FvH4_2g39500

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011737
Physical Location & Seq
Forward (+)
28359757 .. 28364673
4917 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39500.t1

Sequence Viewer

Length: 1566 bp
ATGGATTCTTGCTGTGCGACTCTGAAGGCTAATGCCCTTCCGGTTAAAGTCGGAGGAGGTCTTAGGAACCAAAGTAATGGCTTTTGGGGTGAGAGAATCAAAAGCAGAGATTCGAATACCCAATTGTTCAAAAGTGTGAAATCTGAAAGGAAGATCAAGTCTGGTGTGGTACACTCTATTCTTACTTCTCCTGAATTAAACCAAGACAATGTGACTTTTCAGGCACCATTATTTGAGACTCAAAAAGCTGACCCCAAAAATGTTGCTTCTATCATTTTGGGTGGAGGTGCTGGAACTCGACTATTTCCACTCACCAGCAGAAGAGCCAAGCCAGCGGTTCCAATCGGAGGGTGTTACAGACTTATTGATATCCCAATGAGTAATTGCATTAATAGTGGCATCAAAAAGATATTTATACTAACACAATTCAACTCTTTCTCACTCAATCGTCACCTTGCTCGTACTTACAATTTTGGAGATGGTATGAATTTTGGAGATGGGTTTGTGGAGGTTTTGGCTGCCACACAAACACCTGGAGAAGCTGGGAAAAAATGGTTCCAAGGAACAGCTGATGCTGTAAGACAATTTATATGGGTATTTGAGGATGCTAAGAACAAAAATGTTGAGCATATAGTGATATTATCTGGCGATCACCTCTATCGGATGAACTATCTAGATTTTGTGCAGAGACATATTGACACAAATGCCGACATTACAGTTTCATGCATACCCATGGATGAGACCCGTGCATCAGATTACGGGCTAATGAAAATTGACCAGTCCGGTCGTATAGTTCAATTTGCTGAGAAACCTAAAGGCATCGATCTAGAAGCAATGCAAGTTGATACCAGAGTACTAGGGCTTTCTGAGCTAGATGCTATGAAAAATCCTTATATCGCATCAATGGGTGTTTATGTGTTTAGAACTGATGTCCTTCTAAGACTATTAAGATTTAGCTACCCTTCTTCCAATGATTTTGGCTCTGAGGTTATTCCAGCAGCTGTGAGGGACCACAATGTCCAGGCATATTTGTTCAATGACTACTGGGAGGATATTGGAACTATAAAATCGTTTTTTGATGCCAACTTGGCCCTCACAGAGCAGCCTCCAAAGTTTGAGTTCAATGATCCAAAGACACCTTTCTACACCTCTCCTAGGTTCTTGCCACCTACTAAAGTTGAAAAATGCAGGATTATGGATGCAATAATATCGCATGGTTGCTTCTTACGAGAATGCAGTGTTCAACACTCCATAGTTGGTGTGCGCTCACGATTGGAGTACGGTGCAGAACTGAAGGATACTATGATGATGGGTGCAGACTACTACCAAACCGAAGAGGAAATTGCATCTCTACTAGCTAATGGAAAGGTTCCAGTTGGTGTGGGAGAAAATACCAAAATCTGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAGAAACGTGGTCATCACAAATGGTGATGGAGTTGAAGAAGCAGAGAGACCGGAGGATGGGTTTTACATTAGGTCTGGAATCACAGTCGTACTGAAGAACGCTACCATTAAAGATGGAACTATCATATAA

Protein Analysis

522

Amino Acids

57.98

Weight (kDa)

