AT1G29240

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006667
Physical Location & Seq
Reverse (-)
10216779 .. 10219942
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29240.1

Sequence Viewer

Length: 1734 bp
ATGGAGGAGAGGAAACTGAACTTCAGCGTACCTCTTCTTTCAACAAGACGGATGCAGAAGACAGCAGGAGTCTCTGTGCGTAGAAACAAGAGTAATAACTTCACTGATTATGACTCTAAGACAAGTGAATGTCCTTCTGTTCCAGTTCTTGTTCCATATATGATGGGTTTAGATGATGAGGTTACTGAACCTGCCTCTGTTCCTTTCACTTGGGAACAAGCTCCTGGAAGATTAAAGGGCAATGATTTCAAACCCCAAGTTTGTGTTTTGATGAAAGAAGAAGAACAAGTTTTTACACCATGTCTTCCACCGGGTAAAGCCGTTGATGCAAACATGACAAGATTGCAGAGTTCAAAGGGTAAACAAGTTGAAGAATCAGATGATGATGAAGATGATGTGTTTTCTGATGCTCTTGACACTCTCTCTCCAAAGGACTCGTTTTCTTTTAACAATAGCATTAGTGGTGTGAGTGAATATGGTGGCGTTGAGACCAAGAAACCACTGGATGCTCAATCTCGGGATTTCATGATGAGTCGTTTTTTACCAGCTGCCAAAGCTATGACTGTGGAGCAGTCTCATTATGCTTCGAATCGAAAACCATCCACTTTTATGGCTGAACCAACGATACAGATAAGAGAGTTAGTACCGGGGGAGAAGCAGCAAACTCCTAATAGATATGATGTGTCTATAGTCCCATCTTACTATTACCACCAAGACATTGATGATGAAGAAAGCAAGGTGGGTGAGGAAGATGATGAAGTTTCTGAGTACGCCTATCTTTCAAAGAGAGGTTGTGGAATGTTGCCACAATTGTGCTTTAAAGACTCTCTCGGCATGCTGAACACAGTGCCTGGTTTTAAAGCTAAACACAACTCTCCAATAACATCACCAAGTCATGATCAAGTGAAGTCAAGCAAGGTTGCTCAACTCAAATATCGATTCCAATCTGTTAAAAAGCTAGCTCTTGATTCAGTTTCTAAGCACAAGTTGAGTGGTAAAGTTCATTCACCAGTTCATCCAAGCAATGGGAAGAAGTTCAACTCTGAATCAAACTTGATTTCTGCTGCGAAGAGGTCTTCATCTCCTTACAGACACTCTCGCTGTATGTCACCATTTCGCAGTACAGGTAACGGTTCTCCTTTACACCATGCGGGTTTCCCTGAGACTCGTAGGGAAACCGAGAACCTGAGAGCTAACAGGTTGAGCAATCATACTAGAAACATAAGCAGGACGTCTCAGGAGTTACTCTACCCAAAAAGCAATGGTTCAATCTTGGAGAAGACAGTTTATGTCGACACCGAGAATGATCACATGACCAATGATCAGCATAACTCAAATCTCATGATCTTTCCAGAGGAAGCAGATATGACAGGAAGGAAACCAGATGCCAATCCTGAACTTGAAGCTTTTGAAAATATAAGTATTAGAAGTAGTGAAATGGTGAAGGGAAATGAGTTAGTAGAGATCAGTAGTGGTTTTGATCGGTCTCCTCTTGCACCACCTTCTCCCAAAAGGCCTTCTGAATCTTGGCTTTGTCATAATCTGCCTTCAGTAACTTCTCAGATCACTTCACGTAGATATCATCCATTCAACCCCCAAAAGCAGGATCTTACAGAAAACTACAGAAATGGTACCAAGTGGGAAACTATTGTTAAGACTTCCTACATGCACAGAGATCATATCCGATATTCCGAAGAACTGGTTGCTCATACATCTCATCAATCCAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

577

Amino Acids

65.12

Weight (kDa)

6.69

Isoelectric Point (pI)

