Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005527

Physical Location & Seq

Genomic Coordinates Forward (+)

25481328 .. 25483690

Gene Structure 2363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGATGAGCTAGAATTTGGTTATCAGGAAGCTGAGAAGAGTAACGAGATCAGCGAGGAACAAGTAGAAAACGGATCAGTGGGATCGTCCCAGAAATTCTCATCCTTCGATTTGAATGAAGAAGCAAGTAGTGACAATGAAGAAAGAGGCCAAGGGAATAAAGCTGCAGATAATGATATCTCTAGTGGAGGAAATGAAGGGCAGAGGGTTAAAGTAAGGCAATATGTGAGATCGAAAATGCCTCGTCTTCGGTGGACACCTCAACTCCATCTTTCTTTTGTGCACGCTGTTGAAAGACTGGGTGGCCAAGATAGAGCAACTCCCAAATTAGTTCTTCAGCTAATGAATGTGAGAGGACTTAGCATTTCTCATGTAAAGAGTCACTTGCAGATGTATAGAAGTAAGAAGCTTGATGGGAATGGCCAAGTATTATCTGAAAACCACGAATCCAAGCATGGAAGGGATTACATATCTTGCATGGTGCACCAAACAATCAACCAGCCTCGGCGACATGTATACTTTAGAATGGACAACGGTGGCATCGTTGTAGCAACAAATCCACACGACTGTCATAGCCAATCACAGCCAGATTTTAAAGCTAGCTCAAGGTCAAGTTCTCTACTAAACAAAGAAGTCGCAAAAGGCAACAACTCGAACAAATCTATAGATTCAATCTTGCAAACTGTACCAATAAACCCTAGCAAGTTTCCTGAGGAAAAGAGGTGGCCTCCATTTGAAACGACTAACAAACAACAATGGAGGGCTAAAAGAATACCTGCTGCCAAAATCAATTGGTCGGATAATCGTAATGGCTCCCAATCTGACCATCTAATGCATCATATGCACACCACACCAAGGTTGATAGGGGAATCTTACAATTTAAGGCCACCAAACTGGCACCTTGGAGAGAGCAGAAACGTAAGGCAATTTCCATCAAACGCACACAATTCTATCACCAATTCCAGTTGCTACAAAACCGAATTCAAGTCGCCATTTAGGTTTGAGTTGAATGCAGAAAAATTTTCGAAGTACAAAGAATGGATGCCACAACTGGAATTGGGTCTGGGCCAAAGAGTTGAGAATTATGAGGAAAAGAAGATTACTTCCAGACATCGTATGGTTAGTGAAGATCATTATGGAACTGGGCAAAGAGTTAAACAGGAAATTAGCACTAAGCTTGCTCTTTCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

398

Amino Acids

45.53

Weight (kDa)

