RchiOBHm_Chr6g0301451

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011737
Physical Location & Seq
Reverse (-)
61836137 .. 61840277
4141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27074

Sequence Viewer

Length: 1581 bp
ATGGATTCTTGCTGTGCGACTCTGAAGGCTAATGCCCTTCCTGTTAAAGTCAGAGAAGGAGGTCTTAGGAACCAAGGTAATGGCTTTTGGGGTGAGAGTATCAGAGGGAGTCTGAAAAGCAGAGATTTGAGTACCCAATTGTTGAAAAGCTTGAAATCTGAAAGAAAGATCAAGCCTGGTGTGACACACTCTATTCTTACCTCTCCTGATATCAGCCAAGATAATGTGACATTTCAGGCACCATTATTTGAGACTCCAAAAGCTGACCCAAAGAATGTTGCTTCTATCATTTTGGGTGGAGGTGCTGGAACTCGACTATTTCCACTCACCAGCAAAAGAGCCAAGCCAGCGGTTCCAATTGGAGGGTGTTACAGGCTTATTGATATCCCAATGAGTAATTGCATTAATAGTGGCATCAAAAAGATATTCATACTAACACAATTCAACTCTTTCTCACTCAATCGCCACCTTGCTCGTACTTACAATTTTGGAGATGGTATGAATTTCGGAGATGGTTTTGTGGAGGTTTTAGCAGCCACACAAACACCGGGAGAAGCTGGGAAAAAATGGTTTCAAGGAACAGCTGATGCTGTGAGACAATTTATATGGGTGTTTGAGGATGCTAAGAACAAAAATGTTGAGCATATAGTGATATTATCCGGCGATCACCTCTACCGGATGAACTATTTGGATTTTGTGCAGAAACATATTGACACAAATGCCGACATTACAGTATCATGCATACCTATGGATGAGACCCGCGCATCAGATTATGGTCTCATGAAAATTGACCAGTCGGGTCGTATCGTCCACTTTGCCGAGAAACCTAAAGGCATCGATCTAGAAGCAATGCAAGTTGATACCACTGTACTAGGGCTTTCTGAGCTAGATGCTATGACAAATCCTTATATCGCATCAATGGGTGTTTATGTATTTAGAACTGATGTCCTACTAAAGCTATTAAGATTTAGTTACCCTTCTTCCAATGATTTTGGCTCTGAGATTATTCCAGCAGCTGTGAGGGAGCACAATGTCCAGGCATATCTGTTCAATGACTACTGGGAGGATATTGGAACCGTAAAATCTTTTTTTGATGCCAACTTGGCCCTCACAGAACAGCCTCCAAAGTTTGAATTCAATGATCCAAAGACACCTTTCTACACCTCTCCCAGATTCTTGCCACCTACTAAAGTTGAAAAATGCAGGATTATGGATGCAATAATATCACACGGTTGCTTCTTACGAGAATGTAGTGTTCAACACTCCATAGTTGGGGTGCGGTCACGTTTGGAGTACGGTGTTGAACTGAAGGATACTATGATGATGGGTGCAGACTACTACCAAACTGAAGAAGAGATTGCATCTCTGCTAGCTGATGGAAAGGTTCCAGTTGGTGTGGGAGAAAATACCAAAATCTGGAACTGTATAATCGACAAGAATGCGAAGATCGGAAGAAATGTGGTGATCACAAATGCTGATGGAGTTGAAGAAGCAGAGAGGGCAGAGGAAGGGTTTTACATTAGGTCCGGAATCACTGTCGTACTGAAGAACGCAACCATTAATGATGGAACTATTATATAA

Protein Analysis

526

Amino Acids

58.32

Weight (kDa)

