Rh5CG094100
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005527
Physical Location & Seq
Reverse (-)
7458903 .. 7462886
3984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG094100.1

Sequence Viewer

Length: 1152 bp
ATGATGAATGAGCTGGAGTTAATTGGTGATCAAAAAGAAAAGACTGACAAAAATATCAGTGAGGACCAAGCAGAAAACATATCGGTGGGTTCTTCCCAGAAATGCTCATGCTTTGATTTAAATGAAGAAGCCAGCGATAACAGCGACAATGATATTAGCAATGCCAACGTTAACCTGGCTGATAATGAACTTAGTACAGTTAGAAATGATGAATGTAGAGCCCTAGCCCAGGGAAACATTAATAGTAATGCAGCTACTATTAGTAATAGCTCTAGGGTTAAAGTAAGGCCATATGTACGATCCAAACTACCTCGTCTGCGGTGGACACCCCAACTCCATCTTTCATTTTTGCATGCTTTGGAATTACTGGGAGGGCATGAGAGAGCAACTCCCAAGTTGGTTCTTCAGCTAATGAATGTGAGAGGACTAAGTATTTCCCACGTAAAGAGTCACTTGCAGATGTATCGAAGTAAGAAGCTTGATAGGGATGGTCAAGTAGTATCTGATGAGAAAACTTACGACTACACGGATGGAAGAGAATCAAGGGATCACATACCTAACTTGGATTCGAGGTCAAGTTCTCTGACAAAGAAAGAAGTCGTACAAGGCAACAATTTGAACAAAGCTTTGCATCATACAAGCACCCCCATAAACCCTAGCCGATTACATGAGGAAAAGAGGTGGCCTCCATTTCAAAGCATTAGCAAAAGCTGGAGGGCCAGAAGATTTGCTTCCAACAATATCAATTGGTCAAATAGTCATAACGGCTCATCCCAATCTGATATAATGCATCACATGATTAGCAACAGACCAACAGATCATGATCTACGTTGTTGGAACCTTGAAGGTCATAGCAATTCAAGTAGCTACAAACAAGAATTCGAACCGCCATTTAGGCTTGAGTGGAACAAGGAAAAAATTTTGAAGTACAAGGAATGGATGCCTGATTTGGAGTTGGGTCTGCAAAGCCAAAGAGTTTGGAATGAGATCAATGACGAGACTCAGCATCATCAGACGATTAGTCACGCAGAAGGAAATTATGAAACTGTGCAAGGAGTTATAGAGACTTCACAACATTACAAAGATCATCAATTCGAGGACATGAATAGCAAACAAGAAACTATTAGCACCAAGCTTTCCCTTTCTCTTTAA

Protein Analysis

383

Amino Acids

44.08

Weight (kDa)

6.35

Isoelectric Point (pI)