67.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 1 - 470 5.4e-181 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1235
Acc36I ACCTGC 1 cut(s) 199
Acc65I GGTACC 1 cut(s) 1631
AccB1I GGYRCC 1 cut(s) 1631
AccB7I CCANNNNNTGG 1 cut(s) 1025
AccI GTMKAC 1 cut(s) 1293
AciI CCGC 1 cut(s) 1151
AclWI GGATC 1 cut(s) 1614
AcuI CTGAAG 2 cut(s) 7, 1533
AcyI GRCGYC 1 cut(s) 1232
AfaI GTAC 5 cut(s) 30, 645, 770, 1123, 1633
AfiI CCNNNNNNNGG 2 cut(s) 1025, 1603
AjnI CCWGG 2 cut(s) 223, 850
AleI CACNNNNGTG 1 cut(s) 811
AluBI AGCT 8 cut(s) 221, 548, 557, 863, 958, 962, 1193, 1406
AluI AGCT 8 cut(s) 221, 548, 557, 863, 958, 962, 1193, 1406
Alw26I GTCTC 6 cut(s) 76, 482, 579, 1157, 1239, 1491
AlwI GGATC 1 cut(s) 1614
AlwNI CAGNNNCTG 1 cut(s) 851
Ama87I CYCGRG 1 cut(s) 516
AoxI GGCC 1 cut(s) 1514
ApeKI GCWGC 3 cut(s) 548, 658, 1064
Asp700I GAANNNNTTC 1 cut(s) 1034
Asp718I GGTACC 1 cut(s) 1631
AsuC2I CCSGG 2 cut(s) 312, 648
AsuHPI GGTGA 5 cut(s) 755, 879, 999, 1101, 1453
AsuII TTCGAA 1 cut(s) 587
AsuNHI GCTAGC 1 cut(s) 958
AvaI CYCGRG 1 cut(s) 516
BanI GGYRCC 1 cut(s) 1631
BbsI GAAGAC 4 cut(s) 65, 296, 1068, 1286
BbvI GCAGC 3 cut(s) 535, 670, 1051
BccI CCATC 3 cut(s) 157, 607, 703
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 225, 852
BclI TGATCA 3 cut(s) 898, 1306, 1321
BcnI CCSGG 2 cut(s) 312, 648
BcoDI GTCTC 6 cut(s) 76, 482, 579, 1157, 1239, 1491
BfaI CTAG 2 cut(s) 959, 1215
BfmI CTRYAG 2 cut(s) 687, 1621
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 3 cut(s) 549, 659, 1065
BlsI GCNGC 3 cut(s) 550, 660, 1066
Bme1390I CCNGG 4 cut(s) 225, 312, 648, 852
BmeT110I CYCGRG 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 1633
BmrFI CCNGG 4 cut(s) 225, 312, 648, 852
BmsI GCATC 5 cut(s) 42, 316, 397, 496, 1375
BmtI GCTAGC 1 cut(s) 962
BpiI GAAGAC 4 cut(s) 65, 296, 1068, 1286
Bpu14I TTCGAA 1 cut(s) 587
BpuMI CCSGG 2 cut(s) 312, 648
Bsa29I ATCGAT 1 cut(s) 937
BsaAI YACGTR 1 cut(s) 1574
BsaBI GATNNNNATC 2 cut(s) 943, 1389
BsaHI GRCGYC 1 cut(s) 1232
BsaI GGTCTC 2 cut(s) 482, 1491
BsaJI CCNNGG 1 cut(s) 647
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 409, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 1025, 1603
Bse1I ACTGG 4 cut(s) 143, 507, 1010, 1704
Bse3DI GCAATG 3 cut(s) 247, 1030, 1267
Bse8I GATNNNNATC 2 cut(s) 943, 1389
BseBI CCWGG 2 cut(s) 225, 852
BseCI ATCGAT 1 cut(s) 937
BseDI CCNNGG 1 cut(s) 647
BseGI GGATG 5 cut(s) 57, 511, 599, 1015, 1582
BseJI GATNNNNATC 2 cut(s) 943, 1389
BseLI CCNNNNNNNGG 2 cut(s) 1025, 1603
BseMI GCAATG 3 cut(s) 247, 1030, 1267
BseMII CTCAG 5 cut(s) 756, 1152, 1178, 1250, 1574
BseNI ACTGG 4 cut(s) 143, 507, 1010, 1704
BseRI GAGGAG 2 cut(s) 20, 1479
BseXI GCAGC 3 cut(s) 535, 670, 1051