6.73

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 90 - 367 8.1e-74 Nucleotidyl transferase
LbH_GLGC PF25247 386 - 520 5.8e-54 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27680
fragaria_vesca FvH4_2g39500 FvH4_2g39500
malus_domestica MD08G1027900.v1.1 MD15G1023900.v1.1
prunus_persica Prupe.1G376200_v2.0.a1
pyrus_communis pycom08g02220 pycom15g02050
rosa_chinensis RchiOBHm_Chr6g0301451
rosa_laevigata RLG00000011252
rosa_multiflora Rmu_sc0014417.1_g000012
rosa_roxburghii Rroxscaffold_7G00166810
rosa_rugosa Rorug06G0304800 Rorug06G0304900
rosa_samantha Rh6AG418500 Rh6BG424700 Rh6CG432000 Rh6DG417900
rosa_wichuraiana Rw6G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1016
AccB1I GGYRCC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 1401
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 1121
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 3 cut(s) 44, 1313, 1550
AfaI GTAC 5 cut(s) 171, 463, 855, 1280, 1527
AfiI CCNNNNNNNGG 4 cut(s) 347, 1155, 1401, 1493
AgsI TTSAA 8 cut(s) 130, 430, 797, 1036, 1123, 1181, 1244, 1472
AjnI CCWGG 2 cut(s) 532, 1020
AluBI AGCT 7 cut(s) 248, 542, 569, 871, 957, 1001, 1358
AluI AGCT 7 cut(s) 248, 542, 569, 871, 957, 1001, 1358
Alw26I GTCTC 4 cut(s) 230, 682, 734, 1477
AlwI GGATC 1 cut(s) 1121
AlwNI CAGNNNCTG 1 cut(s) 1001
AoxI GGCC 1 cut(s) 1089
ApeKI GCWGC 3 cut(s) 518, 998, 1102
ApoI RAATTY 1 cut(s) 487
AseI ATTAAT 1 cut(s) 390
AspA2I CCTAGG 1 cut(s) 1154
AspLEI GCGC 1 cut(s) 1266
AspS9I GGNCC 2 cut(s) 1009, 1090
AsuHPI GGTGA 5 cut(s) 101, 304, 443, 644, 1472
AsuII TTCGAA 1 cut(s) 113
AvaII GGWCC 1 cut(s) 1009
AvrII CCTAGG 1 cut(s) 1154
BaeI ACNNNNGTAYC 2 cut(s) 837, 870
BanI GGYRCC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 505, 1010, 1114
BccI CCATC 6 cut(s) 473, 491, 1303, 1457, 1487, 1544
BcgI CGANNNNNNTGC 4 cut(s) 1191, 1225, 1406, 1440
BciT130I CCWGG 2 cut(s) 534, 1022
BciVI GTATCC 1 cut(s) 1291
BcoDI GTCTC 4 cut(s) 230, 682, 734, 1477
BfaI CTAG 6 cut(s) 674, 827, 857, 872, 1155, 1355
BfuI GTATCC 1 cut(s) 1291
BglI GCCNNNNNGGC 1 cut(s) 1088
BisI GCNGC 3 cut(s) 519, 999, 1103
BlnI CCTAGG 1 cut(s) 1154
BlsI GCNGC 3 cut(s) 520, 1000, 1104
BmcAI AGTACT 1 cut(s) 855
Bme1390I CCNGG 2 cut(s) 534, 1022
Bme18I GGWCC 1 cut(s) 1009
BmgT120I GGNCC 2 cut(s) 1009, 1090
BmiI GGNNCC 6 cut(s) 68, 225, 339, 557, 1010, 1371
BmrFI CCNGG 2 cut(s) 534, 1022
BmrI ACTGGG 1 cut(s) 1054
BmuI ACTGGG 1 cut(s) 1054
BpmI CTGGAG 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 822
BsaI GGTCTC 2 cut(s) 734, 1477
