MD08G1027900.v1.1

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
2037579 .. 2041241
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1027900.v1.1.491

Sequence Viewer

Length: 1539 bp
ATGGATTCCTGCTGTGCGACATTGAGGCCCAATGGGTTCTTGGGGGAGAGTGTGAGGTTGGGTTCAAAGAGCAGAGATTTGAGTGCCGTGTTTCTCAAAAGCTCTAAATTTGAAAGCAGAGGTAGGAAGCTTAAGCCTCCTGGTGTGGCTTACTCCATGTTTACCGATGTCAACAAAGAGACTGTGACGTTTCAGGCACCACTGTTTGAGACTCAAAAGGCTGACCCCAAAAATGTGGCTTCTATAATTTTGGGTGGAGGTGCCGGAACTCGCCTCTTTCCTCTCACCAGCAAGAGAGCCAAGCCGGCGGTTCCGATTGGAGGGTGTTACAGGCTGATTGATATCCCAATGAGCAATTGCATTAACAGTGGCATTAAAAAGATATTCATATTAACGCAATATAACTCGTTTTCCCTCAATCGTCACCTTGCTCGTACTTATAATTTCGGGGATGGTATGAATTTCGGAGATGGATTTGTGGAGGTTTTGGCTGCCACTCAAACACCAGGAGACGCTGGGAAGAGATGGTTCCAAGGAACAGCTGATGCTGTCAGGCAATTTATATGGGTCTTCGAGGATGCAAAGAACAAAAATGTTGAGCATATACTGATATTATCCGGCGATCATCTATACAGGATGGACTATCTGGACTTTATACAGAAACATATTGATACAAATGCCGACATTACAGTTTCATGTATACCCATGGATGAAAGCCGGGCATCAGATTACGGACTCATGAAAATAGACCAGTCAGGGCGTATAATCCAATTTGCTGAAAAACCAAAAGGCGCTGACCTAGAAGCAATGCAAGTTGACACCACTGTTCTGGGGCTTTCTGATCTGGAGGCTATGAATTCTCCTTATATTGCATCGATGGGTGTTTATGTGTTCAGAACTGATGTCCTACTAAAGCTATTAAGGTGGAGCTATCCTTCTTGCAATGATTTTGGCTCCGAGATTATTCCATCAGCTGTGAGGGAGCACAACGTCCAGGCATACCTATTCAATGACTACTGGGAGGATATTGGAACTGTAAAGTCTTTCTTTGATGCAAACTTGGCCCTCACAGAACAGCCTCCGAAGTTTGAATTCAATGATCCAAAGACACCCTTTTACACCTCTCCTAGATTCTTGCCACCTACAAAAGTTGAAGAATGCAGGATTATGGATGCAATTATTTCTCATGGTTGCTTCTTGCGAGAGTGTAGCGTTCAACATTCCATTGTAGGTGTACGCTCGCGTCTAGAGTCCGGTGTAGAACTTAAGGATACTATGATGATGGGTGCAGACTACTACCAAACGGAATCTGAGATTGCATCTCTGCTAGCTCAAGGAAAGGTTCCAGTTGGTGTCGGAGAAAATACCAAAATCTGGAATTGCATAATCGACAAGAACGCCAAGATAGGAAGAAATGTGGTGATCACAAATGGCGATGGAGTTGAAGAAGCAGAGAGGGCGGACGAAGGATTTTACATAAGGTCAGGGATCACAGTCGTATTGAAGAATGCAACGATTAAAGATGGAACTGTCATCTAA

Protein Analysis

513

Amino Acids

56.85

Weight (kDa)

