Rorug04G0454300
MYB Family

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005527
Physical Location & Seq
Reverse (-)
60827051 .. 60830502
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0454300.1

Sequence Viewer

Length: 1161 bp
ATGACGTCGTTTCGGCTGTTGTCTCGGGCATCGCGTAGGCTTCTGAAGCCTTCACACTCTCGCTCCCATCTCTCTGCCTATCAGCCAACCACAACCACAAGCACAACCACCACCAAACCGAACCCTAAAGAAACACCTTTGATCCCATTTAATCACAGGCACCGTTGGATTCCCAGTTATCTTGATTCTGATCTCAGGCTCGTAGCGCACATATCGACCTCGTCTTCATCGAACAAGGACGACAATCGGGTCAGCGATGACCCGAAAGCCCAAGCTTCTTGGATCGACGCTTATTTGCCCAGGCAGGCCCGCCCTTATGCTAAGCTGGCTCGCCTCGACAAGCCCATTGGCACCTGGTTGCTTGCTTGGCCTTGTATGTGGTCAGTAACACTGGCAGCAAGCCCAGGACACCTTCCTGATATTAAGATGTTGACACTATTTGGATGTGGGGCTTTGCTTTTAAGGGGGGCCGGATGTACCGTAAATGATCTCCTTGATCGGGATATTGACACCATGGTGGAACGTACAAAGTTGCGGCCAGTTGCAAGTGGTCTTTTAACACCTTTTAAAGGGTTGTGTTTTCTCGGATTTCAATTGCTTTTGGGTCTTGGAATTCTCCTCCAACTGAATAATTATAGCCATGTTTTGGGGGCTTCGTCTTTGTTGCTAGTTTTCTCCTATCCTCTCATGAAAAGGTTGACATTCTGGCCTCAAGCATACCTTGGTTTGACCTTTAACTGGGGAGCTTTGTTAGGATGGGCTGCAATCAAAGGAAGCATTGATCCAGCTATAGTACTCCCATTGTACATTTCTGGCGTATTTTGGACACTTGTGTATGATACGATATATGCACATCAGGATAAAGAAGATGATCTGAAGGTTGGTGTCAAATCTACCGCTTTGAGGTTTGGTGATTCAACAAAGGAGTGGATTACTGGGTTTGGAATCCTGTGCATCAGTAGTCTTGCGCTCAGTGGATATAATGCCGAAATTGGCTGGCCATATTATGCACTTTTGGCAGTTGCATCCGGACAATTAGCTTGGCAGATATGGACAGTTGACCTTTCATCCAGGCTTGATTGCAATGGAAAGTTTGTGTCGAACAAGTGGTTTGGTGCTATTATTTGCAGTGCAATATTATTGGGAAGACTGTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

386

Amino Acids

42.77

Weight (kDa)