BshFI GGCC 1 cut(s) 1516
BshNI GGYRCC 1 cut(s) 1631
BshVI ATCGAT 1 cut(s) 937
BsiHKCI CYCGRG 1 cut(s) 516
BsiSI CCGG 2 cut(s) 311, 647
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 2 cut(s) 1025, 1603
BsmAI GTCTC 6 cut(s) 76, 482, 579, 1157, 1239, 1491
BsmBI CGTCTC 1 cut(s) 1239
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 1 cut(s) 1516
Bso31I GGTCTC 2 cut(s) 482, 1491
BsoBI CYCGRG 1 cut(s) 516
Bsp119I TTCGAA 1 cut(s) 587
Bsp143I GATC 9 cut(s) 898, 1306, 1321, 1344, 1464, 1480, 1563, 1606, 1675
BspACI CCGC 1 cut(s) 1151
BspANI GGCC 1 cut(s) 1516
BspCNI CTCAG 5 cut(s) 757, 1153, 1179, 1249, 1573
BspDI ATCGAT 1 cut(s) 937
BspHI TCATGA 3 cut(s) 525, 895, 1341
BspLI GGNNCC 1 cut(s) 1633
BspMI ACCTGC 1 cut(s) 199
BspOI GCTAGC 1 cut(s) 962
BspPI GGATC 1 cut(s) 1614
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 1631
BspTNI GGTCTC 2 cut(s) 482, 1491
BsrDI GCAATG 3 cut(s) 247, 1030, 1267
BsrI ACTGG 4 cut(s) 143, 507, 1010, 1704
BssECI CCNNGG 1 cut(s) 647
BssMI GATC 9 cut(s) 898, 1306, 1321, 1344, 1464, 1480, 1563, 1606, 1675
BssNI GRCGYC 1 cut(s) 1232
Bst2UI CCWGG 2 cut(s) 225, 852
Bst4CI ACNGT 4 cut(s) 565, 847, 1133, 1285
Bst6I CTCTTC 2 cut(s) 39, 1064
BstACI GRCGYC 1 cut(s) 1232
BstBAI YACGTR 1 cut(s) 1574
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 836, 960
BstDEI CTNAG 7 cut(s) 117, 765, 978, 1161, 1187, 1236, 1560
BstF5I GGATG 5 cut(s) 57, 511, 599, 1015, 1582
BstKTI GATC 9 cut(s) 901, 1309, 1324, 1347, 1467, 1483, 1566, 1609, 1678
BstMAI GTCTC 6 cut(s) 76, 482, 579, 1157, 1239, 1491
BstMBI GATC 9 cut(s) 898, 1306, 1321, 1344, 1464, 1480, 1563, 1606, 1675
BstMWI GCNNNNNNNGC 2 cut(s) 326, 554
BstNI CCWGG 2 cut(s) 225, 852
BstNSI RCATGY 2 cut(s) 838, 1669
BstSCI CCNGG 4 cut(s) 223, 310, 646, 850
BstSFI CTRYAG 2 cut(s) 687, 1621
BstV1I GCAGC 3 cut(s) 535, 670, 1051
BstV2I GAAGAC 4 cut(s) 65, 296, 1068, 1286
BstX2I RGATCY 1 cut(s) 1606
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 1606
Bsu15I ATCGAT 1 cut(s) 937
BsuRI GGCC 1 cut(s) 1516
BsuTUI ATCGAT 1 cut(s) 937
BtsCI GGATG 5 cut(s) 57, 511, 599, 1015, 1582
BtsIMutI CAGTG 3 cut(s) 102, 500, 852
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 836, 960
CaiI CAGNNNCTG 1 cut(s) 851
CciI TCATGA 3 cut(s) 525, 895, 1341
ClaI ATCGAT 1 cut(s) 937
Csp6I GTAC 5 cut(s) 29, 644, 769, 1122, 1632
CspCI CAANNNNNGTGG 2 cut(s) 973, 1008
CviAII CATG 9 cut(s) 300, 334, 526, 835, 896, 1148, 1312, 1342, 1666
CviQI GTAC 5 cut(s) 29, 644, 769, 1122, 1632
DdeI CTNAG 7 cut(s) 117, 765, 978, 1161, 1187, 1236, 1560
DpnI GATC 9 cut(s) 900, 1308, 1323, 1346, 1466, 1482, 1565, 1608, 1677
DpnII GATC 9 cut(s) 898, 1306, 1321, 1344, 1464, 1480, 1563, 1606, 1675