5.92

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 81 - 358 8.4e-76 Nucleotidyl transferase
LbH_GLGC PF25247 377 - 511 3.5e-54 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011737)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 196, 260
AccB7I CCANNNNNTGG 1 cut(s) 1374
AccI GTMKAC 1 cut(s) 700
AccII CGCG 1 cut(s) 1243
AciI CCGC 2 cut(s) 308, 1460
AclWI GGATC 2 cut(s) 1094, 1496
AcsI RAATTY 4 cut(s) 107, 460, 856, 1091
AfaI GTAC 2 cut(s) 436, 1236
AfiI CCNNNNNNNGG 2 cut(s) 320, 1374
AflII CTTAAG 2 cut(s) 131, 1265
AgsI TTSAA 9 cut(s) 66, 113, 1009, 1091, 1096, 1154, 1217, 1445, 1504
AjnI CCWGG 3 cut(s) 139, 505, 993
AluBI AGCT 7 cut(s) 102, 130, 542, 916, 930, 974, 1331
AluI AGCT 7 cut(s) 102, 130, 542, 916, 930, 974, 1331
Alw21I GWGCWC 1 cut(s) 987
Alw26I GTCTC 3 cut(s) 173, 203, 504
AlwI GGATC 2 cut(s) 1094, 1496
AoxI GGCC 2 cut(s) 26, 1062
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 4 cut(s) 107, 460, 856, 1091
AspLEI GCGC 1 cut(s) 794
AspS9I GGNCC 2 cut(s) 27, 1063
AsuC2I CCSGG 1 cut(s) 719
AsuHPI GGTGA 3 cut(s) 277, 416, 1432
AsuNHI GCTAGC 1 cut(s) 1327
BanI GGYRCC 2 cut(s) 196, 260
BbsI GAAGAC 1 cut(s) 562
Bbv12I GWGCWC 1 cut(s) 987
BbvI GCAGC 1 cut(s) 478
BccI CCATC 9 cut(s) 446, 464, 519, 631, 871, 976, 1276, 1430, 1517
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 3 cut(s) 141, 507, 995
BciVI GTATCC 1 cut(s) 1264
BclI TGATCA 1 cut(s) 1422
BcnI CCSGG 1 cut(s) 719
BcoDI GTCTC 3 cut(s) 173, 203, 504
BfaI CTAG 4 cut(s) 800, 1128, 1247, 1328
BfoI RGCGCY 1 cut(s) 795
BfrI CTTAAG 2 cut(s) 131, 1265
BfuI GTATCC 1 cut(s) 1264
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
Bme1390I CCNGG 4 cut(s) 141, 507, 719, 995
BmgT120I GGNCC 2 cut(s) 27, 1063
BmiI GGNNCC 6 cut(s) 198, 262, 312, 530, 955, 1344
BmrFI CCNGG 4 cut(s) 141, 507, 719, 995
BmrI ACTGGG 1 cut(s) 1027
BmsI GCATC 7 cut(s) 535, 568, 731, 881, 1042, 1162, 1328
BmtI GCTAGC 1 cut(s) 1331
BmuI ACTGGG 1 cut(s) 1027
BpiI GAAGAC 1 cut(s) 562
BpmI CTGGAG 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 1317
BpuMI CCSGG 1 cut(s) 719
Bsa29I ATCGAT 1 cut(s) 875
BsaBI GATNNNNATC 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 532, 705
BsaWI WCCGGW 1 cut(s) 1253
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 1374
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 3 cut(s) 751, 1022, 1346
Bse3DI GCAATG 2 cut(s) 813, 949
Bse8I GATNNNNATC 1 cut(s) 341
BseBI CCWGG 3 cut(s) 141, 507, 995
BseCI ATCGAT 1 cut(s) 875
BseDI CCNNGG 2 cut(s) 532, 705
BseGI GGATG 5 cut(s) 457, 583, 642, 715, 1177
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 2 cut(s) 320, 1374
