Rorug06G0304800 Rorug06G0304900
rosa_samantha Rh6AG418500 Rh6BG424700 Rh6CG432000 Rh6DG417900
rosa_wichuraiana Rw6G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccII CGCG 1 cut(s) 762
AciI CCGC 2 cut(s) 350, 760
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 3 cut(s) 133, 478, 870
AfiI CCNNNNNNNGG 1 cut(s) 362
AgeI ACCGGT 1 cut(s) 40
AgsI TTSAA 5 cut(s) 145, 154, 445, 575, 1051
AjnI CCWGG 2 cut(s) 175, 1035
AluBI AGCT 8 cut(s) 150, 263, 557, 584, 886, 958, 972, 1016
AluI AGCT 8 cut(s) 150, 263, 557, 584, 886, 958, 972, 1016
Alw21I GWGCWC 1 cut(s) 1029
Alw26I GTCTC 4 cut(s) 245, 589, 749, 782
AlwNI CAGNNNCTG 1 cut(s) 1016
AoxI GGCC 1 cut(s) 1104
ApeKI GCWGC 2 cut(s) 533, 1013
ApoI RAATTY 1 cut(s) 502
AseI ATTAAT 1 cut(s) 405
AsiGI ACCGGT 1 cut(s) 40
AspLEI GCGC 1 cut(s) 764
AspS9I GGNCC 1 cut(s) 1105
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 3 cut(s) 104, 319, 659
BaeI ACNNNNGTAYC 2 cut(s) 852, 885
BanI GGYRCC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 1029
BbvI GCAGC 2 cut(s) 545, 1025
BccI CCATC 2 cut(s) 488, 506
BciT130I CCWGG 2 cut(s) 177, 1037
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 4 cut(s) 245, 589, 749, 782
BfaI CTAG 4 cut(s) 842, 872, 887, 1135
BglI GCCNNNNNGGC 1 cut(s) 1103
BisI GCNGC 2 cut(s) 534, 1014
BlsI GCNGC 2 cut(s) 535, 1015
Bme1390I CCNGG 3 cut(s) 177, 549, 1037
BmgT120I GGNCC 1 cut(s) 1105
BmiI GGNNCC 3 cut(s) 71, 240, 354
BmrFI CCNGG 3 cut(s) 177, 549, 1037
BmrI ACTGGG 1 cut(s) 1069
BmsI GCATC 8 cut(s) 423, 577, 610, 773, 843, 880, 923, 1084
BmuI ACTGGG 1 cut(s) 1069
BpuMI CCSGG 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 837
BsaI GGTCTC 2 cut(s) 749, 782
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 2 cut(s) 40, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 793, 1064
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 2 cut(s) 177, 1037
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 3 cut(s) 625, 684, 757
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 2 cut(s) 873, 990
BseNI ACTGG 2 cut(s) 793, 1064
BseXI GCAGC 2 cut(s) 545, 1025
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 1 cut(s) 719
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 1 cut(s) 1106
BshNI GGYRCC 1 cut(s) 238
BshTI ACCGGT 1 cut(s) 40
BshVI ATCGAT 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 1029
BsiSI CCGG 4 cut(s) 41, 548, 660, 676
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 4 cut(s) 245, 589, 749, 782
BsnI GGCC 1 cut(s) 1106
Bso31I GGTCTC 2 cut(s) 749, 782
Bsp1286I GDGCHC 1 cut(s) 1029
Bsp143I GATC 3 cut(s) 168, 664, 838
BspACI CCGC 2 cut(s) 350, 760
BspANI GGCC 1 cut(s) 1106
BspCNI CTCAG 2 cut(s) 874, 991
BspDI ATCGAT 1 cut(s) 837
BspFNI CGCG 1 cut(s) 762