57.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 105 - 156 3.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 319, 887
AclI AACGTT 1 cut(s) 168
AclWI GGATC 2 cut(s) 294, 555
AcsI RAATTY 2 cut(s) 878, 918
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 4 cut(s) 196, 297, 603, 929
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 5 cut(s) 619, 695, 845, 861, 925
AhdI GACNNNNNGTC 1 cut(s) 1020
AjnI CCWGG 2 cut(s) 174, 228
AluBI AGCT 9 cut(s) 13, 254, 270, 409, 478, 626, 711, 867, 1135
AluI AGCT 9 cut(s) 13, 254, 270, 409, 478, 626, 711, 867, 1135
Alw26I GTCTC 2 cut(s) 992, 1058
AlwI GGATC 2 cut(s) 294, 555
AoxI GGCC 3 cut(s) 287, 683, 717
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 2 cut(s) 878, 918
AseI ATTAAT 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 64, 717
AsuHPI GGTGA 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 882
AvaII GGWCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 263
BccI CCATC 3 cut(s) 345, 482, 524
BceAI ACGGC 1 cut(s) 781
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BciT130I CCWGG 2 cut(s) 176, 230
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 992, 1058
BfaI CTAG 3 cut(s) 224, 273, 657
BglI GCCNNNNNGGC 1 cut(s) 895
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 176, 230
Bme18I GGWCC 1 cut(s) 64
BmeRI GACNNNNNGTC 1 cut(s) 1020
BmgT120I GGNCC 2 cut(s) 64, 717
BmiI GGNNCC 1 cut(s) 839
BmrFI CCNGG 2 cut(s) 176, 230
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 4 cut(s) 640, 799, 930, 1015
BmuI ACTGGG 1 cut(s) 377
BplI GAGNNNNNCTC 4 cut(s) 373, 405, 670, 702
BpmI CTGGAG 2 cut(s) 35, 733
Bpu14I TTCGAA 1 cut(s) 882
BpuEI CTTGAG 1 cut(s) 920
BsaAI YACGTR 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 228, 229
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 822
BseBI CCWGG 2 cut(s) 176, 230
BseDI CCNNGG 2 cut(s) 228, 229
BseGI GGATG 4 cut(s) 493, 535, 770, 945
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 1016
BseNI ACTGG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 3 cut(s) 289, 685, 719
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 992, 1058
BsnI GGCC 3 cut(s) 289, 685, 719
Bsp119I TTCGAA 1 cut(s) 882
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 7 cut(s) 28, 299, 547, 817, 823, 987, 1084
BspACI CCGC 2 cut(s) 319, 887
BspANI GGCC 3 cut(s) 289, 685, 719
BspCNI CTCAG 1 cut(s) 1015
BspHI TCATGA 1 cut(s) 820
BspLI GGNNCC 1 cut(s) 839
BspPI GGATC 2 cut(s) 294, 555
BspT104I TTCGAA 1 cut(s) 882
BsrDI GCAATG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 2 cut(s) 228, 229
BssMI GATC 7 cut(s) 28, 299, 547, 817, 823, 987, 1084
Bst2UI CCWGG 2 cut(s) 176, 230
Bst4CI ACNGT 2 cut(s) 199, 1048
Bst6I CTCTTC 1 cut(s) 529
BstBAI YACGTR 1 cut(s) 442
BstBI TTCGAA 1 cut(s) 882
BstC8I GCNNGC 2 cut(s) 133, 354
BstDEI CTNAG 3 cut(s) 191, 428, 1002
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 4 cut(s) 493, 535, 770, 945
BstKTI GATC 7 cut(s) 31, 302, 550, 820, 826, 990, 1087
BstMAI GTCTC 2 cut(s) 992, 1058
BstMBI GATC 7 cut(s) 28, 299, 547, 817, 823, 987, 1084
BstMWI GCNNNNNNNGC 2 cut(s) 141, 895
BstNI CCWGG 2 cut(s) 176, 230
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 174, 228
BstV1I GCAGC 1 cut(s) 263
BsuRI GGCC 3 cut(s) 289, 685, 719
BtsCI GGATG 4 cut(s) 493, 535, 770, 945
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 133, 354
CciI TCATGA 1 cut(s) 820
Cfr13I GGNCC 2 cut(s) 64, 717
Csp6I GTAC 4 cut(s) 195, 296, 602, 928
CviAII CATG 7 cut(s) 108, 353, 377, 668, 796, 821, 1102
CviQI GTAC 4 cut(s) 195, 296, 602, 928
DdeI CTNAG 3 cut(s) 191, 428, 1002
DpnI GATC 7 cut(s) 30, 301, 549, 819, 825, 989, 1086
DpnII GATC 7 cut(s) 28, 299, 547, 817, 823, 987, 1084
DraI TTTAAA 1 cut(s) 120
DriI GACNNNNNGTC 1 cut(s) 1020
Eam1104I CTCTTC 1 cut(s) 529
Eam1105I GACNNNNNGTC 1 cut(s) 1020
EarI CTCTTC 1 cut(s) 529
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 389
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 878
EcoRII CCWGG 2 cut(s) 174, 228
EcoT22I ATGCAT 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 223
FaeI CATG 7 cut(s) 111, 356, 380, 671, 799, 824, 1105
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 715, 747
FatI CATG 7 cut(s) 107, 352, 376, 667, 795, 820, 1101