9.38

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 122 - 365 1.5e-59 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 2 cut(s) 159, 350
AccB7I CCANNNNNTGG 1 cut(s) 646
AccII CGCG 1 cut(s) 34
AccIII TCCGGA 1 cut(s) 1028
AciI CCGC 3 cut(s) 310, 535, 897
AclWI GGATC 3 cut(s) 136, 290, 776
AcoI YGGCCR 2 cut(s) 536, 998
AcsI RAATTY 1 cut(s) 612
AcuI CTGAAG 2 cut(s) 65, 896
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 478, 526, 795, 806
AfiI CCNNNNNNNGG 5 cut(s) 499, 569, 646, 738, 903
AgsI TTSAA 2 cut(s) 593, 918
AjnI CCWGG 4 cut(s) 299, 353, 403, 1070
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 5 cut(s) 275, 325, 746, 788, 1040
AluI AGCT 5 cut(s) 275, 325, 746, 788, 1040
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 3 cut(s) 136, 290, 776
Ama87I CYCGRG 1 cut(s) 24
Aor13HI TCCGGA 1 cut(s) 1028
AoxI GGCC 6 cut(s) 306, 368, 468, 536, 707, 998
ApeKI GCWGC 2 cut(s) 395, 761
ApoI RAATTY 1 cut(s) 612
AspLEI GCGC 2 cut(s) 208, 970
AspS9I GGNCC 2 cut(s) 307, 468
AsuHPI GGTGA 1 cut(s) 923
AvaI CYCGRG 1 cut(s) 24
BalI TGGCCA 1 cut(s) 1000
BanI GGYRCC 2 cut(s) 159, 350
BbsI GAAGAC 2 cut(s) 216, 1153
BbvI GCAGC 2 cut(s) 407, 748
BccI CCATC 2 cut(s) 75, 750
BciT130I CCWGG 4 cut(s) 301, 355, 405, 1072
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 1 cut(s) 789
BisI GCNGC 3 cut(s) 396, 536, 762
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 3 cut(s) 397, 537, 763
BmcAI AGTACT 1 cut(s) 795
Bme1390I CCNGG 4 cut(s) 301, 355, 405, 1072
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 307, 468
BmiI GGNNCC 3 cut(s) 161, 352, 469
BmrFI CCNGG 4 cut(s) 301, 355, 405, 1072
BmrI ACTGGG 3 cut(s) 168, 748, 945
BmsI GCATC 3 cut(s) 38, 963, 1034
BmuI ACTGGG 3 cut(s) 168, 748, 945
BpiI GAAGAC 2 cut(s) 216, 1153
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 696
BsaBI GATNNNNATC 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 299, 403, 513, 721
BsaWI WCCGGW 1 cut(s) 1028
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 5 cut(s) 499, 569, 646, 738, 903
Bse1I ACTGG 5 cut(s) 174, 396, 539, 743, 940
Bse3DI GCAATG 1 cut(s) 1090
Bse8I GATNNNNATC 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 1028
BseBI CCWGG 4 cut(s) 301, 355, 405, 1072
BseDI CCNNGG 4 cut(s) 299, 403, 513, 721
BseGI GGATG 5 cut(s) 449, 479, 761, 1025, 1067
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 5 cut(s) 499, 569, 646, 738, 903
BseMI GCAATG 1 cut(s) 1090
BseMII CTCAG 2 cut(s) 208, 985
BseNI ACTGG 5 cut(s) 174, 396, 539, 743, 940
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 2 cut(s) 407, 748
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 6 cut(s) 308, 370, 470, 538, 709, 1000
BshNI GGYRCC 2 cut(s) 159, 350
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 2 cut(s) 471, 1029
BslI CCNNNNNNNGG 5 cut(s) 499, 569, 646, 738, 903
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 6 cut(s) 308, 370, 470, 538, 709, 1000
BsoBI CYCGRG 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 1028
Bsp1407I TGTACA 1 cut(s) 804
Bsp143I GATC 7 cut(s) 141, 190, 282, 487, 496, 781, 871
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 3 cut(s) 310, 535, 897
BspANI GGCC 6 cut(s) 308, 370, 470, 538, 709, 1000
BspCNI CTCAG 2 cut(s) 207, 984
BspEI TCCGGA 1 cut(s) 1028
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 3 cut(s) 161, 352, 469