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 3 cut(s) 71, 240, 354
BspT107I GGYRCC 1 cut(s) 238
BspTNI GGTCTC 2 cut(s) 749, 782
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 2 cut(s) 793, 1064
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 3 cut(s) 168, 664, 838
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 177, 1037
Bst4CI ACNGT 3 cut(s) 733, 868, 1078
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 4 cut(s) 65, 624, 882, 999
BstF5I GGATG 3 cut(s) 625, 684, 757
BstFNI CGCG 1 cut(s) 762
BstHHI GCGC 1 cut(s) 764
BstKTI GATC 3 cut(s) 171, 667, 841
BstMAI GTCTC 4 cut(s) 245, 589, 749, 782
BstMBI GATC 3 cut(s) 168, 664, 838
BstMWI GCNNNNNNNGC 3 cut(s) 347, 883, 1103
BstNI CCWGG 2 cut(s) 177, 1037
BstSCI CCNGG 3 cut(s) 175, 547, 1035
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 2 cut(s) 545, 1025
BstXI CCANNNNNNTGG 1 cut(s) 80
Bsu15I ATCGAT 1 cut(s) 837
BsuRI GGCC 1 cut(s) 1106
BsuTUI ATCGAT 1 cut(s) 837
BtsCI GGATG 3 cut(s) 625, 684, 757
BtsIMutI CAGTG 1 cut(s) 864
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 1016
CciI TCATGA 1 cut(s) 780
CfoI GCGC 1 cut(s) 764
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 1105
ClaI ATCGAT 1 cut(s) 837
Csp6I GTAC 3 cut(s) 132, 477, 869
CspAI ACCGGT 1 cut(s) 40
CviAII CATG 2 cut(s) 738, 781
CviQI GTAC 3 cut(s) 132, 477, 869
DdeI CTNAG 4 cut(s) 65, 624, 882, 999
DpnI GATC 3 cut(s) 170, 666, 840
DpnII GATC 3 cut(s) 168, 664, 838
Eco130I CCWWGG 1 cut(s) 73
Eco31I GGTCTC 2 cut(s) 749, 782
Eco32I GATATC 2 cut(s) 211, 385
Eco57I CTGAAG 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 175, 1035
EcoRV GATATC 2 cut(s) 211, 385
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 741, 784
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 2 cut(s) 737, 780
FauI CCCGC 1 cut(s) 767
Fnu4HI GCNGC 2 cut(s) 534, 1014
FokI GGATG 3 cut(s) 632, 691, 764
Fsp4HI GCNGC 2 cut(s) 534, 1014
FspBI CTAG 4 cut(s) 842, 872, 887, 1135
GlaI GCGC 1 cut(s) 763
GluI GCNGC 2 cut(s) 534, 1014
GsaI CCCAGC 1 cut(s) 561
HaeIII GGCC 1 cut(s) 1106
HapII CCGG 4 cut(s) 41, 548, 660, 676
HhaI GCGC 1 cut(s) 764
Hin1II CATG 2 cut(s) 741, 784
Hin6I GCGC 1 cut(s) 762
HinP1I GCGC 1 cut(s) 762
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 4 cut(s) 5, 19, 109, 253
HpaII CCGG 4 cut(s) 41, 548, 660, 676
HphI GGTGA 3 cut(s) 104, 319, 659
Hpy166II GTNNAC 1 cut(s) 811
Hpy188I TCNGA 9 cut(s) 24, 53, 104, 114, 160, 509, 769, 883, 1000
Hpy188III TCNNGA 3 cut(s) 206, 781, 842
Hpy8I GTNNAC 1 cut(s) 811
HpyAV CCTTC 3 cut(s) 19, 50, 987
HpyCH4III ACNGT 3 cut(s) 733, 868, 1078
HpyCH4V TGCA 4 cut(s) 402, 700, 741, 853
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 883, 1103
HpyF3I CTNAG 4 cut(s) 65, 624, 882, 999
Hsp92II CATG 2 cut(s) 741, 784
HspAI GCGC 1 cut(s) 762