BseMI GCAATG 2 cut(s) 813, 949
BseMII CTCAG 1 cut(s) 1302
BseNI ACTGG 3 cut(s) 751, 1022, 1346
BseXI GCAGC 1 cut(s) 478
BseYI CCCAGC 1 cut(s) 515
BsgI GTGCAG 1 cut(s) 1308
Bsh1236I CGCG 1 cut(s) 1243
BshFI GGCC 2 cut(s) 28, 1064
BshNI GGYRCC 2 cut(s) 196, 260
BshVI ATCGAT 1 cut(s) 875
BsiHKAI GWGCWC 1 cut(s) 987
BsiSI CCGG 5 cut(s) 264, 305, 618, 718, 1254
BslI CCNNNNNNNGG 2 cut(s) 320, 1374
BsmAI GTCTC 3 cut(s) 173, 203, 504
BsmBI CGTCTC 1 cut(s) 504
BsmI GAATGC 2 cut(s) 1163, 1513
BsnI GGCC 2 cut(s) 28, 1064
Bsp1286I GDGCHC 1 cut(s) 987
Bsp143I GATC 5 cut(s) 622, 841, 1099, 1422, 1488
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 2 cut(s) 308, 1460
BspANI GGCC 2 cut(s) 28, 1064
BspCNI CTCAG 1 cut(s) 1303
BspDI ATCGAT 1 cut(s) 875
BspFNI CGCG 1 cut(s) 1243
BspHI TCATGA 1 cut(s) 738
BspLI GGNNCC 6 cut(s) 198, 262, 312, 530, 955, 1344
BspOI GCTAGC 1 cut(s) 1331
BspPI GGATC 2 cut(s) 1094, 1496
BspT107I GGYRCC 2 cut(s) 196, 260
BspTI CTTAAG 2 cut(s) 131, 1265
BsrDI GCAATG 2 cut(s) 813, 949
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 3 cut(s) 751, 1022, 1346
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 532, 705
BssMI GATC 5 cut(s) 622, 841, 1099, 1422, 1488
BssNAI GTATAC 1 cut(s) 701
BssT1I CCWWGG 2 cut(s) 532, 705
Bst1107I GTATAC 1 cut(s) 701
Bst2UI CCWGG 3 cut(s) 141, 507, 995
Bst4CI ACNGT 8 cut(s) 184, 204, 368, 691, 826, 1036, 1495, 1531
Bst6I CTCTTC 1 cut(s) 515
BstAFI CTTAAG 2 cut(s) 131, 1265
BstC8I GCNNGC 3 cut(s) 306, 1241, 1329
BstDEI CTNAG 1 cut(s) 1311
BstDSI CCRYGG 1 cut(s) 705
BstF5I GGATG 5 cut(s) 457, 583, 642, 715, 1177
BstFNI CGCG 1 cut(s) 1243
BstH2I RGCGCY 1 cut(s) 795
BstHHI GCGC 1 cut(s) 794
BstKTI GATC 5 cut(s) 625, 844, 1102, 1425, 1491
BstMAI GTCTC 3 cut(s) 173, 203, 504
BstMBI GATC 5 cut(s) 622, 841, 1099, 1422, 1488
BstMWI GCNNNNNNNGC 3 cut(s) 305, 1061, 1457
BstNI CCWGG 3 cut(s) 141, 507, 995
BstSCI CCNGG 4 cut(s) 139, 505, 717, 993
BstUI CGCG 1 cut(s) 1243
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 562
BstXI CCANNNNNNTGG 2 cut(s) 235, 829
BstZ17I GTATAC 1 cut(s) 701
Bsu15I ATCGAT 1 cut(s) 875
BsuI GTATCC 1 cut(s) 1264
BsuRI GGCC 2 cut(s) 28, 1064
BsuTUI ATCGAT 1 cut(s) 875
BtgI CCRYGG 1 cut(s) 705
BtgZI GCGATG 1 cut(s) 1449
BtsCI GGATG 5 cut(s) 457, 583, 642, 715, 1177
BtsIMutI CAGTG 3 cut(s) 200, 373, 822
Cac8I GCNNGC 3 cut(s) 306, 1241, 1329
CciI TCATGA 1 cut(s) 738
CfoI GCGC 1 cut(s) 794
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 27, 1063
ClaI ATCGAT 1 cut(s) 875
CseI GACGC 2 cut(s) 521, 1232
Csp6I GTAC 2 cut(s) 435, 1235
CviAII CATG 5 cut(s) 157, 696, 706, 739, 1187