BsaJI CCNNGG 3 cut(s) 559, 732, 1154
BsaWI WCCGGW 3 cut(s) 40, 782, 1486
BsaXI ACNNNNNCTCC 2 cut(s) 1481, 1511
Bsc4I CCNNNNNNNGG 4 cut(s) 347, 1155, 1401, 1493
Bse1I ACTGG 3 cut(s) 778, 1049, 1373
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 2 cut(s) 534, 1022
BseCI ATCGAT 1 cut(s) 822
BseDI CCNNGG 3 cut(s) 559, 732, 1154
BseGI GGATG 5 cut(s) 610, 669, 742, 1204, 1498
BseLI CCNNNNNNNGG 4 cut(s) 347, 1155, 1401, 1493
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 3 cut(s) 795, 858, 975
BseNI ACTGG 3 cut(s) 778, 1049, 1373
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 3 cut(s) 505, 1010, 1114
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 3 cut(s) 704, 1305, 1335
Bsh1285I CGRYCG 1 cut(s) 787
BshFI GGCC 1 cut(s) 1091
BshNI GGYRCC 1 cut(s) 223
BshVI ATCGAT 1 cut(s) 822
BsiEI CGRYCG 1 cut(s) 787
BsiSI CCGG 3 cut(s) 41, 783, 1487
BslFI GGGAC 1 cut(s) 1022
BslI CCNNNNNNNGG 4 cut(s) 347, 1155, 1401, 1493
BsmAI GTCTC 4 cut(s) 230, 682, 734, 1477
BsmFI GGGAC 1 cut(s) 1022
BsmI GAATGC 2 cut(s) 1238, 1429
BsnI GGCC 1 cut(s) 1091
Bso31I GGTCTC 2 cut(s) 734, 1477
Bsp119I TTCGAA 1 cut(s) 113
Bsp143I GATC 4 cut(s) 153, 649, 823, 1126
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 1091
BspCNI CTCAG 3 cut(s) 796, 859, 976
BspDI ATCGAT 1 cut(s) 822
BspLI GGNNCC 6 cut(s) 68, 225, 339, 557, 1010, 1371
BspPI GGATC 1 cut(s) 1121
BspQI GCTCTTC 1 cut(s) 316
BspT104I TTCGAA 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 223
BspTNI GGTCTC 2 cut(s) 734, 1477
BsrDI GCAATG 1 cut(s) 840
BsrI ACTGG 3 cut(s) 778, 1049, 1373
BssECI CCNNGG 3 cut(s) 559, 732, 1154
BssMI GATC 4 cut(s) 153, 649, 823, 1126
BssT1I CCWWGG 3 cut(s) 559, 732, 1154
Bst2UI CCWGG 2 cut(s) 534, 1022
Bst4CI ACNGT 3 cut(s) 718, 1283, 1522
Bst6I CTCTTC 2 cut(s) 316, 1329
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 6 cut(s) 62, 609, 804, 867, 938, 984
BstDSI CCRYGG 1 cut(s) 732
BstENI CCTNNNNNAGG 1 cut(s) 1153
BstF5I GGATG 5 cut(s) 610, 669, 742, 1204, 1498
BstHHI GCGC 1 cut(s) 1266
BstKTI GATC 4 cut(s) 156, 652, 826, 1129
BstMAI GTCTC 4 cut(s) 230, 682, 734, 1477
BstMBI GATC 4 cut(s) 153, 649, 823, 1126
BstMCI CGRYCG 1 cut(s) 787
BstMWI GCNNNNNNNGC 3 cut(s) 332, 868, 1088
BstNI CCWGG 2 cut(s) 534, 1022
BstSCI CCNGG 2 cut(s) 532, 1020
BstV1I GCAGC 3 cut(s) 505, 1010, 1114
BstXI CCANNNNNNTGG 1 cut(s) 77
Bsu15I ATCGAT 1 cut(s) 822
BsuI GTATCC 1 cut(s) 1291
BsuRI GGCC 1 cut(s) 1091
BsuTUI ATCGAT 1 cut(s) 822
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 5 cut(s) 610, 669, 742, 1204, 1498
BtsI GCAGTG 1 cut(s) 1243