Kzo9I GATC 3 cut(s) 168, 664, 838
LmnI GCTCC 1 cut(s) 1024
Lsp1109I GCAGC 2 cut(s) 545, 1025
LweI GCATC 8 cut(s) 423, 577, 610, 773, 843, 880, 923, 1084
MaeI CTAG 4 cut(s) 842, 872, 887, 1135
MaeIII GTNAC 2 cut(s) 226, 368
MalI GATC 3 cut(s) 170, 666, 840
MboI GATC 3 cut(s) 168, 664, 838
MboII GAAGA 1 cut(s) 972
MfeI CAATTG 2 cut(s) 137, 357
MhlI GDGCHC 1 cut(s) 1029
MluCI AATT 8 cut(s) 137, 357, 397, 440, 484, 502, 599, 786
MlyI GAGTC 3 cut(s) 13, 118, 247
Mph1103I ATGCAT 1 cut(s) 743
MseI TTAA 4 cut(s) 30, 45, 405, 962
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 3 cut(s) 350, 584, 1016
MspI CCGG 4 cut(s) 41, 548, 660, 676
MspR9I CCNGG 3 cut(s) 177, 549, 1037
MunI CAATTG 2 cut(s) 137, 357
MvaI CCWGG 2 cut(s) 177, 1037
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 3 cut(s) 347, 883, 1103
NciI CCSGG 1 cut(s) 549
NdeII GATC 3 cut(s) 168, 664, 838
NlaIII CATG 2 cut(s) 741, 784
NlaIV GGNNCC 3 cut(s) 71, 240, 354
NmeAIII GCCGAG 1 cut(s) 844
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 743
PagI TCATGA 1 cut(s) 780
PfeI GAWTC 1 cut(s) 5
PinAI ACCGGT 1 cut(s) 40
PkrI GCNGC 2 cut(s) 535, 1015
PleI GAGTC 3 cut(s) 13, 117, 247
PpsI GAGTC 3 cut(s) 13, 117, 247
PshBI ATTAAT 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 175, 1035
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 175, 1035
PspN4I GGNNCC 3 cut(s) 71, 240, 354
PspPI GGNCC 1 cut(s) 1105
PstNI CAGNNNCTG 1 cut(s) 1016
PvuII CAGCTG 2 cut(s) 584, 1016
RsaI GTAC 3 cut(s) 133, 478, 870
RsaNI GTAC 3 cut(s) 132, 477, 869
RseI CAYNNNNRTG 1 cut(s) 746
SaqAI TTAA 4 cut(s) 30, 45, 405, 962
SatI GCNGC 2 cut(s) 534, 1014
Sau3AI GATC 3 cut(s) 168, 664, 838
Sau96I GGNCC 1 cut(s) 1105
SchI GAGTC 3 cut(s) 13, 118, 247
ScrFI CCNGG 3 cut(s) 177, 549, 1037
SduI GDGCHC 1 cut(s) 1029
SfaNI GCATC 8 cut(s) 423, 577, 610, 773, 843, 880, 923, 1084
SmiMI CAYNNNNRTG 1 cut(s) 746
Sse9I AATT 8 cut(s) 137, 357, 397, 440, 484, 502, 599, 786
SsiI CCGC 2 cut(s) 350, 760
SspMI CTAG 4 cut(s) 842, 872, 887, 1135
StyD4I CCNGG 3 cut(s) 175, 547, 1035
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 3 cut(s) 733, 868, 1078
TaqI TCGA 2 cut(s) 313, 837
TasI AATT 8 cut(s) 137, 357, 397, 440, 484, 502, 599, 786
TatI WGTACW 1 cut(s) 868
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 4 cut(s) 30, 45, 405, 962
Tru9I TTAA 4 cut(s) 30, 45, 405, 962
TscAI CASTG 1 cut(s) 871
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 2 cut(s) 533, 1013
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 4 cut(s) 418, 515, 695, 797
TspRI CASTG 1 cut(s) 871
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 1 cut(s) 502
XbaI TCTAGA 1 cut(s) 841
XspI CTAG 4 cut(s) 842, 872, 887, 1135
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.