FauNDI CATATG 1 cut(s) 292
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 4 cut(s) 500, 542, 757, 952
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 3 cut(s) 224, 273, 657
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 35, 733
HaeIII GGCC 3 cut(s) 289, 685, 719
Hin1II CATG 7 cut(s) 111, 356, 380, 671, 799, 824, 1105
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 3 cut(s) 476, 624, 1133
HinfI GANTC 4 cut(s) 448, 539, 566, 1000
HpaI GTTAAC 1 cut(s) 172
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 172, 324
Hpy188I TCNGA 4 cut(s) 505, 585, 781, 1014
Hpy188III TCNNGA 1 cut(s) 821
Hpy8I GTNNAC 2 cut(s) 172, 324
HpyAV CCTTC 2 cut(s) 839, 1025
HpyCH4III ACNGT 2 cut(s) 199, 1048
HpyCH4IV ACGT 3 cut(s) 168, 441, 829
HpyCH4V TGCA 7 cut(s) 251, 352, 457, 631, 790, 964, 1051
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 895
HpyF3I CTNAG 3 cut(s) 191, 428, 1002
HpySE526I ACGT 3 cut(s) 168, 441, 829
Hsp92II CATG 7 cut(s) 111, 356, 380, 671, 799, 824, 1105
Ksp22I TGATCA 1 cut(s) 28
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 7 cut(s) 28, 299, 547, 817, 823, 987, 1084
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 4 cut(s) 640, 799, 930, 1015
MaeI CTAG 3 cut(s) 224, 273, 657
MaeII ACGT 3 cut(s) 168, 441, 829
MaeIII GTNAC 2 cut(s) 449, 1022
MalI GATC 7 cut(s) 30, 301, 549, 819, 825, 989, 1086
MboI GATC 7 cut(s) 28, 299, 547, 817, 823, 987, 1084
MboII GAAGA 5 cut(s) 84, 137, 395, 546, 735
MfeI CAATTG 1 cut(s) 745
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 9 cut(s) 21, 362, 613, 745, 856, 878, 918, 1036, 1091
MlyI GAGTC 2 cut(s) 457, 994
MmeI TCCRAC 2 cut(s) 759, 815
Mph1103I ATGCAT 1 cut(s) 792
MseI TTAA 6 cut(s) 20, 119, 171, 240, 279, 1150
MslI CAYNNNNRTG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 176, 230
MunI CAATTG 1 cut(s) 745
MvaI CCWGG 2 cut(s) 176, 230
MwoI GCNNNNNNNGC 2 cut(s) 141, 895
NdeI CATATG 1 cut(s) 292
NdeII GATC 7 cut(s) 28, 299, 547, 817, 823, 987, 1084
NlaIII CATG 7 cut(s) 111, 356, 380, 671, 799, 824, 1105
NlaIV GGNNCC 1 cut(s) 839
NmuCI GTSAC 2 cut(s) 449, 1022
NsiI ATGCAT 1 cut(s) 792
NspI RCATGY 1 cut(s) 356
NspV TTCGAA 1 cut(s) 882
PaeI GCATGC 1 cut(s) 356
PagI TCATGA 1 cut(s) 820
PasI CCCWGGG 1 cut(s) 229
PfeI GAWTC 2 cut(s) 539, 566
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 2 cut(s) 456, 994
PpsI GAGTC 2 cut(s) 456, 994
Ppu21I YACGTR 1 cut(s) 442
PshBI ATTAAT 1 cut(s) 240
Psp1406I AACGTT 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 174, 228
PspGI CCWGG 2 cut(s) 174, 228
PspN4I GGNNCC 1 cut(s) 839
PspPI GGNCC 2 cut(s) 64, 717
RsaI GTAC 4 cut(s) 196, 297, 603, 929
RsaNI GTAC 4 cut(s) 195, 296, 602, 928
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 6 cut(s) 20, 119, 171, 240, 279, 1150
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 7 cut(s) 28, 299, 547, 817, 823, 987, 1084
Sau96I GGNCC 2 cut(s) 64, 717
SchI GAGTC 2 cut(s) 457, 994
ScrFI CCNGG 2 cut(s) 176, 230
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 4 cut(s) 640, 799, 930, 1015
SfuI TTCGAA 1 cut(s) 882
SinI GGWCC 1 cut(s) 64
SmiI ATTTAAAT 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 899
SmoI CTYRAG 1 cut(s) 899
SphI GCATGC 1 cut(s) 356
Sse9I AATT 9 cut(s) 21, 362, 613, 745, 856, 878, 918, 1036, 1091
SsiI CCGC 2 cut(s) 319, 887
SspMI CTAG 3 cut(s) 224, 273, 657
StyD4I CCNGG 2 cut(s) 174, 228
SwaI ATTTAAAT 1 cut(s) 120
TaaI ACNGT 2 cut(s) 199, 1048
TaiI ACGT 3 cut(s) 171, 444, 832
TaqI TCGA 4 cut(s) 466, 569, 882, 1095
TasI AATT 9 cut(s) 21, 362, 613, 745, 856, 878, 918, 1036, 1091
TatI WGTACW 2 cut(s) 194, 927
TfiI GAWTC 2 cut(s) 539, 566
Tru1I TTAA 6 cut(s) 20, 119, 171, 240, 279, 1150
Tru9I TTAA 6 cut(s) 20, 119, 171, 240, 279, 1150
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 2 cut(s) 449, 1022
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 2 cut(s) 449, 1022
TspDTI ATGAA 8 cut(s) 20, 138, 201, 225, 333, 428, 1056, 1118
TspGWI ACGGA 1 cut(s) 542
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 64
VspI ATTAAT 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 2 cut(s) 878, 918
XceI RCATGY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 3 cut(s) 224, 273, 657
Zsp2I ATGCAT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.