BtsIMutI CAGTG 1 cut(s) 1243
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 1001
CfoI GCGC 1 cut(s) 1266
Cfr13I GGNCC 2 cut(s) 1009, 1090
ClaI ATCGAT 1 cut(s) 822
Csp6I GTAC 5 cut(s) 170, 462, 854, 1279, 1526
CviAII CATG 3 cut(s) 723, 733, 1214
CviQI GTAC 5 cut(s) 170, 462, 854, 1279, 1526
DdeI CTNAG 6 cut(s) 62, 609, 804, 867, 938, 984
DpnI GATC 4 cut(s) 155, 651, 825, 1128
DpnII GATC 4 cut(s) 153, 649, 823, 1126
DrdI GACNNNNNNGTC 1 cut(s) 1016
DseDI GACNNNNNNGTC 1 cut(s) 1016
Eam1104I CTCTTC 2 cut(s) 316, 1329
EarI CTCTTC 2 cut(s) 316, 1329
Eco130I CCWWGG 3 cut(s) 559, 732, 1154
Eco31I GGTCTC 2 cut(s) 734, 1477
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 1009
Eco57I CTGAAG 3 cut(s) 44, 1313, 1550
EcoNI CCTNNNNNAGG 1 cut(s) 1153
EcoRII CCWGG 2 cut(s) 532, 1020
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 3 cut(s) 559, 732, 1154
EcoT22I ATGCAT 1 cut(s) 728
ErhI CCWWGG 3 cut(s) 559, 732, 1154
FaeI CATG 3 cut(s) 726, 736, 1217
FaqI GGGAC 1 cut(s) 1022
FatI CATG 3 cut(s) 722, 732, 1213
Fnu4HI GCNGC 3 cut(s) 519, 999, 1103
FokI GGATG 5 cut(s) 617, 676, 749, 1211, 1505
Fsp4HI GCNGC 3 cut(s) 519, 999, 1103
FspBI CTAG 6 cut(s) 674, 827, 857, 872, 1155, 1355
GlaI GCGC 1 cut(s) 1265
GluI GCNGC 3 cut(s) 519, 999, 1103
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 1 cut(s) 1091
HapII CCGG 3 cut(s) 41, 783, 1487
HhaI GCGC 1 cut(s) 1266
Hin1II CATG 3 cut(s) 726, 736, 1217
Hin6I GCGC 1 cut(s) 1264
HinP1I GCGC 1 cut(s) 1264
HinfI GANTC 6 cut(s) 5, 19, 96, 110, 238, 1515
HpaII CCGG 3 cut(s) 41, 783, 1487
HphI GGTGA 5 cut(s) 101, 304, 443, 644, 1472
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 8 cut(s) 24, 53, 145, 347, 663, 754, 868, 985
Hpy188III TCNNGA 6 cut(s) 191, 674, 827, 1269, 1402, 1512
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 5 cut(s) 19, 47, 944, 972, 1288
HpyCH4III ACNGT 3 cut(s) 718, 1283, 1522
HpyCH4IV ACGT 1 cut(s) 1443
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 868, 1088
HpyF3I CTNAG 6 cut(s) 62, 609, 804, 867, 938, 984
HpySE526I ACGT 1 cut(s) 1443
Hsp92II CATG 3 cut(s) 726, 736, 1217
HspAI GCGC 1 cut(s) 1264
Kzo9I GATC 4 cut(s) 153, 649, 823, 1126
LguI GCTCTTC 1 cut(s) 316
Lsp1109I GCAGC 3 cut(s) 505, 1010, 1114
MaeI CTAG 6 cut(s) 674, 827, 857, 872, 1155, 1355
MaeII ACGT 1 cut(s) 1443
MaeIII GTNAC 3 cut(s) 211, 353, 449
MalI GATC 4 cut(s) 155, 651, 825, 1128
MboI GATC 4 cut(s) 153, 649, 823, 1126
MboII GAAGA 7 cut(s) 163, 333, 957, 1346, 1449, 1484, 1543
MfeI CAATTG 1 cut(s) 122
MlyI GAGTC 2 cut(s) 13, 232