6.06

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 95 - 372 5.7e-74 Nucleotidyl transferase
LbH_GLGC PF25247 391 - 525 9.9e-54 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27680
fragaria_vesca FvH4_2g39500 FvH4_2g39500
malus_domestica MD08G1027900.v1.1 MD15G1023900.v1.1
prunus_persica Prupe.1G376200_v2.0.a1
pyrus_communis pycom08g02220 pycom15g02050
rosa_chinensis RchiOBHm_Chr6g0301451
rosa_laevigata RLG00000011252
rosa_multiflora Rmu_sc0014417.1_g000012
rosa_roxburghii Rroxscaffold_7G00166810
rosa_rugosa Rorug06G0304800 Rorug06G0304900
rosa_samantha Rh6AG418500 Rh6BG424700 Rh6CG432000 Rh6DG417900
rosa_wichuraiana Rw6G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 1416
AccII CGCG 1 cut(s) 762
AccIII TCCGGA 1 cut(s) 1526
AciI CCGC 3 cut(s) 350, 760, 1279
AclWI GGATC 1 cut(s) 1136
AcsI RAATTY 2 cut(s) 502, 1133
AcuI CTGAAG 4 cut(s) 44, 1328, 1368, 1565
AfaI GTAC 5 cut(s) 133, 478, 870, 1295, 1542
AfiI CCNNNNNNNGG 3 cut(s) 362, 1272, 1416
AjnI CCWGG 2 cut(s) 175, 1035
AluBI AGCT 8 cut(s) 150, 263, 557, 584, 886, 958, 1016, 1373
AluI AGCT 8 cut(s) 150, 263, 557, 584, 886, 958, 1016, 1373
Alw21I GWGCWC 1 cut(s) 1029
Alw26I GTCTC 4 cut(s) 245, 589, 749, 782
AlwI GGATC 1 cut(s) 1136
AlwNI CAGNNNCTG 1 cut(s) 1016
Aor13HI TCCGGA 1 cut(s) 1526
AoxI GGCC 1 cut(s) 1104
ApeKI GCWGC 2 cut(s) 533, 1013
ApoI RAATTY 2 cut(s) 502, 1133
AseI ATTAAT 2 cut(s) 405, 1560
AspLEI GCGC 1 cut(s) 764
AspS9I GGNCC 2 cut(s) 1105, 1524
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 4 cut(s) 104, 319, 659, 1474
AsuNHI GCTAGC 1 cut(s) 1369
AvaII GGWCC 1 cut(s) 1524
BaeI ACNNNNGTAYC 2 cut(s) 852, 885
BanI GGYRCC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 1029
BbvI GCAGC 2 cut(s) 545, 1025
BccI CCATC 6 cut(s) 488, 506, 1318, 1370, 1472, 1559
BcgI CGANNNNNNTGC 2 cut(s) 1421, 1455
BciT130I CCWGG 2 cut(s) 177, 1037
BciVI GTATCC 1 cut(s) 1306
BclI TGATCA 1 cut(s) 1464
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 4 cut(s) 245, 589, 749, 782
BfaI CTAG 4 cut(s) 842, 872, 887, 1370
BfuI GTATCC 1 cut(s) 1306
BglI GCCNNNNNGGC 1 cut(s) 1103
BisI GCNGC 2 cut(s) 534, 1014
BlsI GCNGC 2 cut(s) 535, 1015
Bme1390I CCNGG 3 cut(s) 177, 549, 1037
Bme18I GGWCC 1 cut(s) 1524
BmgT120I GGNCC 2 cut(s) 1105, 1524
BmiI GGNNCC 5 cut(s) 71, 240, 354, 1075, 1386
BmrFI CCNGG 3 cut(s) 177, 549, 1037
BmrI ACTGGG 1 cut(s) 1069
BmtI GCTAGC 1 cut(s) 1373
BmuI ACTGGG 1 cut(s) 1069
BpuMI CCSGG 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 837
BsaI GGTCTC 2 cut(s) 749, 782