CviQI GTAC 2 cut(s) 435, 1235
DdeI CTNAG 1 cut(s) 1311
DpnI GATC 5 cut(s) 624, 843, 1101, 1424, 1490
DpnII GATC 5 cut(s) 622, 841, 1099, 1422, 1488
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
EciI GGCGGA 1 cut(s) 1475
Eco130I CCWWGG 2 cut(s) 532, 705
Eco32I GATATC 1 cut(s) 343
EcoRI GAATTC 2 cut(s) 856, 1091
EcoRII CCWGG 3 cut(s) 139, 505, 993
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 2 cut(s) 532, 705
ErhI CCWWGG 2 cut(s) 532, 705
Esp3I CGTCTC 1 cut(s) 504
FaeI CATG 5 cut(s) 160, 699, 709, 742, 1190
FalI AAGNNNNNCTT 4 cut(s) 1031, 1063, 1097, 1129
FatI CATG 5 cut(s) 156, 695, 705, 738, 1186
FbaI TGATCA 1 cut(s) 1422
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 5 cut(s) 464, 590, 649, 722, 1184
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 4 cut(s) 800, 1128, 1247, 1328
GlaI GCGC 1 cut(s) 793
GluI GCNGC 1 cut(s) 492
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 866
HaeII RGCGCY 1 cut(s) 795
HaeIII GGCC 2 cut(s) 28, 1064
HapII CCGG 5 cut(s) 264, 305, 618, 718, 1254
HgaI GACGC 2 cut(s) 521, 1232
HhaI GCGC 1 cut(s) 794
Hin1II CATG 5 cut(s) 160, 699, 709, 742, 1190
Hin6I GCGC 1 cut(s) 792
HinP1I GCGC 1 cut(s) 792
HincII GTYRAC 2 cut(s) 172, 817
HindII GTYRAC 2 cut(s) 172, 817
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 6 cut(s) 5, 211, 735, 1131, 1250, 1307
HpaII CCGG 5 cut(s) 264, 305, 618, 718, 1254
HphI GGTGA 3 cut(s) 277, 416, 1432
Hpy166II GTNNAC 5 cut(s) 162, 172, 701, 817, 1235
Hpy188I TCNGA 9 cut(s) 315, 467, 727, 841, 896, 958, 1083, 1312, 1358
Hpy188III TCNNGA 5 cut(s) 647, 739, 845, 1247, 1375
Hpy8I GTNNAC 5 cut(s) 162, 172, 701, 817, 1235
HpyAV CCTTC 2 cut(s) 945, 1460
HpyCH4III ACNGT 8 cut(s) 184, 204, 368, 691, 826, 1036, 1495, 1531
HpyCH4IV ACGT 2 cut(s) 188, 990
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 1061, 1457
HpyF3I CTNAG 1 cut(s) 1311
HpySE526I ACGT 2 cut(s) 188, 990
Hsp92II CATG 5 cut(s) 160, 699, 709, 742, 1190
HspAI GCGC 1 cut(s) 792
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 1422
Kzo9I GATC 5 cut(s) 622, 841, 1099, 1422, 1488
LmnI GCTCC 3 cut(s) 927, 959, 982
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 7 cut(s) 535, 568, 731, 881, 1042, 1162, 1328
MaeI CTAG 4 cut(s) 800, 1128, 1247, 1328
MaeII ACGT 2 cut(s) 188, 990
MaeIII GTNAC 3 cut(s) 184, 326, 422
MalI GATC 5 cut(s) 624, 843, 1101, 1424, 1490
MboI GATC 5 cut(s) 622, 841, 1099, 1422, 1488
MboII GAAGA 6 cut(s) 532, 562, 1166, 1422, 1457, 1516
MfeI CAATTG 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 987
MlyI GAGTC 3 cut(s) 205, 729, 1259
MmeI TCCRAC 1 cut(s) 1336