DraI TTTAAA 2 cut(s) 820, 859
Eam1104I CTCTTC 2 cut(s) 39, 1064
EarI CTCTTC 2 cut(s) 39, 1064
Eco147I AGGCCT 1 cut(s) 1516
Eco31I GGTCTC 2 cut(s) 482, 1491
Eco32I GATATC 1 cut(s) 1580
Eco57I CTGAAG 2 cut(s) 7, 1533
Eco88I CYCGRG 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 223, 850
EcoRV GATATC 1 cut(s) 1580
Esp3I CGTCTC 1 cut(s) 1239
FaeI CATG 9 cut(s) 303, 337, 529, 838, 899, 1151, 1315, 1345, 1669
FaqI GGGAC 1 cut(s) 677
FatI CATG 9 cut(s) 299, 333, 525, 834, 895, 1147, 1311, 1341, 1665
FauI CCCGC 1 cut(s) 1144
FbaI TGATCA 3 cut(s) 898, 1306, 1321
FblI GTMKAC 1 cut(s) 1293
Fnu4HI GCNGC 3 cut(s) 549, 659, 1065
FokI GGATG 5 cut(s) 64, 518, 586, 1002, 1569
Fsp4HI GCNGC 3 cut(s) 549, 659, 1065
FspBI CTAG 2 cut(s) 959, 1215
GluI GCNGC 3 cut(s) 549, 659, 1065
HaeIII GGCC 1 cut(s) 1516
HapII CCGG 2 cut(s) 311, 647
Hin1I GRCGYC 1 cut(s) 1232
Hin1II CATG 9 cut(s) 303, 337, 529, 838, 899, 1151, 1315, 1345, 1669
HincII GTYRAC 1 cut(s) 1294
HindII GTYRAC 1 cut(s) 1294
HindIII AAGCTT 1 cut(s) 1404
HpaII CCGG 2 cut(s) 311, 647
HphI GGTGA 5 cut(s) 755, 879, 999, 1101, 1453
Hpy166II GTNNAC 2 cut(s) 362, 1294
Hpy188I TCNGA 8 cut(s) 379, 406, 766, 1045, 1522, 1563, 1685, 1693
Hpy188III TCNNGA 9 cut(s) 413, 518, 526, 896, 965, 1238, 1342, 1352, 1394
Hpy8I GTNNAC 2 cut(s) 362, 1294
HpyAV CCTTC 6 cut(s) 144, 1368, 1438, 1512, 1527, 1557
HpyCH4III ACNGT 4 cut(s) 565, 847, 1133, 1285
HpyCH4IV ACGT 2 cut(s) 1232, 1573
HpyCH4V TGCA 5 cut(s) 55, 329, 346, 1496, 1669
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 554
HpyF3I CTNAG 7 cut(s) 117, 765, 978, 1161, 1187, 1236, 1560
HpySE526I ACGT 2 cut(s) 1232, 1573
Hsp92I GRCGYC 1 cut(s) 1232
Hsp92II CATG 9 cut(s) 303, 337, 529, 838, 899, 1151, 1315, 1345, 1669
KpnI GGTACC 1 cut(s) 1635
Ksp22I TGATCA 3 cut(s) 898, 1306, 1321
Kzo9I GATC 9 cut(s) 898, 1306, 1321, 1344, 1464, 1480, 1563, 1606, 1675
LmnI GCTCC 2 cut(s) 226, 568
Lsp1109I GCAGC 3 cut(s) 535, 670, 1051
LweI GCATC 5 cut(s) 42, 316, 397, 496, 1375
MaeI CTAG 2 cut(s) 959, 1215
MaeII ACGT 2 cut(s) 1232, 1573
MaeIII GTNAC 5 cut(s) 181, 1107, 1127, 1242, 1552
MalI GATC 9 cut(s) 900, 1308, 1323, 1346, 1466, 1482, 1565, 1608, 1677
MboI GATC 9 cut(s) 898, 1306, 1321, 1344, 1464, 1480, 1563, 1606, 1675
MfeI CAATTG 1 cut(s) 809
MflI RGATCY 1 cut(s) 1606
MluCI AATT 1 cut(s) 809
MlyI GAGTC 6 cut(s) 78, 107, 428, 541, 818, 1159
MnlI CCTC 9 cut(s) 3, 42, 172, 205, 739, 782, 1065, 1348, 1500
MroXI GAANNNNTTC 1 cut(s) 1034
MseI TTAA 6 cut(s) 233, 447, 819, 858, 951, 1653
MslI CAYNNNNRTG 2 cut(s) 608, 811
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 2 cut(s) 311, 647
MspR9I CCNGG 4 cut(s) 225, 312, 648, 852
MunI CAATTG 1 cut(s) 809
MvaI CCWGG 2 cut(s) 225, 852