9.27

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07670 FvH4_3g07670 FvH4_3g07670
malus_domestica	MD05G1299300.v1.1 MD10G1278800.v1.1
prunus_persica	Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1
pyrus_communis	pycom05g27750 pycom10g23280
rosa_chinensis	RchiOBHm_Chr5g0011011
rosa_laevigata	RLG00000031802
rosa_multiflora	Rmu_sc0003242.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065390
rosa_rugosa	Rorug04G0454300 Rorug04G0454400 Rorug04G0454500 Rorug04G0454500 Rorug04G0454500
rosa_samantha	Rh5AG086700 Rh5BG081300 Rh5CG094100 Rh5DG081200
rosa_wichuraiana	Rw0G000110 Rw0G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	897
AccI	GTMKAC	1 cut(s)	516
AclWI	GGATC	2 cut(s)	82, 91
AcoI	YGGCCR	2 cut(s)	304, 421
AcsI	RAATTY	4 cut(s)	14, 95, 980, 1019
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	687, 1031
AfiI	CCNNNNNNNGG	1 cut(s)	855
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	6 cut(s)	115, 293, 672, 737, 985, 1009
AluBI	AGCT	8 cut(s)	10, 32, 164, 340, 409, 599, 603, 1177
AluI	AGCT	8 cut(s)	10, 32, 164, 340, 409, 599, 603, 1177
Alw21I	GWGCWC	2 cut(s)	285, 486
Alw44I	GTGCAC	2 cut(s)	281, 482
AlwI	GGATC	2 cut(s)	82, 91
AoxI	GGCC	6 cut(s)	148, 304, 421, 725, 884, 1066
ApaLI	GTGCAC	2 cut(s)	281, 482
ApeKI	GCWGC	2 cut(s)	164, 779
ApoI	RAATTY	4 cut(s)	14, 95, 980, 1019
AspS9I	GGNCC	1 cut(s)	1066
AsuHPI	GGTGA	1 cut(s)	946
AsuII	TTCGAA	1 cut(s)	1025
AsuNHI	GCTAGC	1 cut(s)	599
AxyI	CCTNAGG	1 cut(s)	711
BaeGI	GKGCMC	2 cut(s)	285, 486
BalI	TGGCCA	2 cut(s)	306, 423
BanI	GGYRCC	1 cut(s)	897
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	2 cut(s)	285, 486
BbvI	GCAGC	2 cut(s)	151, 766
BccI	CCATC	4 cut(s)	276, 407, 834, 940
BfaI	CTAG	4 cut(s)	11, 183, 600, 699
BfmI	CTRYAG	2 cut(s)	165, 663
BfuAI	ACCTGC	1 cut(s)	784
BisI	GCNGC	2 cut(s)	165, 780
BlsI	GCNGC	2 cut(s)	166, 781
BmgT120I	GGNCC	1 cut(s)	1066
BmiI	GGNNCC	2 cut(s)	814, 899
BmrI	ACTGGG	2 cut(s)	308, 1152
BmsI	GCATC	3 cut(s)	549, 844, 1032
BmtI	GCTAGC	1 cut(s)	603
BmuI	ACTGGG	2 cut(s)	308, 1152
BpiI	GAAGAC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	712, 744
Bpu14I	TTCGAA	1 cut(s)	1025
BpuEI	CTTGAG	1 cut(s)	589
BsaJI	CCNNGG	4 cut(s)	151, 503, 854, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	855
Bse1I	ACTGG	5 cut(s)	303, 899, 963, 1056, 1147
Bse21I	CCTNAGG	1 cut(s)	711
BseDI	CCNNGG	4 cut(s)	151, 503, 854, 901
BseGI	GGATG	3 cut(s)	10, 101, 1047
BseLI	CCNNNNNNNGG	1 cut(s)	855
BseMII	CTCAG	2 cut(s)	24, 702
BseNI	ACTGG	5 cut(s)	303, 899, 963, 1056, 1147
BseSI	GKGCMC	2 cut(s)	285, 486
BseXI	GCAGC	2 cut(s)	151, 766
BshFI	GGCC	6 cut(s)	150, 306, 423, 727, 886, 1068
BshNI	GGYRCC	1 cut(s)	897
BsiHKAI	GWGCWC	2 cut(s)	285, 486
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	855
BsmFI	GGGAC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	1015
BsnI	GGCC	6 cut(s)	150, 306, 423, 727, 886, 1068
Bsp119I	TTCGAA	1 cut(s)	1025