BspPI GGATC 3 cut(s) 136, 290, 776
BspT107I GGYRCC 2 cut(s) 159, 350
BsrDI GCAATG 1 cut(s) 1090
BsrGI TGTACA 1 cut(s) 804
BsrI ACTGG 5 cut(s) 174, 396, 539, 743, 940
BssECI CCNNGG 4 cut(s) 299, 403, 513, 721
BssMI GATC 7 cut(s) 141, 190, 282, 487, 496, 781, 871
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 513, 721
Bst2UI CCWGG 4 cut(s) 301, 355, 405, 1072
Bst4CI ACNGT 4 cut(s) 164, 481, 1057, 1152
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 804
BstC8I GCNNGC 7 cut(s) 306, 310, 327, 331, 363, 400, 998
BstDEI CTNAG 3 cut(s) 194, 321, 971
BstDSI CCRYGG 1 cut(s) 513
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 5 cut(s) 449, 479, 761, 1025, 1067
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 208, 970
BstKTI GATC 7 cut(s) 144, 193, 285, 490, 499, 784, 874
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 7 cut(s) 141, 190, 282, 487, 496, 781, 871
BstMWI GCNNNNNNNGC 5 cut(s) 46, 205, 326, 367, 1016
BstNI CCWGG 4 cut(s) 301, 355, 405, 1072
BstSCI CCNGG 4 cut(s) 299, 353, 403, 1070
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 407, 748
BstV2I GAAGAC 2 cut(s) 216, 1153
BsuRI GGCC 6 cut(s) 308, 370, 470, 538, 709, 1000
BtgI CCRYGG 1 cut(s) 513
BtgZI GCGATG 2 cut(s) 15, 270
BtsCI GGATG 5 cut(s) 449, 479, 761, 1025, 1067
BtsI GCAGTG 1 cut(s) 1135
BtsIMutI CAGTG 3 cut(s) 389, 979, 1135
Cac8I GCNNGC 7 cut(s) 306, 310, 327, 331, 363, 400, 998
CciI TCATGA 1 cut(s) 687
CfoI GCGC 2 cut(s) 208, 970
Cfr13I GGNCC 2 cut(s) 307, 468
CseI GACGC 1 cut(s) 296
CsiI ACCWGGT 1 cut(s) 353
Csp6I GTAC 4 cut(s) 477, 525, 794, 805
CviAII CATG 3 cut(s) 514, 641, 688
CviQI GTAC 4 cut(s) 477, 525, 794, 805
DdeI CTNAG 3 cut(s) 194, 321, 971
DpnI GATC 7 cut(s) 143, 192, 284, 489, 498, 783, 873
DpnII GATC 7 cut(s) 141, 190, 282, 487, 496, 781, 871
DraI TTTAAA 1 cut(s) 568
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 2 cut(s) 536, 998
Eco130I CCWWGG 2 cut(s) 513, 721
Eco57I CTGAAG 2 cut(s) 65, 896
Eco88I CYCGRG 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 4 cut(s) 299, 353, 403, 1070
EcoT14I CCWWGG 2 cut(s) 513, 721
ErhI CCWWGG 2 cut(s) 513, 721
FaeI CATG 3 cut(s) 517, 644, 691
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FatI CATG 3 cut(s) 513, 640, 687
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 396, 536, 762
FokI GGATG 5 cut(s) 456, 486, 768, 1012, 1054
Fsp4HI GCNGC 3 cut(s) 396, 536, 762
FspBI CTAG 1 cut(s) 668
GlaI GCGC 2 cut(s) 207, 969
GluI GCNGC 3 cut(s) 396, 536, 762
HaeIII GGCC 6 cut(s) 308, 370, 470, 538, 709, 1000
HapII CCGG 2 cut(s) 471, 1029
HgaI GACGC 1 cut(s) 296
HhaI GCGC 2 cut(s) 208, 970
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 517, 644, 691
Hin6I GCGC 2 cut(s) 206, 968
HinP1I GCGC 2 cut(s) 206, 968
HincII GTYRAC 3 cut(s) 432, 699, 1060
HindII GTYRAC 3 cut(s) 432, 699, 1060
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 4 cut(s) 169, 185, 914, 945
HpaII CCGG 2 cut(s) 471, 1029
HphI GGTGA 1 cut(s) 923
Hpy166II GTNNAC 3 cut(s) 432, 699, 1060
Hpy188I TCNGA 4 cut(s) 45, 190, 587, 876
Hpy188III TCNNGA 6 cut(s) 182, 416, 500, 688, 857, 1029
Hpy8I GTNNAC 3 cut(s) 432, 699, 1060
Hpy99I CGWCG 2 cut(s) 10, 290
HpyAV CCTTC 3 cut(s) 60, 422, 871
HpyCH4III ACNGT 4 cut(s) 164, 481, 1057, 1152
HpyCH4IV ACGT 2 cut(s) 5, 523