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 2 cut(s) 675, 1526
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 1272, 1416
Bse1I ACTGG 3 cut(s) 793, 1064, 1388
Bse3DI GCAATG 1 cut(s) 855
BseAI TCCGGA 1 cut(s) 1526
BseBI CCWGG 2 cut(s) 177, 1037
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 4 cut(s) 625, 684, 757, 1219
BseLI CCNNNNNNNGG 3 cut(s) 362, 1272, 1416
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 2 cut(s) 873, 990
BseNI ACTGG 3 cut(s) 793, 1064, 1388
BseXI GCAGC 2 cut(s) 545, 1025
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 2 cut(s) 719, 1350
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 1 cut(s) 1106
BshNI GGYRCC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 1029
BsiSI CCGG 4 cut(s) 548, 660, 676, 1527
BslI CCNNNNNNNGG 3 cut(s) 362, 1272, 1416
BsmAI GTCTC 4 cut(s) 245, 589, 749, 782
BsmI GAATGC 1 cut(s) 1444
BsnI GGCC 1 cut(s) 1106
Bso31I GGTCTC 2 cut(s) 749, 782
Bsp1286I GDGCHC 1 cut(s) 1029
Bsp13I TCCGGA 1 cut(s) 1526
Bsp143I GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
BspACI CCGC 3 cut(s) 350, 760, 1279
BspANI GGCC 1 cut(s) 1106
BspCNI CTCAG 2 cut(s) 874, 991
BspDI ATCGAT 1 cut(s) 837
BspEI TCCGGA 1 cut(s) 1526
BspFNI CGCG 1 cut(s) 762
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 5 cut(s) 71, 240, 354, 1075, 1386
BspOI GCTAGC 1 cut(s) 1373
BspPI GGATC 1 cut(s) 1136
BspT107I GGYRCC 1 cut(s) 238
BspTNI GGTCTC 2 cut(s) 749, 782
BsrDI GCAATG 1 cut(s) 855
BsrI ACTGG 3 cut(s) 793, 1064, 1388
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 177, 1037
Bst4CI ACNGT 7 cut(s) 733, 868, 1078, 1232, 1298, 1424, 1537
Bst6I CTCTTC 1 cut(s) 1347
BstC8I GCNNGC 2 cut(s) 348, 1371
BstDEI CTNAG 4 cut(s) 65, 624, 882, 999
BstF5I GGATG 4 cut(s) 625, 684, 757, 1219
BstFNI CGCG 1 cut(s) 762
BstHHI GCGC 1 cut(s) 764
BstKTI GATC 6 cut(s) 171, 667, 841, 1144, 1449, 1467
BstMAI GTCTC 4 cut(s) 245, 589, 749, 782
BstMBI GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
BstMWI GCNNNNNNNGC 4 cut(s) 347, 883, 1103, 1499
BstNI CCWGG 2 cut(s) 177, 1037
BstSCI CCNGG 3 cut(s) 175, 547, 1035
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 2 cut(s) 545, 1025
BstXI CCANNNNNNTGG 1 cut(s) 80
Bsu15I ATCGAT 1 cut(s) 837
BsuI GTATCC 1 cut(s) 1306
BsuRI GGCC 1 cut(s) 1106
BsuTUI ATCGAT 1 cut(s) 837
BtsCI GGATG 4 cut(s) 625, 684, 757, 1219
BtsIMutI CAGTG 2 cut(s) 864, 1533
Cac8I GCNNGC 2 cut(s) 348, 1371
CaiI CAGNNNCTG 1 cut(s) 1016
CciI TCATGA 1 cut(s) 780
CfoI GCGC 1 cut(s) 764
Cfr13I GGNCC 2 cut(s) 1105, 1524
ClaI ATCGAT 1 cut(s) 837