Bsp1286I	GDGCHC	2 cut(s)	285, 486
Bsp143I	GATC	5 cut(s)	48, 74, 83, 230, 1129
BspANI	GGCC	6 cut(s)	150, 306, 423, 727, 886, 1068
BspCNI	CTCAG	2 cut(s)	25, 703
BspLI	GGNNCC	2 cut(s)	814, 899
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	784
BspOI	GCTAGC	1 cut(s)	603
BspPI	GGATC	2 cut(s)	82, 91
BspT104I	TTCGAA	1 cut(s)	1025
BspT107I	GGYRCC	1 cut(s)	897
BsrI	ACTGG	5 cut(s)	303, 899, 963, 1056, 1147
BssECI	CCNNGG	4 cut(s)	151, 503, 854, 901
BssMI	GATC	5 cut(s)	48, 74, 83, 230, 1129
BssNAI	GTATAC	1 cut(s)	517
BssT1I	CCWWGG	3 cut(s)	151, 854, 901
Bst1107I	GTATAC	1 cut(s)	517
Bst4CI	ACNGT	3 cut(s)	536, 569, 685
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	1025
BstC8I	GCNNGC	3 cut(s)	285, 601, 1179
BstDEI	CTNAG	4 cut(s)	33, 359, 711, 1173
BstF5I	GGATG	3 cut(s)	10, 101, 1047
BstKTI	GATC	5 cut(s)	51, 77, 86, 233, 1132
BstMBI	GATC	5 cut(s)	48, 74, 83, 230, 1129
BstMWI	GCNNNNNNNGC	1 cut(s)	841
BstNSI	RCATGY	1 cut(s)	515
BstSFI	CTRYAG	2 cut(s)	165, 663
BstSLI	GKGCMC	2 cut(s)	285, 486
BstV1I	GCAGC	2 cut(s)	151, 766
BstV2I	GAAGAC	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	894
BstZ17I	GTATAC	1 cut(s)	517
Bsu36I	CCTNAGG	1 cut(s)	711
BsuRI	GGCC	6 cut(s)	150, 306, 423, 727, 886, 1068
BtsCI	GGATG	3 cut(s)	10, 101, 1047
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	3 cut(s)	285, 601, 1179
Cfr13I	GGNCC	1 cut(s)	1066
Csp6I	GTAC	2 cut(s)	686, 1030
CviAII	CATG	4 cut(s)	371, 455, 478, 512
CviQI	GTAC	2 cut(s)	686, 1030
DdeI	CTNAG	4 cut(s)	33, 359, 711, 1173
DpnI	GATC	5 cut(s)	50, 76, 85, 232, 1131
DpnII	GATC	5 cut(s)	48, 74, 83, 230, 1129
DraI	TTTAAA	1 cut(s)	595
EaeI	YGGCCR	2 cut(s)	304, 421
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	3 cut(s)	151, 854, 901
Eco32I	GATATC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	320
Eco81I	CCTNAGG	1 cut(s)	711
EcoRI	GAATTC	1 cut(s)	980
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	3 cut(s)	151, 854, 901
EcoT22I	ATGCAT	1 cut(s)	837
ErhI	CCWWGG	3 cut(s)	151, 854, 901
FaeI	CATG	4 cut(s)	374, 458, 481, 515
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	4 cut(s)	370, 454, 477, 511
FauNDI	CATATG	1 cut(s)	840
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	165, 780
FokI	GGATG	3 cut(s)	17, 88, 1054
Fsp4HI	GCNGC	2 cut(s)	165, 780
FspBI	CTAG	4 cut(s)	11, 183, 600, 699
GluI	GCNGC	2 cut(s)	165, 780
HaeIII	GGCC	6 cut(s)	150, 306, 423, 727, 886, 1068
Hin1II	CATG	4 cut(s)	374, 458, 481, 515
HindIII	AAGCTT	2 cut(s)	407, 1175
HinfI	GANTC	4 cut(s)	379, 446, 668, 869
HphI	GGTGA	1 cut(s)	946
Hpy166II	GTNNAC	4 cut(s)	255, 283, 484, 517
Hpy188I	TCNGA	3 cut(s)	436, 799, 823
Hpy188III	TCNNGA	3 cut(s)	26, 710, 1107
Hpy8I	GTNNAC	4 cut(s)	255, 283, 484, 517
HpyAV	CCTTC	3 cut(s)	115, 191, 453
HpyCH4III	ACNGT	3 cut(s)	536, 569, 685
HpyCH4IV	ACGT	1 cut(s)	918
HpyCH4V	TGCA	9 cut(s)	167, 283, 388, 477, 484, 679, 835, 844, 1013