MwoI GCNNNNNNNGC 2 cut(s) 326, 554
NciI CCSGG 2 cut(s) 312, 648
NdeII GATC 9 cut(s) 898, 1306, 1321, 1344, 1464, 1480, 1563, 1606, 1675
NheI GCTAGC 1 cut(s) 958
NlaIII CATG 9 cut(s) 303, 337, 529, 838, 899, 1151, 1315, 1345, 1669
NlaIV GGNNCC 1 cut(s) 1633
NmeAIII GCCGAG 1 cut(s) 810
NmuCI GTSAC 1 cut(s) 1107
NspI RCATGY 2 cut(s) 838, 1669
NspV TTCGAA 1 cut(s) 587
OliI CACNNNNGTG 1 cut(s) 811
PaeI GCATGC 1 cut(s) 838
PagI TCATGA 3 cut(s) 525, 895, 1341
PceI AGGCCT 1 cut(s) 1516
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 6 cut(s) 374, 589, 939, 968, 1046, 1523
PflMI CCANNNNNTGG 1 cut(s) 1025
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 3 cut(s) 550, 660, 1066
PleI GAGTC 6 cut(s) 77, 107, 428, 540, 818, 1159
PpsI GAGTC 6 cut(s) 77, 107, 428, 540, 818, 1159
Ppu21I YACGTR 1 cut(s) 1574
Psp6I CCWGG 2 cut(s) 223, 850
PspGI CCWGG 2 cut(s) 223, 850
PspN4I GGNNCC 1 cut(s) 1633
PsrI GAACNNNNNNTAC 2 cut(s) 609, 641
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 1 cut(s) 1606
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 5 cut(s) 30, 645, 770, 1123, 1633
RsaNI GTAC 5 cut(s) 29, 644, 769, 1122, 1632
RseI CAYNNNNRTG 2 cut(s) 608, 811
SalI GTCGAC 1 cut(s) 1292
SaqAI TTAA 6 cut(s) 233, 447, 819, 858, 951, 1653
SatI GCNGC 3 cut(s) 549, 659, 1065
Sau3AI GATC 9 cut(s) 898, 1306, 1321, 1344, 1464, 1480, 1563, 1606, 1675
SchI GAGTC 6 cut(s) 78, 107, 428, 541, 818, 1159
ScrFI CCNGG 4 cut(s) 225, 312, 648, 852
SfaNI GCATC 5 cut(s) 42, 316, 397, 496, 1375
SfcI CTRYAG 2 cut(s) 687, 1621
SfuI TTCGAA 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 608, 811
SphI GCATGC 1 cut(s) 838
Sse9I AATT 1 cut(s) 809
SseBI AGGCCT 1 cut(s) 1516
SsiI CCGC 1 cut(s) 1151
SspMI CTAG 2 cut(s) 959, 1215
StuI AGGCCT 1 cut(s) 1516
StyD4I CCNGG 4 cut(s) 223, 310, 646, 850
TaaI ACNGT 4 cut(s) 565, 847, 1133, 1285
TaiI ACGT 2 cut(s) 1235, 1576
TaqI TCGA 4 cut(s) 587, 592, 937, 1293
TaqII GACCGA 1 cut(s) 1473
TasI AATT 1 cut(s) 809
TatI WGTACW 1 cut(s) 1121
TfiI GAWTC 6 cut(s) 374, 589, 939, 968, 1046, 1523
Tru1I TTAA 6 cut(s) 233, 447, 819, 858, 951, 1653
Tru9I TTAA 6 cut(s) 233, 447, 819, 858, 951, 1653
TscAI CASTG 3 cut(s) 109, 507, 852
TseFI GTSAC 1 cut(s) 1107
TseI GCWGC 3 cut(s) 548, 658, 1064
Tsp45I GTSAC 1 cut(s) 1107
TspDTI ATGAA 8 cut(s) 287, 402, 514, 741, 771, 992, 1004, 1068
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 3 cut(s) 109, 507, 852
Van91I CCANNNNNTGG 1 cut(s) 1025
XceI RCATGY 2 cut(s) 838, 1669
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 1293
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 2 cut(s) 959, 1215
ZraI GACGTC 1 cut(s) 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.