Csp6I GTAC 5 cut(s) 132, 477, 869, 1294, 1541
CviAII CATG 2 cut(s) 738, 781
CviQI GTAC 5 cut(s) 132, 477, 869, 1294, 1541
DdeI CTNAG 4 cut(s) 65, 624, 882, 999
DpnI GATC 6 cut(s) 170, 666, 840, 1143, 1448, 1466
DpnII GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
Eam1104I CTCTTC 1 cut(s) 1347
EarI CTCTTC 1 cut(s) 1347
Eco130I CCWWGG 1 cut(s) 73
Eco31I GGTCTC 2 cut(s) 749, 782
Eco32I GATATC 2 cut(s) 211, 385
Eco47I GGWCC 1 cut(s) 1524
Eco57I CTGAAG 4 cut(s) 44, 1328, 1368, 1565
EcoRI GAATTC 1 cut(s) 1133
EcoRII CCWGG 2 cut(s) 175, 1035
EcoRV GATATC 2 cut(s) 211, 385
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 741, 784
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 2 cut(s) 737, 780
FauI CCCGC 1 cut(s) 767
FbaI TGATCA 1 cut(s) 1464
Fnu4HI GCNGC 2 cut(s) 534, 1014
FokI GGATG 4 cut(s) 632, 691, 764, 1226
Fsp4HI GCNGC 2 cut(s) 534, 1014
FspBI CTAG 4 cut(s) 842, 872, 887, 1370
GlaI GCGC 1 cut(s) 763
GluI GCNGC 2 cut(s) 534, 1014
GsaI CCCAGC 1 cut(s) 561
HaeIII GGCC 1 cut(s) 1106
HapII CCGG 4 cut(s) 548, 660, 676, 1527
HhaI GCGC 1 cut(s) 764
Hin1II CATG 2 cut(s) 741, 784
Hin6I GCGC 1 cut(s) 762
HinP1I GCGC 1 cut(s) 762
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 6 cut(s) 5, 19, 109, 253, 1173, 1530
HpaII CCGG 4 cut(s) 548, 660, 676, 1527
HphI GGTGA 4 cut(s) 104, 319, 659, 1474
Hpy166II GTNNAC 1 cut(s) 811
Hpy188III TCNNGA 5 cut(s) 206, 781, 842, 1417, 1527
Hpy8I GTNNAC 1 cut(s) 811
HpyAV CCTTC 6 cut(s) 19, 47, 50, 987, 1303, 1502
HpyCH4III ACNGT 7 cut(s) 733, 868, 1078, 1232, 1298, 1424, 1537
HpyCH4IV ACGT 1 cut(s) 1285
HpyCH4V TGCA 8 cut(s) 402, 700, 741, 853, 1203, 1217, 1331, 1361
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 883, 1103, 1499
HpyF3I CTNAG 4 cut(s) 65, 624, 882, 999
HpySE526I ACGT 1 cut(s) 1285
Hsp92II CATG 2 cut(s) 741, 784
HspAI GCGC 1 cut(s) 762
Kpn2I TCCGGA 1 cut(s) 1526
Ksp22I TGATCA 1 cut(s) 1464
Kzo9I GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
LmnI GCTCC 1 cut(s) 1024
Lsp1109I GCAGC 2 cut(s) 545, 1025
MaeI CTAG 4 cut(s) 842, 872, 887, 1370
MaeII ACGT 1 cut(s) 1285
MaeIII GTNAC 5 cut(s) 181, 226, 368, 971, 1281
MalI GATC 6 cut(s) 170, 666, 840, 1143, 1448, 1466
MboI GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
MboII GAAGA 7 cut(s) 972, 1361, 1364, 1456, 1464, 1499, 1558
MfeI CAATTG 2 cut(s) 137, 357
MhlI GDGCHC 1 cut(s) 1029
MluCI AATT 9 cut(s) 137, 357, 397, 440, 484, 502, 599, 786, 1133
MlyI GAGTC 3 cut(s) 13, 118, 247
Mph1103I ATGCAT 1 cut(s) 743
MroI TCCGGA 1 cut(s) 1526