HpyF10VI	GCNNNNNNNGC	1 cut(s)	841
HpyF3I	CTNAG	4 cut(s)	33, 359, 711, 1173
HpySE526I	ACGT	1 cut(s)	918
Hsp92II	CATG	4 cut(s)	374, 458, 481, 515
Kzo9I	GATC	5 cut(s)	48, 74, 83, 230, 1129
LmnI	GCTCC	1 cut(s)	818
Lsp1109I	GCAGC	2 cut(s)	151, 766
LweI	GCATC	3 cut(s)	549, 844, 1032
MaeI	CTAG	4 cut(s)	11, 183, 600, 699
MaeII	ACGT	1 cut(s)	918
MaeIII	GTNAC	3 cut(s)	41, 131, 380
MalI	GATC	5 cut(s)	50, 76, 85, 232, 1131
MboI	GATC	5 cut(s)	48, 74, 83, 230, 1129
MboII	GAAGA	7 cut(s)	49, 131, 152, 239, 326, 1108, 1139
MfeI	CAATTG	1 cut(s)	790
MhlI	GDGCHC	2 cut(s)	285, 486
MlsI	TGGCCA	2 cut(s)	306, 423
MluNI	TGGCCA	2 cut(s)	306, 423
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	1 cut(s)	777
Mox20I	TGGCCA	2 cut(s)	306, 423
Mph1103I	ATGCAT	1 cut(s)	837
MscI	TGGCCA	2 cut(s)	306, 423
MseI	TTAA	5 cut(s)	210, 594, 881, 1155, 1192
Msp20I	TGGCCA	2 cut(s)	306, 423
MunI	CAATTG	1 cut(s)	790
Mva1269I	GAATGC	1 cut(s)	1015
MwoI	GCNNNNNNNGC	1 cut(s)	841
NdeI	CATATG	1 cut(s)	840
NdeII	GATC	5 cut(s)	48, 74, 83, 230, 1129
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	4 cut(s)	374, 458, 481, 515
NlaIV	GGNNCC	2 cut(s)	814, 899
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	2 cut(s)	131, 380
NsiI	ATGCAT	1 cut(s)	837
NspI	RCATGY	1 cut(s)	515
NspV	TTCGAA	1 cut(s)	1025
PciI	ACATGT	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 540
PctI	GAATGC	1 cut(s)	1015
PfeI	GAWTC	3 cut(s)	446, 668, 869
PkrI	GCNGC	2 cut(s)	166, 781
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PscI	ACATGT	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	814, 899
PspPI	GGNCC	1 cut(s)	1066
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	687, 1031
RsaNI	GTAC	2 cut(s)	686, 1030
SaqAI	TTAA	5 cut(s)	210, 594, 881, 1155, 1192
SatI	GCNGC	2 cut(s)	165, 780
Sau3AI	GATC	5 cut(s)	48, 74, 83, 230, 1129
Sau96I	GGNCC	1 cut(s)	1066
SchI	GAGTC	1 cut(s)	388
SduI	GDGCHC	2 cut(s)	285, 486
SfaNI	GCATC	3 cut(s)	549, 844, 1032
SfcI	CTRYAG	2 cut(s)	165, 663
SfuI	TTCGAA	1 cut(s)	1025
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
SspMI	CTAG	4 cut(s)	11, 183, 600, 699
StyI	CCWWGG	3 cut(s)	151, 854, 901
TaaI	ACNGT	3 cut(s)	536, 569, 685
TaiI	ACGT	1 cut(s)	921
TaqI	TCGA	4 cut(s)	108, 233, 653, 1025
TatI	WGTACW	1 cut(s)	1029
TfiI	GAWTC	3 cut(s)	446, 668, 869
Tru1I	TTAA	5 cut(s)	210, 594, 881, 1155, 1192
Tru9I	TTAA	5 cut(s)	210, 594, 881, 1155, 1192
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	131, 380
TseI	GCWGC	2 cut(s)	164, 779
Tsp45I	GTSAC	2 cut(s)	131, 380
TspDTI	ATGAA	4 cut(s)	132, 153, 210, 359
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	84
VneI	GTGCAC	2 cut(s)	281, 482
XapI	RAATTY	4 cut(s)	14, 95, 980, 1019
XceI	RCATGY	1 cut(s)	515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1114
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	4 cut(s)	11, 183, 600, 699
Zsp2I	ATGCAT	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.