MmeI TCCRAC 1 cut(s) 31
Mph1103I ATGCAT 1 cut(s) 728
MseI TTAA 5 cut(s) 45, 197, 390, 947, 1545
MslI CAYNNNNRTG 1 cut(s) 731
MspA1I CMGCKG 3 cut(s) 335, 569, 1001
MspI CCGG 3 cut(s) 41, 783, 1487
MspR9I CCNGG 2 cut(s) 534, 1022
MunI CAATTG 1 cut(s) 122
Mva1269I GAATGC 2 cut(s) 1238, 1429
MvaI CCWGG 2 cut(s) 534, 1022
MwoI GCNNNNNNNGC 3 cut(s) 332, 868, 1088
NcoI CCATGG 1 cut(s) 732
NdeII GATC 4 cut(s) 153, 649, 823, 1126
NlaIII CATG 3 cut(s) 726, 736, 1217
NlaIV GGNNCC 6 cut(s) 68, 225, 339, 557, 1010, 1371
NmuCI GTSAC 2 cut(s) 211, 449
NsiI ATGCAT 1 cut(s) 728
NspV TTCGAA 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 316
PctI GAATGC 2 cut(s) 1238, 1429
PfeI GAWTC 4 cut(s) 5, 96, 110, 1515
PflMI CCANNNNNTGG 1 cut(s) 1401
PkrI GCNGC 3 cut(s) 520, 1000, 1104
PleI GAGTC 2 cut(s) 13, 232
PpsI GAGTC 2 cut(s) 13, 232
PshBI ATTAAT 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 532, 1020
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 2 cut(s) 532, 1020
PspN4I GGNNCC 6 cut(s) 68, 225, 339, 557, 1010, 1371
PspPI GGNCC 2 cut(s) 1009, 1090
PstNI CAGNNNCTG 1 cut(s) 1001
PvuII CAGCTG 2 cut(s) 569, 1001
RsaI GTAC 5 cut(s) 171, 463, 855, 1280, 1527
RsaNI GTAC 5 cut(s) 170, 462, 854, 1279, 1526
RseI CAYNNNNRTG 1 cut(s) 731
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 5 cut(s) 45, 197, 390, 947, 1545
SatI GCNGC 3 cut(s) 519, 999, 1103
Sau3AI GATC 4 cut(s) 153, 649, 823, 1126
Sau96I GGNCC 2 cut(s) 1009, 1090
ScaI AGTACT 1 cut(s) 855
SchI GAGTC 2 cut(s) 13, 232
ScrFI CCNGG 2 cut(s) 534, 1022
SfuI TTCGAA 1 cut(s) 113
SinI GGWCC 1 cut(s) 1009
SmiMI CAYNNNNRTG 1 cut(s) 731
SsiI CCGC 1 cut(s) 335
SspMI CTAG 6 cut(s) 674, 827, 857, 872, 1155, 1355
StyD4I CCNGG 2 cut(s) 532, 1020
StyI CCWWGG 3 cut(s) 559, 732, 1154
TaaI ACNGT 3 cut(s) 718, 1283, 1522
TaiI ACGT 1 cut(s) 1446
TaqI TCGA 4 cut(s) 113, 298, 822, 1416
TatI WGTACW 1 cut(s) 853
TfiI GAWTC 4 cut(s) 5, 96, 110, 1515
Tru1I TTAA 5 cut(s) 45, 197, 390, 947, 1545
Tru9I TTAA 5 cut(s) 45, 197, 390, 947, 1545
TscAI CASTG 1 cut(s) 1243
TseFI GTSAC 2 cut(s) 211, 449
TseI GCWGC 3 cut(s) 518, 998, 1102
Tsp45I GTSAC 2 cut(s) 211, 449
TspDTI ATGAA 5 cut(s) 500, 680, 711, 782, 896
TspRI CASTG 1 cut(s) 1243
Van91I CCANNNNNTGG 1 cut(s) 1401
VpaK11BI GGWCC 1 cut(s) 1009
VspI ATTAAT 1 cut(s) 390
XagI CCTNNNNNAGG 1 cut(s) 1153
XapI RAATTY 1 cut(s) 487
XbaI TCTAGA 2 cut(s) 673, 826
XmaJI CCTAGG 1 cut(s) 1154
XspI CTAG 6 cut(s) 674, 827, 857, 872, 1155, 1355
ZrmI AGTACT 1 cut(s) 855
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.