MroNI GCCGGC 1 cut(s) 304
MseI TTAA 7 cut(s) 132, 363, 375, 392, 920, 1266, 1518
MspA1I CMGCKG 2 cut(s) 542, 974
MspCI CTTAAG 2 cut(s) 131, 1265
MspI CCGG 5 cut(s) 264, 305, 618, 718, 1254
MspR9I CCNGG 4 cut(s) 141, 507, 719, 995
MunI CAATTG 1 cut(s) 355
Mva1269I GAATGC 2 cut(s) 1163, 1513
MvaI CCWGG 3 cut(s) 141, 507, 995
MvnI CGCG 1 cut(s) 1243
MwoI GCNNNNNNNGC 3 cut(s) 305, 1061, 1457
NaeI GCCGGC 1 cut(s) 306
NciI CCSGG 1 cut(s) 719
NcoI CCATGG 1 cut(s) 705
NdeII GATC 5 cut(s) 622, 841, 1099, 1422, 1488
NgoMIV GCCGGC 1 cut(s) 304
NheI GCTAGC 1 cut(s) 1327
NlaIII CATG 5 cut(s) 160, 699, 709, 742, 1190
NlaIV GGNNCC 6 cut(s) 198, 262, 312, 530, 955, 1344
NmuCI GTSAC 2 cut(s) 184, 422
PagI TCATGA 1 cut(s) 738
PctI GAATGC 2 cut(s) 1163, 1513
PdiI GCCGGC 1 cut(s) 306
PfeI GAWTC 3 cut(s) 5, 1131, 1307
PflMI CCANNNNNTGG 1 cut(s) 1374
PkrI GCNGC 1 cut(s) 493
PleI GAGTC 3 cut(s) 205, 729, 1258
PpsI GAGTC 3 cut(s) 205, 729, 1258
PsiI TTATAA 1 cut(s) 441
Psp6I CCWGG 3 cut(s) 139, 505, 993
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 3 cut(s) 139, 505, 993
PspN4I GGNNCC 6 cut(s) 198, 262, 312, 530, 955, 1344
PspPI GGNCC 2 cut(s) 27, 1063
PvuII CAGCTG 2 cut(s) 542, 974
RsaI GTAC 2 cut(s) 436, 1236
RsaNI GTAC 2 cut(s) 435, 1235
SaqAI TTAA 7 cut(s) 132, 363, 375, 392, 920, 1266, 1518
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 5 cut(s) 622, 841, 1099, 1422, 1488
Sau96I GGNCC 2 cut(s) 27, 1063
SchI GAGTC 3 cut(s) 205, 729, 1259
ScrFI CCNGG 4 cut(s) 141, 507, 719, 995
SduI GDGCHC 1 cut(s) 987
SfaNI GCATC 7 cut(s) 535, 568, 731, 881, 1042, 1162, 1328
SmlI CTYRAG 3 cut(s) 131, 1265, 1332
SmoI CTYRAG 3 cut(s) 131, 1265, 1332
SsiI CCGC 2 cut(s) 308, 1460
SspMI CTAG 4 cut(s) 800, 1128, 1247, 1328
StyD4I CCNGG 4 cut(s) 139, 505, 717, 993
StyI CCWWGG 2 cut(s) 532, 705
TaaI ACNGT 8 cut(s) 184, 204, 368, 691, 826, 1036, 1495, 1531
TaiI ACGT 2 cut(s) 191, 993
TaqI TCGA 3 cut(s) 573, 875, 1389
TfiI GAWTC 3 cut(s) 5, 1131, 1307
Tru1I TTAA 7 cut(s) 132, 363, 375, 392, 920, 1266, 1518
Tru9I TTAA 7 cut(s) 132, 363, 375, 392, 920, 1266, 1518
TscAI CASTG 3 cut(s) 207, 373, 829
TseFI GTSAC 2 cut(s) 184, 422
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 2 cut(s) 184, 422
TspDTI ATGAA 6 cut(s) 376, 473, 684, 726, 755, 869
TspGWI ACGGA 2 cut(s) 747, 1319
TspRI CASTG 3 cut(s) 207, 373, 829
Van91I CCANNNNNTGG 1 cut(s) 1374
Vha464I CTTAAG 2 cut(s) 131, 1265
XapI RAATTY 4 cut(s) 107, 460, 856, 1091
XbaI TCTAGA 1 cut(s) 1246
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 700
XspI CTAG 4 cut(s) 800, 1128, 1247, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.