HpyCH4V TGCA 9 cut(s) 545, 764, 851, 954, 1010, 1025, 1083, 1128, 1133
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 205, 326, 367, 1016
HpyF3I CTNAG 3 cut(s) 194, 321, 971
HpySE526I ACGT 2 cut(s) 5, 523
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 517, 644, 691
HspAI GCGC 2 cut(s) 206, 968
Kpn2I TCCGGA 1 cut(s) 1028
Kzo9I GATC 7 cut(s) 141, 190, 282, 487, 496, 781, 871
LmnI GCTCC 2 cut(s) 68, 743
Lsp1109I GCAGC 2 cut(s) 407, 748
LweI GCATC 3 cut(s) 38, 963, 1034
MabI ACCWGGT 1 cut(s) 353
MaeI CTAG 1 cut(s) 668
MaeII ACGT 2 cut(s) 5, 523
MaeIII GTNAC 1 cut(s) 385
MalI GATC 7 cut(s) 143, 192, 284, 489, 498, 783, 873
MboI GATC 7 cut(s) 141, 190, 282, 487, 496, 781, 871
MboII GAAGA 3 cut(s) 216, 878, 1158
MfeI CAATTG 1 cut(s) 593
MlsI TGGCCA 1 cut(s) 1000
MluCI AATT 5 cut(s) 593, 612, 631, 990, 1034
MluNI TGGCCA 1 cut(s) 1000
MmeI TCCRAC 2 cut(s) 146, 646
MnlI CCTC 6 cut(s) 229, 344, 629, 693, 720, 897
Mox20I TGGCCA 1 cut(s) 1000
MroI TCCGGA 1 cut(s) 1028
MscI TGGCCA 1 cut(s) 1000
MseI TTAA 6 cut(s) 150, 423, 461, 557, 567, 735
MslI CAYNNNNRTG 1 cut(s) 515
Msp20I TGGCCA 1 cut(s) 1000
MspI CCGG 2 cut(s) 471, 1029
MspR9I CCNGG 4 cut(s) 301, 355, 405, 1072
MunI CAATTG 1 cut(s) 593
MvaI CCWGG 4 cut(s) 301, 355, 405, 1072
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 46, 205, 326, 367, 1016
NcoI CCATGG 1 cut(s) 513
NdeII GATC 7 cut(s) 141, 190, 282, 487, 496, 781, 871
NlaIII CATG 3 cut(s) 517, 644, 691
NlaIV GGNNCC 3 cut(s) 161, 352, 469
OliI CACNNNNGTG 1 cut(s) 515
PagI TCATGA 1 cut(s) 687
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 227
PfeI GAWTC 4 cut(s) 169, 185, 914, 945
PflFI GACNNNGTC 1 cut(s) 220
PflMI CCANNNNNTGG 1 cut(s) 646
PkrI GCNGC 3 cut(s) 397, 537, 763
Psp6I CCWGG 4 cut(s) 299, 353, 403, 1070
PspGI CCWGG 4 cut(s) 299, 353, 403, 1070
PspN4I GGNNCC 3 cut(s) 161, 352, 469
PspPI GGNCC 2 cut(s) 307, 468
PsyI GACNNNGTC 1 cut(s) 220
RsaI GTAC 4 cut(s) 478, 526, 795, 806
RsaNI GTAC 4 cut(s) 477, 525, 794, 805
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 6 cut(s) 150, 423, 461, 557, 567, 735
SatI GCNGC 3 cut(s) 396, 536, 762
Sau3AI GATC 7 cut(s) 141, 190, 282, 487, 496, 781, 871
Sau96I GGNCC 2 cut(s) 307, 468
ScaI AGTACT 1 cut(s) 795
ScrFI CCNGG 4 cut(s) 301, 355, 405, 1072
SexAI ACCWGGT 1 cut(s) 353
SfaNI GCATC 3 cut(s) 38, 963, 1034
SfcI CTRYAG 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
Sse9I AATT 5 cut(s) 593, 612, 631, 990, 1034
SsiI CCGC 3 cut(s) 310, 535, 897
SspI AATATT 1 cut(s) 1137
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 4 cut(s) 299, 353, 403, 1070
StyI CCWWGG 2 cut(s) 513, 721
TaaI ACNGT 4 cut(s) 164, 481, 1057, 1152
TaiI ACGT 2 cut(s) 8, 526
TaqI TCGA 5 cut(s) 215, 230, 285, 336, 1100
TasI AATT 5 cut(s) 593, 612, 631, 990, 1034
TatI WGTACW 2 cut(s) 793, 804
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 4 cut(s) 169, 185, 914, 945
Tru1I TTAA 6 cut(s) 150, 423, 461, 557, 567, 735
Tru9I TTAA 6 cut(s) 150, 423, 461, 557, 567, 735
TscAI CASTG 3 cut(s) 396, 979, 1135
TseI GCWGC 2 cut(s) 395, 761
TspDTI ATGAA 3 cut(s) 216, 704, 1056
TspRI CASTG 3 cut(s) 396, 979, 1135
Tth111I GACNNNGTC 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 646
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 612
XspI CTAG 1 cut(s) 668
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.