MseI TTAA 4 cut(s) 45, 405, 962, 1560
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 3 cut(s) 350, 584, 1016
MspI CCGG 4 cut(s) 548, 660, 676, 1527
MspR9I CCNGG 3 cut(s) 177, 549, 1037
MunI CAATTG 2 cut(s) 137, 357
Mva1269I GAATGC 1 cut(s) 1444
MvaI CCWGG 2 cut(s) 177, 1037
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 4 cut(s) 347, 883, 1103, 1499
NciI CCSGG 1 cut(s) 549
NdeII GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
NheI GCTAGC 1 cut(s) 1369
NlaIII CATG 2 cut(s) 741, 784
NlaIV GGNNCC 5 cut(s) 71, 240, 354, 1075, 1386
NmeAIII GCCGAG 1 cut(s) 844
NmuCI GTSAC 3 cut(s) 181, 226, 1281
NsiI ATGCAT 1 cut(s) 743
PagI TCATGA 1 cut(s) 780
PctI GAATGC 1 cut(s) 1444
PfeI GAWTC 3 cut(s) 5, 1173, 1530
PflMI CCANNNNNTGG 1 cut(s) 1416
PkrI GCNGC 2 cut(s) 535, 1015
PleI GAGTC 3 cut(s) 13, 117, 247
PpsI GAGTC 3 cut(s) 13, 117, 247
PshBI ATTAAT 2 cut(s) 405, 1560
Psp6I CCWGG 2 cut(s) 175, 1035
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 175, 1035
PspN4I GGNNCC 5 cut(s) 71, 240, 354, 1075, 1386
PspPI GGNCC 2 cut(s) 1105, 1524
PstNI CAGNNNCTG 1 cut(s) 1016
PvuII CAGCTG 2 cut(s) 584, 1016
RsaI GTAC 5 cut(s) 133, 478, 870, 1295, 1542
RsaNI GTAC 5 cut(s) 132, 477, 869, 1294, 1541
RseI CAYNNNNRTG 1 cut(s) 746
SaqAI TTAA 4 cut(s) 45, 405, 962, 1560
SatI GCNGC 2 cut(s) 534, 1014
Sau3AI GATC 6 cut(s) 168, 664, 838, 1141, 1446, 1464
Sau96I GGNCC 2 cut(s) 1105, 1524
SchI GAGTC 3 cut(s) 13, 118, 247
ScrFI CCNGG 3 cut(s) 177, 549, 1037
SduI GDGCHC 1 cut(s) 1029
SinI GGWCC 1 cut(s) 1524
SmiMI CAYNNNNRTG 1 cut(s) 746
Sse9I AATT 9 cut(s) 137, 357, 397, 440, 484, 502, 599, 786, 1133
SsiI CCGC 3 cut(s) 350, 760, 1279
SspMI CTAG 4 cut(s) 842, 872, 887, 1370
StyD4I CCNGG 3 cut(s) 175, 547, 1035
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 7 cut(s) 733, 868, 1078, 1232, 1298, 1424, 1537
TaiI ACGT 1 cut(s) 1288
TaqI TCGA 3 cut(s) 313, 837, 1431
TasI AATT 9 cut(s) 137, 357, 397, 440, 484, 502, 599, 786, 1133
TatI WGTACW 1 cut(s) 868
TfiI GAWTC 3 cut(s) 5, 1173, 1530
Tru1I TTAA 4 cut(s) 45, 405, 962, 1560
Tru9I TTAA 4 cut(s) 45, 405, 962, 1560
TscAI CASTG 2 cut(s) 871, 1540
TseFI GTSAC 3 cut(s) 181, 226, 1281
TseI GCWGC 2 cut(s) 533, 1013
Tsp45I GTSAC 3 cut(s) 181, 226, 1281
TspDTI ATGAA 4 cut(s) 418, 515, 695, 797
TspRI CASTG 2 cut(s) 871, 1540
Van91I CCANNNNNTGG 1 cut(s) 1416
VpaK11BI GGWCC 1 cut(s) 1524
VspI ATTAAT 2 cut(s) 405, 1560
XapI RAATTY 2 cut(s) 502, 1133
XbaI TCTAGA 1 cut(s) 841
XspI CTAG 4 cut(s) 842, 872, 887, 1370
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.